# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2c46A 241 2.52e-01 1ysrA 150 8.19e-01 1zbsA 291 8.38e-01 1r6xA 395 1.55e+00 b.122.1.3,c.26.1.5 97167,97168 2d0sA 79 2.12e+00 1s6cA 183 2.41e+00 a.39.1.5 98594 1ym3A 215 2.75e+00 1sumB 235 2.96e+00 a.7.12.1 106025 1dmhA 311 4.38e+00 1dmhA b.3.6.1 22633 2cohA 202 4.55e+00 1ifqA 138 4.62e+00 1ifqA d.110.4.1 62350 1eexA 554 4.79e+00 1dioA c.1.19.3 29650 1ow4A 129 5.33e+00 a.39.2.1 93628 1ylmA 144 5.65e+00 2a1xA 308 6.65e+00 2herA 368 7.99e+00 1i7hA 111 8.13e+00 d.15.4.1 71122 1kqfC 217 8.40e+00 f.21.1.1 72874 1d3gA 367 9.33e+00 1d3gA c.1.4.1 28600 1zejA 293 9.41e+00 2fbqA 235 1.04e+01 1e0eA 55 1.17e+01 1wjcA a.4.10.1 59147 1sqhA 312 1.18e+01 d.108.1.5 98966 2d2yA 145 1.19e+01 2g0qA 173 1.27e+01 1t1vA 93 1.42e+01 c.47.1.14 106278 1szwA 379 1.45e+01 d.265.1.4 99047 1qsgA 265 1.47e+01 1eny c.2.1.2 29935 1ofcX 304 1.48e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1ypqA 135 1.81e+01 1irdA 141 1.83e+01 a.1.1.2 66286 2clbA 188 1.89e+01 1vr5A 547 1.93e+01 1sfkA 76 1.95e+01 a.190.1.1 105488 2d9bA 109 2.05e+01 1s8nA 205 2.16e+01 c.23.1.1 105374 1hm6A 346 2.30e+01 1avc a.65.1.1 18147 1uok 558 2.46e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1u7gA 385 2.51e+01 f.44.1.1 107723 1orvA 728 2.55e+01 b.70.3.1,c.69.1.24 87354,87355 1gmlA 178 2.59e+01 c.8.5.2 70273 2gk9A 426 2.74e+01 1w0uA 55 2.80e+01 7taa 478 2.90e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2ftzA 284 2.92e+01 1d4aA 273 2.99e+01 1d4aA c.23.5.3 31219 1am2 199 3.03e+01 1am2 b.86.1.2 28381 1pyoB 105 3.05e+01 1jykA 254 3.07e+01 c.68.1.13 67458 1eueA 86 3.21e+01 1cyo d.120.1.1 59504 1whsA 255 3.25e+01 1ivyA c.69.1.5 34649 1khbA 625 3.30e+01 c.91.1.1,c.109.1.1 68606,68607 1t0qC 86 3.36e+01 d.15.12.1 106222 1ua4A 455 3.37e+01 c.72.1.3 99128 1cmcA 104 3.42e+01 1cmbA a.43.1.5 17462 1u5uA 374 3.42e+01 1bdb 277 3.47e+01 1bdb c.2.1.2 29874 1gzsB 165 3.53e+01 a.168.1.1 76425 2pspA 106 3.56e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 2fcr 173 3.61e+01 1rcf c.23.5.1 31151 1zcjA 463 3.82e+01 1q35A 320 3.82e+01 c.94.1.1 95661 2f4mB 61 3.84e+01 1gmuA 143 3.87e+01 b.107.1.1,d.58.38.1 65335,65336 2c4jA 218 3.90e+01 1jvr 137 3.96e+01 1jvr a.61.1.2 18132 1qw9A 502 3.97e+01 b.71.1.2,c.1.8.3 96466,96467 2g8lA 299 4.25e+01 1cxzB 86 4.30e+01 1cxzB a.2.6.1 15705 1vp7A 100 4.31e+01 1amuA 563 4.39e+01 1amuA e.23.1.1 43351 2fueA 262 4.50e+01 1gvdA 52 4.51e+01 a.4.1.3 83338 1zz1A 369 4.57e+01 1mun 225 4.60e+01 1mun a.96.1.2 18744 1zp4A 304 4.60e+01 1kblA 873 4.61e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1wwuA 99 4.66e+01 1jsuC 84 4.67e+01 1jsuC j.55.1.1 46339 1x52A 124 4.68e+01 2a7kA 250 4.85e+01 1nz0A 118 4.93e+01 d.14.1.2 86433 1v4xB 146 4.95e+01 a.1.1.2 108364 1hx1B 114 4.99e+01 1hx1B a.7.7.1 61350 1gw5S 142 5.03e+01 d.110.4.2 70633 1ekjA 221 5.07e+01 1ekjB c.53.2.1 33364 1kthA 58 5.11e+01 g.8.1.1 68863 1itbB 315 5.18e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1nmoA 247 5.31e+01 c.135.1.1 91980 2cmwA 310 5.52e+01 1i3zA 103 5.59e+01 d.93.1.1 83667 2hekA 371 5.83e+01 2d0oA 610 6.01e+01 1xmpA 170 6.07e+01 1qpaA 345 6.14e+01 1arv a.93.1.1 18585 1bqbA 301 6.15e+01 1hyt d.92.1.2 58962 2dkaA 544 6.16e+01 1e9rA 437 6.41e+01 c.37.1.11 64827 1tp6A 128 6.42e+01 d.17.4.12 107184 2h79A 269 6.43e+01 1hyp 80 6.49e+01 1hyp a.52.1.1 17806 1djtA 64 6.57e+01 1aho g.3.7.1 44132 1gr0A 367 6.65e+01 c.2.1.3,d.81.1.3 70379,70380 1heiA 451 6.71e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1zd7A 159 6.73e+01 2atzA 180 6.76e+01 1dozA 309 6.78e+01 1ak1 c.92.1.1 35592 2bhoA 130 6.81e+01 2bsjA 133 6.82e+01 2c4wA 176 7.05e+01 1vhoA 346 7.07e+01 b.49.3.1,c.56.5.4 100694,100695 1ojrA 274 7.08e+01 c.74.1.1 93147 1wjgA 137 7.10e+01 1v9sA 208 7.17e+01 1q1aA 289 7.25e+01 c.31.1.5 95561 1elvA 333 7.50e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 2ddfA 257 7.60e+01 1puc 105 7.61e+01 1puc d.97.1.1 40675 1cjxA 357 7.61e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1x91A 153 7.96e+01 1vplA 256 7.99e+01 1tz0A 114 8.07e+01 d.58.4.5 107463 1m9xC 146 8.11e+01 a.73.1.1 84907 1mba 147 8.14e+01 2fal a.1.1.2 15149 1aqcA 172 8.19e+01 1x11A b.55.1.2 26983 1qwgA 251 8.23e+01 c.1.27.1 96473 1q4uA 151 8.42e+01 d.38.1.5 95828 1ew4A 106 8.58e+01 1ew4A d.82.2.1 40023 1o63A 219 8.68e+01 c.94.1.1 92540 2sqcA 631 8.68e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1n00A 321 8.71e+01 a.65.1.1 85241 1l5oA 356 8.71e+01 c.39.1.1 77711 2coeA 120 8.79e+01 1ofzA 312 8.84e+01 b.68.8.1 86978