# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d0sA 79 1.62e+00 1t3yA 141 5.17e+00 1e0eA 55 7.28e+00 1wjcA a.4.10.1 59147 1r6xA 395 7.47e+00 b.122.1.3,c.26.1.5 97167,97168 2a1xA 308 7.48e+00 1o5zA 442 8.47e+00 c.59.1.2,c.72.2.2 92530,92531 1g8fA 511 9.02e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1vfqA 143 9.77e+00 1zbsA 291 9.92e+00 1xbsA 149 1.00e+01 2a5vA 213 1.02e+01 1t2lA 141 1.04e+01 1udmA 149 1.09e+01 d.109.1.2 107780 1zip 217 1.13e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1zin 217 1.17e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1xg1A 67 1.24e+01 1zxoA 291 1.39e+01 1g12A 167 1.43e+01 1ge5A d.92.1.12 60193 1s6cA 183 1.45e+01 a.39.1.5 98594 1d3gA 367 1.50e+01 1d3gA c.1.4.1 28600 2ftzA 284 1.63e+01 1ge7A 167 1.69e+01 1ge5A d.92.1.12 60461 2cq7A 49 1.71e+01 1ypqA 135 1.72e+01 1sumB 235 1.78e+01 a.7.12.1 106025 1hl9A 449 1.85e+01 b.71.1.3,c.1.8.11 90650,90651 1tz0A 114 1.92e+01 d.58.4.5 107463 1eexA 554 1.97e+01 1dioA c.1.19.3 29650 1ojhA 65 2.05e+01 a.214.1.1 103976 1t0qC 86 2.09e+01 d.15.12.1 106222 1r29A 127 2.18e+01 d.42.1.1 96856 1ofcX 304 2.18e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1njrA 284 2.20e+01 c.50.1.2 103858 1r6fA 310 2.45e+01 e.46.1.1 97149 1a9xA 1058 2.54e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1rwzA 245 2.55e+01 d.131.1.2,d.131.1.2 98005,98006 1whsA 255 2.56e+01 1ivyA c.69.1.5 34649 1cs0A 1073 2.61e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1b04A 318 2.62e+01 1b04A d.142.2.2 41579 1ym3A 215 2.69e+01 1whtA 256 2.72e+01 1ivyA c.69.1.5 34646 1vp7A 100 2.80e+01 1d5rA 324 2.85e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 2fueA 262 2.91e+01 1g7jA 107 2.99e+01 32c2A b.1.1.1 19932 1jfrA 262 3.07e+01 1jfrA c.69.1.16 34724 1s1eA 224 3.07e+01 1hx1B 114 3.21e+01 1hx1B a.7.7.1 61350 1p3jA 217 3.22e+01 c.37.1.1,g.41.2.1 94022,94023 1x52A 124 3.39e+01 1qwgA 251 3.51e+01 c.1.27.1 96473 1zfpE 98 3.60e+01 1griA d.93.1.1 40465 1rztA 331 3.72e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1yvcA 70 3.79e+01 1q1aA 289 3.91e+01 c.31.1.5 95561 1igqA 62 4.08e+01 b.34.1.3 66130 1gox 370 4.18e+01 1gox c.1.4.1 28607 1r0pA 312 4.23e+01 d.144.1.7 96734 1pa2A 306 4.27e+01 1bgp a.93.1.1 18693 2aobA 99 4.32e+01 2cohA 202 4.48e+01 2ae2A 260 4.49e+01 1bdb c.2.1.2 29945 1bo1A 416 4.71e+01 1bo1A d.143.1.2 41591 1neq 74 4.77e+01 1neq a.35.1.2 17063 1ifqA 138 4.98e+01 1ifqA d.110.4.1 62350 2eu8A 216 5.00e+01 2bcqA 335 5.16e+01 1o63A 219 5.17e+01 c.94.1.1 92540 2czsA 80 5.19e+01 1w0uA 55 5.24e+01 1j0fA 100 5.26e+01 c.47.1.14 90739 1z67A 135 5.30e+01 2agkA 260 5.60e+01 1bdyA 123 5.66e+01 1bdyA b.7.1.1 23190 1xsnA 335 5.67e+01 1e9rA 437 5.70e+01 c.37.1.11 64827 1sfkA 76 5.76e+01 a.190.1.1 105488 1ysrA 150 5.94e+01 1kcfA 258 6.04e+01 a.140.2.1,c.55.3.7 68434,68435 1r2zA 274 6.08e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2fbiA 142 6.10e+01 2db1A 118 6.17e+01 2b69A 343 6.32e+01 1p5zB 263 6.50e+01 c.37.1.1 87815 1xn8A 131 6.52e+01 1zp4A 304 6.56e+01 1ywwA 85 6.75e+01 2g8lA 299 6.85e+01 2a7kA 250 6.91e+01 1ov3A 138 6.92e+01 b.34.2.1,b.34.2.1 87451,87452 1mkeA 152 6.95e+01 b.55.1.4 79231 1k82A 268 7.11e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2h88C 140 7.14e+01 1orvA 728 7.21e+01 b.70.3.1,c.69.1.24 87354,87355 1yrkA 126 7.33e+01 1jpmA 366 7.36e+01 c.1.11.2,d.54.1.1 67031,67032 1mo7A 213 7.37e+01 d.220.1.1 85028 1kv0A 66 7.48e+01 g.3.7.1 91040 1i9bA 217 7.57e+01 1i9bA b.96.1.1 62084 2herA 368 7.60e+01 7atjA 308 7.61e+01 1bgp a.93.1.1 18673 1ugmA 125 7.69e+01 d.15.1.3 107827 1fwoA 35 7.70e+01 1fwoA g.3.16.1 60062 1oj5A 132 7.74e+01 d.110.3.8 93087 1yt5A 258 8.02e+01 1qw9A 502 8.06e+01 b.71.1.2,c.1.8.3 96466,96467 2atzA 180 8.07e+01 1qsgA 265 8.18e+01 1eny c.2.1.2 29935 1gvdA 52 8.19e+01 a.4.1.3 83338 1wlpB 138 8.27e+01 1x42A 232 8.33e+01 1v7pC 200 8.36e+01 c.62.1.1 108408 2fha 183 8.43e+01 2fha a.25.1.1 16674 1jvr 137 8.53e+01 1jvr a.61.1.2 18132 1g73C 121 8.54e+01 1g3fA g.52.1.1 45375 1tw6A 133 8.65e+01 1i3zA 103 8.83e+01 d.93.1.1 83667