# List of top-scoring protein chains for t04-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9sA 210 2.20e-01 1i9sA c.45.1.1 62099 1i7hA 111 2.74e-01 d.15.4.1 71122 2c46A 241 3.99e-01 1dmhA 311 1.99e+00 1dmhA b.3.6.1 22633 1x3xA 82 2.13e+00 2herA 368 2.97e+00 1r6xA 395 3.65e+00 b.122.1.3,c.26.1.5 97167,97168 1kqfC 217 3.71e+00 f.21.1.1 72874 2clbA 188 3.79e+00 2a5vA 213 6.49e+00 1ym3A 215 7.49e+00 1ypqA 135 7.49e+00 1sfkA 76 7.54e+00 a.190.1.1 105488 1ylmA 144 8.35e+00 1xw5A 217 8.51e+00 1ysrA 150 8.98e+00 2c4jA 218 9.26e+00 1zejA 293 9.82e+00 1g8fA 511 9.94e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2g0qA 173 1.02e+01 1d3gA 367 1.05e+01 1d3gA c.1.4.1 28600 1ow4A 129 1.05e+01 a.39.2.1 93628 1zbsA 291 1.13e+01 1kv0A 66 1.17e+01 g.3.7.1 91040 2azqA 311 1.18e+01 1babA 143 1.33e+01 1abwA a.1.1.2 15235 1irdA 141 1.34e+01 a.1.1.2 66286 2cmwA 310 1.38e+01 1khbA 625 1.46e+01 c.91.1.1,c.109.1.1 68606,68607 1xzoA 174 1.50e+01 1zowA 313 1.50e+01 1ifqA 138 1.53e+01 1ifqA d.110.4.1 62350 1ua4A 455 1.66e+01 c.72.1.3 99128 1gmuA 143 1.67e+01 b.107.1.1,d.58.38.1 65335,65336 1xmpA 170 1.74e+01 1eexA 554 1.78e+01 1dioA c.1.19.3 29650 1cmbA 104 1.86e+01 1cmbA a.43.1.5 17460 1djtA 64 2.00e+01 1aho g.3.7.1 44132 1s1eA 224 2.35e+01 1t0qC 86 2.38e+01 d.15.12.1 106222 1zm7A 230 2.40e+01 1u7gA 385 2.41e+01 f.44.1.1 107723 1sumB 235 2.43e+01 a.7.12.1 106025 1zcjA 463 2.49e+01 2b25A 336 2.59e+01 1oe0A 230 2.61e+01 c.37.1.1 92788 1zd7A 159 2.65e+01 2b2nA 344 2.74e+01 1s6cA 183 2.74e+01 a.39.1.5 98594 1vj0A 380 2.74e+01 b.35.1.2,c.2.1.1 100786,100787 1cmcA 104 2.74e+01 1cmbA a.43.1.5 17462 1q35A 320 2.83e+01 c.94.1.1 95661 1zmbA 290 2.89e+01 1p5zB 263 2.90e+01 c.37.1.1 87815 1j7yA 141 2.92e+01 a.1.1.2 66426 1ckiA 317 3.12e+01 1csn d.144.1.7 41660 1vp6A 138 3.14e+01 1ldg 316 3.27e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1oqyA 368 3.30e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1t2dA 322 3.42e+01 c.2.1.5,d.162.1.1 99084,99085 1mun 225 3.48e+01 1mun a.96.1.2 18744 2d0sA 79 3.55e+01 1hx1B 114 3.77e+01 1hx1B a.7.7.1 61350 1jvr 137 3.86e+01 1jvr a.61.1.2 18132 2b0mA 393 3.88e+01 1i9bA 217 3.90e+01 1i9bA b.96.1.1 62084 1u5uA 374 3.95e+01 2bsjA 133 3.98e+01 2fha 183 4.12e+01 2fha a.25.1.1 16674 1f7zA 233 4.16e+01 5ptp b.47.1.2 59681 2d2yA 145 4.18e+01 1q4uA 151 4.25e+01 d.38.1.5 95828 1pveA 72 4.37e+01 a.189.1.1 104322 2gncA 60 4.46e+01 3rp2A 224 4.48e+01 1a7s b.47.1.2 26298 1gmlA 178 4.78e+01 