# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2c46A 241 1.37e-01 1i9sA 210 1.49e-01 1i9sA c.45.1.1 62099 2herA 368 4.11e-01 1x3xA 82 4.86e-01 1kqfC 217 9.10e-01 f.21.1.1 72874 1ow4A 129 1.80e+00 a.39.2.1 93628 2a5vA 213 2.10e+00 1ym3A 215 2.16e+00 2g0qA 173 2.96e+00 2d0sA 79 3.37e+00 1ylmA 144 4.06e+00 1dmhA 311 4.10e+00 1dmhA b.3.6.1 22633 1zbsA 291 4.58e+00 1r6xA 395 7.14e+00 b.122.1.3,c.26.1.5 97167,97168 1sfkA 76 7.36e+00 a.190.1.1 105488 2d2yA 145 8.34e+00 1d3gA 367 9.13e+00 1d3gA c.1.4.1 28600 1qbgA 272 1.05e+01 1d4aA c.23.5.3 31227 1i7hA 111 1.06e+01 d.15.4.1 71122 1s1eA 224 1.12e+01 2b0mA 393 1.18e+01 1ua4A 455 1.18e+01 c.72.1.3 99128 1tp4A 97 1.20e+01 a.189.1.1 107183 2cmwA 310 1.22e+01 1d4aA 273 1.27e+01 1d4aA c.23.5.3 31219 2clbA 188 1.29e+01 1irdA 141 1.30e+01 a.1.1.2 66286 1babA 143 1.31e+01 1abwA a.1.1.2 15235 1ysrA 150 1.36e+01 1oqyA 368 1.38e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1u5uA 374 1.43e+01 2azqA 311 1.44e+01 1hx1B 114 1.46e+01 1hx1B a.7.7.1 61350 1t2dA 322 1.56e+01 c.2.1.5,d.162.1.1 99084,99085 1s6cA 183 1.69e+01 a.39.1.5 98594 1khbA 625 1.73e+01 c.91.1.1,c.109.1.1 68606,68607 1ckiA 317 1.73e+01 1csn d.144.1.7 41660 1eexA 554 1.74e+01 1dioA c.1.19.3 29650 1zcjA 463 1.75e+01 1n46A 258 1.76e+01 a.123.1.1 85315 2c4jA 218 1.78e+01 2fbqA 235 1.78e+01 1uok 558 1.80e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1xw5A 217 1.81e+01 1wozA 177 1.98e+01 1puc 105 1.99e+01 1puc d.97.1.1 40675 2fha 183 2.03e+01 2fha a.25.1.1 16674 1ucpA 91 2.26e+01 a.77.1.5 99186 1eueA 86 2.37e+01 1cyo d.120.1.1 59504 1s8nA 205 2.43e+01 c.23.1.1 105374 1mun 225 2.63e+01 1mun a.96.1.2 18744 1ldg 316 2.72e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1j7yA 141 2.78e+01 a.1.1.2 66426 1o2dA 371 2.83e+01 e.22.1.2 86591 2fiqA 420 2.98e+01 1q35A 320 3.09e+01 c.94.1.1 95661 2h79A 269 3.11e+01 2gk9A 426 3.11e+01 1pyoB 105 3.13e+01 1x8gA 227 3.16e+01 2bi7A 384 3.18e+01 3rubS 123 3.34e+01 1rboC d.73.1.1 39616 1sqhA 312 3.43e+01 d.108.1.5 98966 1x8hA 228 3.45e+01 2eucA 130 3.47e+01 1zxcA 263 3.55e+01 2ddfA 257 3.56e+01 2gncA 60 3.58e+01 1ii5A 233 3.59e+01 c.94.1.1 62412 1zmbA 290 3.59e+01 1o7fA 469 3.65e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1gox 370 3.86e+01 1gox c.1.4.1 28607 1q4uA 151 3.97e+01 d.38.1.5 95828 1vp6A 138 4.00e+01 1ifqA 138 4.01e+01 1ifqA d.110.4.1 62350 1t1vA 93 4.13e+01 c.47.1.14 106278 1oxsC 353 4.17e+01 b.40.6.3,c.37.1.12 87519,87520 2a1xA 308 4.17e+01 1ypqA 135 4.19e+01 1m7xA 617 4.20e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1cmbA 104 4.22e+01 1cmbA a.43.1.5 17460 1bkcE 256 4.23e+01 1bkcA d.92.1.10 