# List of top-scoring protein chains for T0386.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r6xA 395 1.95e+00 b.122.1.3,c.26.1.5 97167,97168 1g8fA 511 2.57e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1jecA 510 2.68e+00 b.122.1.3,c.26.1.5,c.37.1.15 66595,66596,66597 1j70A 514 2.69e+00 b.122.1.3,c.26.1.5,c.37.1.15 84118,84119,84120 1kcfA 258 2.78e+00 a.140.2.1,c.55.3.7 68434,68435 1d5rA 324 3.72e+00 1d5rA b.7.1.1,c.45.1.1 23181,32697 2cohA 202 4.08e+00 2g3mA 693 7.00e+00 1i9sA 210 7.27e+00 1i9sA c.45.1.1 62099 1s7uA 338 9.47e+00 b.1.1.2,d.19.1.1 98673,98674 2c46A 241 1.05e+01 1kxrA 339 1.16e+01 d.3.1.3 73175 1yvcA 70 1.17e+01 2grjA 192 1.20e+01 1eexA 554 1.43e+01 1dioA c.1.19.3 29650 1ysrA 150 1.44e+01 1tz0A 114 1.63e+01 d.58.4.5 107463 1ojuA 294 1.67e+01 c.2.1.5,d.162.1.1 103990,103991 1zejA 293 1.75e+01 1e0eA 55 1.76e+01 1wjcA a.4.10.1 59147 2pspA 106 2.06e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1pcp 106 2.06e+01 2pspA g.16.1.1,g.16.1.1 44742,44743 1e6vA 553 2.13e+01 1mroA a.89.1.1,d.58.31.2 18527,39445 2d0sA 79 2.22e+01 2fddA 100 2.27e+01 1n3nA 280 2.45e+01 b.1.1.2,d.19.1.1 85303,85304 1jpfA 281 2.46e+01 b.1.1.2,d.19.1.1 67016,67017 2g8jA 339 2.50e+01 2cuiA 112 2.68e+01 1ifqA 138 2.83e+01 1ifqA d.110.4.1 62350 1g12A 167 2.94e+01 1ge5A d.92.1.12 60193 1zin 217 3.10e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1e8rA 50 3.43e+01 1e8rA g.29.1.1 44960 1s1eA 224 3.50e+01 3ldh 330 3.51e+01 3ldh i.12.1.1 46015 2a5vA 213 3.58e+01 1ym3A 215 3.61e+01 2g7cA 255 3.63e+01 1s6cA 183 3.69e+01 a.39.1.5 98594 1bmbA 123 4.00e+01 1griA d.93.1.1 40466 1awpA 92 4.13e+01 1cyo d.120.1.1 41071 2cp9A 64 4.21e+01 1bm2A 117 4.31e+01 1griA d.93.1.1 40467 1i10A 331 4.55e+01 3ldh c.2.1.5,d.162.1.1 61499,61500 1fyrA 114 4.59e+01 1griA d.93.1.1 40469 2bddA 182 5.09e+01 2crpA 150 5.20e+01 1r0pA 312 5.32e+01 d.144.1.7 96734 1iymA 55 5.37e+01 g.44.1.1 83806 1iziA 99 5.44e+01 b.50.1.1 76990 1xbsA 149 5.45e+01 2az9A 99 5.46e+01 1proA 99 5.57e+01 1fmb b.50.1.1 26509 1cfh 47 5.58e+01 1cfh g.32.1.1 44972 2az8A 99 5.64e+01 1nd1A 202 5.76e+01 d.92.1.9 91808 1njrA 284 5.87e+01 c.50.1.2 103858 1qxpA 900 5.93e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 1icpA 376 5.97e+01 1oyc c.1.4.1 62270 1ck1A 239 6.06e+01 b.40.2.2,d.15.6.1 70067,70068 1f5aA 513 6.09e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1q79A 514 6.12e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1lldA 319 6.13e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1nl0G 51 6.34e+01 g.32.1.1 91944 1zbsA 291 6.41e+01 2czsA 80 6.43e+01 2azbA 99 6.61e+01 1b64 91 6.65e+01 1b64 d.58.12.1 39306 1sumB 235 6.73e+01 a.7.12.1 106025 1ypqA 135 6.94e+01 1r9wA 145 7.04e+01 d.89.1.2 97264 1zcmA 321 7.29e+01 1unlD 208 7.32e+01 1q90G 37 7.46e+01 f.23.26.1 96244 1ltdA 506 7.50e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1szeA 511 7.59e+01 c.1.4.1 106151 1h3gA 601 7.60e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1kbiA 511 7.61e+01 c.1.4.1,d.120.1.1 72277,72278 1szfA 511 7.63e+01 c.1.4.1 106153 2fueA 262 7.68e+01 1lcoA 511 7.69e+01 1gox c.1.4.1,d.120.1.1 28624,41088 1p3hA 99 7.89e+01 b.35.1.1 87734 2g15A 318 7.99e+01 2aryA 351 8.00e+01 1rc6A 261 8.16e+01 b.82.1.11 97287 1budA 197 8.46e+01 1atlA d.92.1.9 40328 1sjvA 114 8.46e+01 b.1.1.1 105662 1k47A 337 8.48e+01 d.14.1.5,d.58.26.4 72040,72041 2g63A 726 8.59e+01 1x70A 728 8.62e+01 1tk3A 728 8.63e+01 b.70.3.1,c.69.1.24 107069,107070 1u8eA 728 8.64e+01 b.70.3.1,c.69.1.24 107733,107734 1pfqA 731 8.64e+01 b.70.3.1,c.69.1.24 88061,88062 2bgrA 738 8.69e+01 1r9mA 733 8.70e+01 b.70.3.1,c.69.1.24 104870,104871 1r9nA 739 8.75e+01 1wcyA 740 8.77e+01 1ya0A 497 8.78e+01