# List of top-scoring protein chains for t04-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1eA 224 1.44e+00 1zejA 293 1.89e+00 1g8fA 511 2.08e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2clbA 188 2.15e+00 1ysrA 150 2.16e+00 1sumB 235 2.28e+00 a.7.12.1 106025 1ylmA 144 2.48e+00 1r6xA 395 2.64e+00 b.122.1.3,c.26.1.5 97167,97168 2a5vA 213 2.75e+00 1ypqA 135 2.86e+00 1i7hA 111 2.90e+00 d.15.4.1 71122 1ym3A 215 3.06e+00 1tkkA 366 3.46e+00 c.1.11.2,d.54.1.1 107089,107090 1l6rA 227 3.73e+00 c.108.1.10 77768 1l5oA 356 3.88e+00 c.39.1.1 77711 2azqA 311 5.44e+00 1eexA 554 5.76e+00 1dioA c.1.19.3 29650 1vj0A 380 6.31e+00 b.35.1.2,c.2.1.1 100786,100787 1dmhA 311 6.53e+00 1dmhA b.3.6.1 22633 1mun 225 6.68e+00 1mun a.96.1.2 18744 1i9sA 210 7.03e+00 1i9sA c.45.1.1 62099 1xzoA 174 7.75e+00 1uohA 226 8.68e+00 d.211.1.1 99690 2c46A 241 9.46e+00 1zbsA 291 9.55e+00 1vp7A 100 1.01e+01 1t1vA 93 1.03e+01 c.47.1.14 106278 1j0fA 100 1.09e+01 c.47.1.14 90739 1s6cA 183 1.09e+01 a.39.1.5 98594 1zcjA 463 1.12e+01 2cohA 202 1.29e+01 1jpmA 366 1.42e+01 c.1.11.2,d.54.1.1 67031,67032 1gmuA 143 1.50e+01 b.107.1.1,d.58.38.1 65335,65336 1sfkA 76 1.55e+01 a.190.1.1 105488 1pyoB 105 1.57e+01 1gmlA 178 1.61e+01 c.8.5.2 70273 1ofzA 312 1.61e+01 b.68.8.1 86978 2b25A 336 1.62e+01 1ew4A 106 1.82e+01 1ew4A d.82.2.1 40023 1tl9A 339 1.83e+01 1eueA 86 1.83e+01 1cyo d.120.1.1 59504 2f4qA 346 1.83e+01 1cmbA 104 1.94e+01 1cmbA a.43.1.5 17460 1zin 217 1.95e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1fnuA 221 1.97e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1m2dA 110 1.99e+01 c.47.1.11 78476 1uok 558 2.02e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1w4vA 119 2.08e+01 2bbeA 108 2.12e+01 1uvzA 119 2.12e+01 1t0qC 86 2.41e+01 d.15.12.1 106222 1r3dA 264 2.43e+01 1mdwA 328 2.46e+01 d.3.1.3 84934 1d0vA 356 2.52e+01 1d0vA c.39.1.1 32476 1tk1A 260 2.59e+01 d.248.1.1 107066 1zd7A 159 2.62e+01 1qsgA 265 2.62e+01 1eny c.2.1.2 29935 1n2sA 299 2.71e+01 c.2.1.2 79857 1ifqA 138 2.71e+01 1ifqA d.110.4.1 62350 1r5iD 216 2.74e+01 a.202.1.1 97091 2bl2A 156 2.75e+01 1orvA 728 2.80e+01 b.70.3.1,c.69.1.24 87354,87355 1x84A 189 2.87e+01 1u7gA 385 2.99e+01 f.44.1.1 107723 1dfoA 417 3.00e+01 1bj4A c.67.1.4 34480 3rp2A 224 3.03e+01 1a7s b.47.1.2 26298 1gen 218 3.04e+01 1gen b.66.1.1 27536 2fztA 79 3.06e+01 2d0sA 79 3.06e+01 1cl1A 395 3.06e+01 1cl2A c.67.1.3 34395 1e54A 332 3.09e+01 1e54A f.4.3.1 59258 1ayfA 105 3.11e+01 1ayfA d.15.4.1 37684 2c4wA 176 3.12e+01 1rc6A 261 3.13e+01 b.82.1.11 97287 2drwA 