# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9sA 210 1.30e-01 1i9sA c.45.1.1 62099 2c46A 241 3.29e-01 2herA 368 8.84e-01 1r6xA 395 1.54e+00 b.122.1.3,c.26.1.5 97167,97168 1g8fA 511 2.94e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1dmhA 311 3.10e+00 1dmhA b.3.6.1 22633 2g0qA 173 3.18e+00 1i7hA 111 3.98e+00 d.15.4.1 71122 2clbA 188 4.52e+00 2a5vA 213 4.64e+00 1ym3A 215 4.76e+00 1zbsA 291 4.84e+00 1ysrA 150 5.45e+00 2d0sA 79 6.81e+00 1ypqA 135 8.18e+00 1sfkA 76 8.41e+00 a.190.1.1 105488 1xw5A 217 8.78e+00 1ylmA 144 9.69e+00 2c4jA 218 1.02e+01 1zejA 293 1.08e+01 1s1eA 224 1.15e+01 1d3gA 367 1.18e+01 1d3gA c.1.4.1 28600 1eexA 554 1.22e+01 1dioA c.1.19.3 29650 1kqfC 217 1.35e+01 f.21.1.1 72874 2azqA 311 1.37e+01 1ifqA 138 1.44e+01 1ifqA d.110.4.1 62350 1ow4A 129 1.48e+01 a.39.2.1 93628 1x3xA 82 1.53e+01 1zcjA 463 1.56e+01 1r9kA 172 1.81e+01 a.168.1.1 104869 1cmbA 104 1.85e+01 1cmbA a.43.1.5 17460 1sumB 235 2.20e+01 a.7.12.1 106025 1gzsB 165 2.27e+01 a.168.1.1 76425 1s6cA 183 2.55e+01 a.39.1.5 98594 1eueA 86 2.56e+01 1cyo d.120.1.1 59504 1ucpA 91 2.58e+01 a.77.1.5 99186 1cmcA 104 2.64e+01 1cmbA a.43.1.5 17462 2cmwA 310 2.98e+01 1zxoA 291 2.98e+01 2b0mA 393 3.00e+01 1gmuA 143 3.05e+01 b.107.1.1,d.58.38.1 65335,65336 2a1xA 308 3.31e+01 1xmpA 170 3.50e+01 1heiA 451 3.61e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1h6zA 913 3.85e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1djtA 64 3.86e+01 1aho g.3.7.1 44132 1t0qC 86 3.98e+01 d.15.12.1 106222 1x84A 189 4.09e+01 1j0fA 100 4.14e+01 c.47.1.14 90739 1jvr 137 4.14e+01 1jvr a.61.1.2 18132 1wozA 177 4.26e+01 1gmlA 178 4.30e+01 c.8.5.2 70273 2fbqA 235 4.36e+01 1ckiA 317 4.59e+01 1csn d.144.1.7 41660 1u5uA 374 4.70e+01 1ojrA 274 4.77e+01 c.74.1.1 93147 1gox 370 4.85e+01 1gox c.1.4.1 28607 1qbgA 272 4.91e+01 1d4aA c.23.5.3 31227 2b25A 336 4.93e+01 1oqyA 368 5.03e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1e0eA 55 5.34e+01 1wjcA a.4.10.1 59147 2cohA 202 5.39e+01 2h88C 140 5.46e+01 1amuA 563 5.52e+01 1amuA e.23.1.1 43351 1mun 225 5.66e+01 1mun a.96.1.2 18744 1kk8B 139 5.68e+01 a.39.1.5 77430 1t1vA 93 5.73e+01 c.47.1.14 106278 2fha 183 5.85e+01 2fha a.25.1.1 16674 1irdA 141 5.90e+01 a.1.1.2 66286 1z4eA 153 5.90e+01 1babA 143 6.32e+01 1abwA a.1.1.2 15235 2d2yA 145 6.33e+01 1d4aA 273 6.34e+01 1d4aA c.23.5.3 31219 1fa0A 537 6.36e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1i3zA 103 6.40e+01 d.93.1.1 83667 1bkcI 256 6.42e+01 1bkcA d.92.1.10 40334 1bkcE 256 6.50e+01 1bkcA d.92.1.10 40333 1jlwA 219 6.68e+01 a.45.1.1,c.47.1.5 71741,71742 1bqbA 301 6.95e+01 1hyt d.92.1.2 58962 1ldg 316 6.96e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1r0pA 312 7.14e+01 d.144.1.7 96734 1wdcB 156 7.18e+01 1wdcB a.39.1.5 17302 1ua4A 455 7.26e+01 c.72.1.3 99128 2gk9A 426 7.26e+01 1pveA 72 7.48e+01 a.189.1.1 104322 1u7gA 385 7.52e+01 f.44.1.1 107723 1zt2B 212 7.54e+01 1ofzA 312 7.57e+01 b.68.8.1 86978 2ca6A 386 7.74e+01 1x52A 124 7.90e+01 2ge7A 108 7.96e+01 1szwA 379 7.96e+01 d.265.1.4 99047 1cd31 152 8.08e+01 1cd31 1ojhA 65 8.11e+01 a.214.1.1 103976 1t2dA 322 8.13e+01 c.2.1.5,d.162.1.1 99084,99085 1bdb 277 8.16e+01 1bdb c.2.1.2 29874 1q35A 320 8.29e+01 c.94.1.1 95661 1j2mA 99 8.31e+01 a.165.1.1 84018 1cxzB 86 8.43e+01 1cxzB a.2.6.1 15705 1hx1B 114 8.44e+01 1hx1B a.7.7.1 61350 1yzqA 170 8.49e+01 1zmbA 290 8.55e+01 1qw9A 502 8.56e+01 b.71.1.2,c.1.8.3 96466,96467 1hyp 80 8.59e+01 1hyp a.52.1.1 17806 2ddfA 257 8.75e+01 1khbA 625 8.78e+01 c.91.1.1,c.109.1.1 68606,68607 1gr0A 367 8.90e+01 c.2.1.3,d.81.1.3 70379,70380 1yrgA 385 8.95e+01 1yrgA c.10.1.2 30854 1sqhA 312 8.96e+01 d.108.1.5 98966 1i9bA 217 8.96e+01 1i9bA b.96.1.1 62084