40333 1cxzB 86 4.25e+01 1cxzB a.2.6.1 15705 1g8fA 511 4.25e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1cmcA 104 4.31e+01 1cmbA a.43.1.5 17462 1xmpA 170 4.31e+01 1oxxK 353 4.32e+01 b.40.6.3,c.37.1.12 93715,93716 1tl9A 339 4.36e+01 1oe0A 230 4.55e+01 c.37.1.1 92788 1zm7A 230 4.60e+01 1icrA 217 4.62e+01 1vfrA d.90.1.1 62274 1n00A 321 4.64e+01 a.65.1.1 85241 1furA 467 4.74e+01 1furA a.127.1.1 19403 1fxxA 482 4.81e+01 1fxxA c.55.3.5 33726 1hm6A 346 5.08e+01 1avc a.65.1.1 18147 1djtA 64 5.28e+01 1aho g.3.7.1 44132 1pvdA 537 5.28e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1p5zB 263 5.32e+01 c.37.1.1 87815 1ojhA 65 5.33e+01 a.214.1.1 103976 1yd9A 193 5.39e+01 1q33A 292 5.46e+01 d.113.1.1 95657 1dozA 309 5.48e+01 1ak1 c.92.1.1 35592 1sumB 235 5.49e+01 a.7.12.1 106025 1ywqA 200 5.54e+01 1vr5A 547 5.68e+01 1vhoA 346 5.70e+01 b.49.3.1,c.56.5.4 100694,100695 2bvcA 486 5.71e+01 1bkcI 256 5.78e+01 1bkcA d.92.1.10 40334 1db1A 259 5.87e+01 1db1A a.123.1.1 19329 1cd31 152 5.90e+01 1cd31 2aa4A 289 5.96e+01 2cw9A 194 6.11e+01 1t4fM 110 6.13e+01 1bhdA 118 6.20e+01 1bkrA a.40.1.1 17398 1ykiA 217 6.27e+01 1u7gA 385 6.30e+01 f.44.1.1 107723 1yiiA 320 6.32e+01 1kv0A 66 6.34e+01 g.3.7.1 91040 1k0mA 241 6.41e+01 a.45.1.1,c.47.1.5 67949,67950 1jvr 137 6.48e+01 1jvr a.61.1.2 18132 1owfA 99 6.58e+01 a.55.1.1 87487 1jmvA 141 6.62e+01 c.26.2.4 66897 1v9sA 208 6.64e+01 1j0fA 100 6.77e+01 c.47.1.14 90739 1e0eA 55 6.80e+01 1wjcA a.4.10.1 59147 1j96A 323 6.82e+01 c.1.7.1 71616 1i9bA 217 6.86e+01 1i9bA b.96.1.1 62084 2bsjA 133 6.90e+01 1g291 372 6.99e+01 1g291 2axiA 115 7.03e+01 1h7cA 108 7.06e+01 a.7.5.1 70914 1g1eB 89 7.28e+01 1g1eB a.59.1.1 17931 1gmlA 178 7.28e+01 c.8.5.2 70273 1fx3A 169 7.38e+01 1fx3B d.33.1.1 38524 1ekjA 221 7.53e+01 1ekjB c.53.2.1 33364 2g8jA 339 7.54e+01 2ac4A 309 7.56e+01 1wudA 89 7.75e+01 1gakA 141 7.78e+01 1gakA a.19.1.1 16415 1yz1A 174 7.82e+01 1z4eA 153 7.91e+01 1pveA 72 7.97e+01 a.189.1.1 104322 1jlwA 219 7.98e+01 a.45.1.1,c.47.1.5 71741,71742 2bshA 125 8.04e+01 1n2fA 142 8.10e+01 d.227.1.1 79853 1woyA 500 8.13e+01 2a19B 284 8.20e+01 1iwhA 141 8.25e+01 a.1.1.2 76882 2d5xA 141 8.25e+01 2bhoA 130 8.32e+01 1i3zA 103 8.33e+01 d.93.1.1 83667 1bbzA 58 8.36e+01 1bbzA b.34.2.1 24477 1whnA 128 8.41e+01 1q60A 99 8.45e+01 7odcA 424 8.49e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 2f4mB 61 8.53e+01 1uu3A 310 8.61e+01 d.144.1.7 99999 1ie9A 259 8.62e+01 1db1A a.123.1.1 62318 1s1pA 331 8.63e+01 c.1.7.1 98350 2gasA 307 8.68e+01 1sw5B 275 8.77e+01 c.94.1.1 106070 2dhqA 146 8.84e+01 2dhqA c.23.13.1 31382 1aboA 62 8.92e+01 1bbzA b.34.2.1 24474 2au3A 407 8.92e+01