363 3.13e+01 2d9bA 109 3.20e+01 1vhvA 268 3.21e+01 c.90.1.1 100704 2d83A 363 3.25e+01 1r6fA 310 3.28e+01 e.46.1.1 97149 1cmcA 104 3.29e+01 1cmbA a.43.1.5 17462 1oohA 126 3.36e+01 a.39.2.1 93383 1nt2A 210 3.37e+01 c.66.1.3 86149 1jr5A 90 3.41e+01 a.150.1.1 67113 1pa1A 310 3.41e+01 c.45.1.2 94404 1or7A 194 3.54e+01 a.4.13.2,a.177.1.1 87332,87333 1vs0A 310 3.55e+01 1woyA 500 3.58e+01 1uwsA 489 3.58e+01 c.1.8.4 108073 1unqA 125 3.59e+01 b.55.1.1 107968 1x1iA 752 3.59e+01 1h10A 125 3.59e+01 b.55.1.1 83446 1u2eA 289 3.60e+01 1vgjA 184 3.61e+01 1g72A 573 3.61e+01 4aahA b.70.1.1 27680 1rwzA 245 3.68e+01 d.131.1.2,d.131.1.2 98005,98006 2atzA 180 3.68e+01 2a1xA 308 3.69e+01 1ldg 316 3.71e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 2fi1A 190 3.73e+01 1ptvA 321 3.74e+01 1pty c.45.1.2 32665 1qlnA 883 3.79e+01 1cezA e.8.1.3 43111 1b04A 318 3.88e+01 1b04A d.142.2.2 41579 1ux8A 132 3.90e+01 2fgqX 332 3.93e+01 2g7oA 70 3.98e+01 1o5zA 442 3.98e+01 c.59.1.2,c.72.2.2 92530,92531 2fha 183 4.02e+01 2fha a.25.1.1 16674 1y71A 130 4.05e+01 1hztA 190 4.06e+01 1i9aA d.113.1.2 61459 2fueA 262 4.08e+01 1e9mA 106 4.09e+01 1ayfA d.15.4.1 59397 1k82A 268 4.14e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2vsgA 358 4.16e+01 2vsgA h.4.1.1 45780 1db1A 259 4.19e+01 1db1A a.123.1.1 19329 1dcqA 278 4.19e+01 1dcqA d.211.1.1,g.45.1.1 19178,45326 1t9xA 1049 4.19e+01 1bbzA 58 4.20e+01 1bbzA b.34.2.1 24477 1nw2A 105 4.29e+01 c.47.1.1 92215 2bt6A 108 4.31e+01 1hbnA 549 4.31e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1y60A 169 4.32e+01 1r2fA 319 4.34e+01 1r2fA a.25.1.2 16800 1hm6A 346 4.34e+01 1avc a.65.1.1 18147 1zzgA 415 4.36e+01 1wdcB 156 4.38e+01 1wdcB a.39.1.5 17302 1mroA 548 4.39e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 2dhqA 146 4.50e+01 2dhqA c.23.13.1 31382 2bshA 125 4.57e+01 2au3A 407 4.58e+01 1oxjA 173 4.59e+01 a.60.1.2,a.118.1.13 87517,87518 1dik 874 4.60e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1q60A 99 4.65e+01 1d3gA 367 4.74e+01 1d3gA c.1.4.1 28600 1im8A 244 4.76e+01 c.66.1.14 66212 1bo1A 416 4.77e+01 1bo1A d.143.1.2 41591 1jkoC 52 4.81e+01 a.4.1.2 66809 1n0qA 93 4.86e+01 k.37.1.1 79754 2bsjA 133 4.86e+01 2f71A 298 4.87e+01 1aqcA 172 4.90e+01 1x11A b.55.1.2 26983 1ge7A 167 4.90e+01 1ge5A d.92.1.12 60461 2d2yA 145 4.92e+01 2cglA 489 4.94e+01 1q2yA 140 5.01e+01 d.108.1.1 95655 1p3jA 217 5.03e+01 c.37.1.1,g.41.2.1 94022,94023 1nswA 105 5.11e+01 c.47.1.1 92097 1u5uA 374 5.12e+01 1uwmA 106 5.19e+01 1a8h 500 5.20e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1t3yA 