c.8.5.2 70273 2a1xA 308 4.91e+01 1ojhA 65 4.93e+01 a.214.1.1 103976 1wozA 177 5.04e+01 1r0pA 312 5.09e+01 d.144.1.7 96734 1vhoA 346 5.13e+01 b.49.3.1,c.56.5.4 100694,100695 1j0fA 100 5.19e+01 c.47.1.14 90739 1nd4A 264 5.26e+01 d.144.1.6 91815 1kk8B 139 5.30e+01 a.39.1.5 77430 1pyoB 105 5.42e+01 2gk9A 426 5.45e+01 1j96A 323 5.47e+01 c.1.7.1 71616 1zz1A 369 5.50e+01 2a8lA 420 5.69e+01 2akaB 299 5.83e+01 1iwhA 141 5.93e+01 a.1.1.2 76882 2d5xA 141 6.13e+01 1s1pA 331 6.27e+01 c.1.7.1 98350 1zzgA 415 6.36e+01 2ar9A 278 6.50e+01 1cxzB 86 6.52e+01 1cxzB a.2.6.1 15705 4ptp 223 6.55e+01 1o2dA 371 6.59e+01 e.22.1.2 86591 1amuA 563 6.64e+01 1amuA e.23.1.1 43351 1oxxK 353 6.64e+01 b.40.6.3,c.37.1.12 93715,93716 2bhoA 130 6.64e+01 1knyA 253 6.78e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1m7xA 617 6.88e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2bshA 125 6.93e+01 2fbqA 235 6.93e+01 1fzrA 138 6.95e+01 1fzrA c.52.1.17 33336 1t1vA 93 6.95e+01 c.47.1.14 106278 1puc 105 6.96e+01 1puc d.97.1.1 40675 1oxsC 353 7.04e+01 b.40.6.3,c.37.1.12 87519,87520 1n46A 258 7.05e+01 a.123.1.1 85315 1jftA 340 7.12e+01 a.35.1.5,c.93.1.1 66652,66653 1db1A 259 7.19e+01 1db1A a.123.1.1 19329 1bkcE 256 7.27e+01 1bkcA d.92.1.10 40333 1bkcI 256 7.33e+01 1bkcA d.92.1.10 40334 1gakA 141 7.39e+01 1gakA a.19.1.1 16415 1ivyA 452 7.40e+01 1ivyA c.69.1.5 34654 1z2nX 324 7.42e+01 1ie9A 259 7.57e+01 1db1A a.123.1.1 62318 1wdcB 156 7.59e+01 1wdcB a.39.1.5 17302 1d4vA 117 7.61e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1ucpA 91 7.64e+01 a.77.1.5 99186 2cw9A 194 7.75e+01 1o7fA 469 7.94e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2d9bA 109 7.96e+01 1eueA 86 7.96e+01 1cyo d.120.1.1 59504 1cd31 152 7.98e+01 1cd31 1ekjA 221 8.01e+01 1ekjB c.53.2.1 33364 1ldjA 760 8.06e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1hyp 80 8.09e+01 1hyp a.52.1.1 17806 1jlwA 219 8.14e+01 a.45.1.1,c.47.1.5 71741,71742 1tp4A 97 8.16e+01 a.189.1.1 107183 1xm7A 195 8.19e+01 1icrA 217 8.21e+01 1vfrA d.90.1.1 62274 1ngkA 128 8.21e+01 a.1.1.1 85673 2bi7A 384 8.25e+01 1ux2A 212 8.27e+01 b.96.1.1 100132 1az9 457 8.30e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 2bwvA 440 8.42e+01 1g1eB 89 8.66e+01 1g1eB a.59.1.1 17931 1nmoA 247 8.70e+01 c.135.1.1 91980 5ptp 223 8.73e+01 5ptp b.47.1.2 25831 1dbqA 289 8.75e+01 1qpzA c.93.1.1 35666 2btcI 29 8.79e+01 g.3.2.1 44070 2ddfA 257 8.85e+01 1zxcA 263 8.90e+01 1ddjA 247 8.93e+01 5ptp b.47.1.2 26362