141 5.23e+01 1yz4A 160 5.24e+01 2g8jA 339 5.33e+01 1ihbA 162 5.35e+01 1bd8 d.211.1.1 19161 2f8yA 223 5.38e+01 1jvr 137 5.46e+01 1jvr a.61.1.2 18132 2aelA 374 5.53e+01 1p5zB 263 5.60e+01 c.37.1.1 87815 3proC 166 5.74e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1rybA 212 5.83e+01 c.56.3.1 98098 1t2dA 322 5.85e+01 c.2.1.5,d.162.1.1 99084,99085 2f4mB 61 5.87e+01 1gowA 489 5.87e+01 1qvbA c.1.8.4 28981 1th8A 145 6.04e+01 d.122.1.3 106908 1zip 217 6.10e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1szwA 379 6.10e+01 d.265.1.4 99047 1lylA 504 6.12e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1eudA 311 6.18e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 2bfxA 284 6.21e+01 1lldA 319 6.26e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1zz1A 369 6.28e+01 2ad6A 571 6.34e+01 2g42A 79 6.41e+01 1wozA 177 6.51e+01 1nh1A 330 6.57e+01 e.45.1.1 91871 1y791 680 6.58e+01 1mc2A 122 6.61e+01 a.133.1.2 74622 1jqgA 433 6.67e+01 c.56.5.1,d.58.3.1 71791,71792 1s1hM 132 6.67e+01 i.1.1.1 105165 1vfqA 143 6.70e+01 1cjxA 357 6.72e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1puc 105 6.74e+01 1puc d.97.1.1 40675 2trxA 108 6.82e+01 1thx c.47.1.1 32719 1k9sA 237 6.85e+01 c.56.2.1 68359 1x42A 232 6.89e+01 1ot8A 239 6.96e+01 d.211.1.1 93507 1tzvA 142 6.96e+01 a.79.1.1 107526 1vlqA 337 6.96e+01 c.69.1.25 108848 2eu8A 216 7.15e+01 1b4rA 80 7.20e+01 1b4rA b.1.3.1 22072 1itbB 315 7.30e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1g7fA 298 7.35e+01 1pty c.45.1.2 60330 1fxxA 482 7.53e+01 1fxxA c.55.3.5 33726 1ogiA 303 7.53e+01 b.43.4.2,c.25.1.1 92914,92915 1je0A 236 7.53e+01 c.56.2.1 66581 1ie9A 259 7.54e+01 1db1A a.123.1.1 62318 1h05A 146 7.65e+01 c.23.13.1 76433 1g12A 167 7.77e+01 1ge5A d.92.1.12 60193 1e1oA 504 7.80e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2aqwA 332 7.85e+01 2bi7A 384 7.87e+01 1yyhA 253 7.93e+01 1gr0A 367 8.08e+01 c.2.1.3,d.81.1.3 70379,70380 1hyp 80 8.13e+01 1hyp a.52.1.1 17806 1llp 343 8.24e+01 1arv a.93.1.1 18578 1kk8B 139 8.33e+01 a.39.1.5 77430 1j2mA 99 8.34e+01 a.165.1.1 84018 1a0rP 245 8.35e+01 1b9yC c.47.1.6 33054 2h79A 269 8.36e+01 1n00A 321 8.37e+01 a.65.1.1 85241 1q7lB 88 8.47e+01 1xxsA 122 8.49e+01 1vdxA 184 8.55e+01 1hz4A 373 8.56e+01 a.118.8.2 65960 1t0qA 498 8.62e+01 a.25.1.2 106220 2aaiB 262 8.62e+01 1abrB b.42.2.1,b.42.2.1 25561,25562 2gncA 60 8.63e+01 1uumA 372 8.91e+01 c.1.4.1 100010 1g6hA 257 8.95e+01 1gajA c.37.1.12 60318 2h7bA 105 8.98e+01 1fzrA 138 9.00e+01 1fzrA c.52.1.17 33336