# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i7hA 111 5.58e-01 d.15.4.1 71122 1r6xA 395 7.80e-01 b.122.1.3,c.26.1.5 97167,97168 1i9sA 210 1.15e+00 1i9sA c.45.1.1 62099 1x3xA 82 1.16e+00 1dmhA 311 1.20e+00 1dmhA b.3.6.1 22633 1g8fA 511 1.21e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1ypqA 135 1.39e+00 2c46A 241 2.08e+00 1kqfC 217 2.52e+00 f.21.1.1 72874 2akaB 299 2.81e+00 1d3gA 367 3.33e+00 1d3gA c.1.4.1 28600 2a5vA 213 4.10e+00 2g0qA 173 4.26e+00 1zejA 293 4.29e+00 1ym3A 215 4.41e+00 1s1eA 224 4.62e+00 1s6cA 183 4.79e+00 a.39.1.5 98594 1ow4A 129 5.47e+00 a.39.2.1 93628 1ysrA 150 5.63e+00 1zbsA 291 5.82e+00 2b0mA 393 6.16e+00 2clbA 188 6.38e+00 1ylmA 144 7.05e+00 2azqA 311 7.26e+00 1xzoA 174 7.31e+00 1l5oA 356 8.46e+00 c.39.1.1 77711 1sfkA 76 8.75e+00 a.190.1.1 105488 1d0vA 356 8.81e+00 1d0vA c.39.1.1 32476 2d0sA 79 1.00e+01 1sumB 235 1.03e+01 a.7.12.1 106025 1j0fA 100 1.07e+01 c.47.1.14 90739 1vp6A 138 1.10e+01 2a1xA 308 1.11e+01 1t0qC 86 1.21e+01 d.15.12.1 106222 2b25A 336 1.43e+01 2herA 368 1.44e+01 1u7gA 385 1.45e+01 f.44.1.1 107723 1cmbA 104 1.47e+01 1cmbA a.43.1.5 17460 1gmuA 143 1.47e+01 b.107.1.1,d.58.38.1 65335,65336 1f7zA 233 1.51e+01 5ptp b.47.1.2 59681 1vj0A 380 1.52e+01 b.35.1.2,c.2.1.1 100786,100787 1ucpA 91 1.58e+01 a.77.1.5 99186 1cmcA 104 1.72e+01 1cmbA a.43.1.5 17462 1uok 558 1.73e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1xw5A 217 1.78e+01 1eueA 86 1.84e+01 1cyo d.120.1.1 59504 1eexA 554 1.88e+01 1dioA c.1.19.3 29650 1t1vA 93 1.91e+01 c.47.1.14 106278 1qbgA 272 1.94e+01 1d4aA c.23.5.3 31227 4ptp 223 1.97e+01 1ifqA 138 2.00e+01 1ifqA d.110.4.1 62350 3rp2A 224 2.01e+01 1a7s b.47.1.2 26298 1gr0A 367 2.05e+01 c.2.1.3,d.81.1.3 70379,70380 1gmlA 178 2.15e+01 c.8.5.2 70273 1zxoA 291 2.15e+01 1d4aA 273 2.30e+01 1d4aA c.23.5.3 31219 1lvk 762 2.38e+01 1lvk b.34.3.1,c.37.1.9 24576,32173 1babA 143 2.53e+01 1abwA a.1.1.2 15235 2c4jA 218 2.63e+01 1bqbA 301 2.69e+01 1hyt d.92.1.2 58962 1irdA 141 2.69e+01 a.1.1.2 66286 1p5zB 263 2.78e+01 c.37.1.1 87815 1m2dA 110 2.82e+01 c.47.1.11 78476 2ge7A 108 2.82e+01 2bsjA 133 2.87e+01 1uwsA 489 2.89e+01 c.1.8.4 108073 1puc 105 2.93e+01 1puc d.97.1.1 40675 1ldg 316 2.93e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 5ptp 223 2.95e+01 5ptp b.47.1.2 25831 1q4uA 151 2.96e+01 d.38.1.5 95828 1dik 874 2.96e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1pyoB 105 2.99e+01 1t2dA 322 3.04e+01 c.2.1.5,d.162.1.1 99084,99085 1bkcE 256 3.05e+01 1bkcA d.92.1.10 40333 1kblA 873 3.07e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1bkcI 256 3.09e+01 1bkcA d.92.1.10 40334 1khbA 625 3.17e+01 c.91.1.1,c.109.1.1 68606,68607 1hj9A 226 3.22e+01 b.47.1.2 65845 2gz4A 207 3.24e+01 1r0pA 312 3.25e+01 d.144.1.7 96734 1gzsB 165 3.35e+01 a.168.1.1 76425 1zd7A 159 3.39e+01 1zcjA 463 3.40e+01 1ir6A 424 3.41e+01 c.107.1.2 71342 1jvr 137 3.44e+01 1jvr a.61.1.2 18132 1mctA 223 3.52e+01 5ptp b.47.1.2 25961 1s83A 223 3.60e+01 b.47.1.2 98718 1hbnA 549 3.69e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1j2mA 99 3.70e+01 a.165.1.1 84018 1zowA 313 3.71e+01 2a31A 223 3.76e+01 1cd31 152 3.88e+01 1cd31 2ddfA 257 3.90e+01 1zxcA 263 3.94e+01 1zm7A 230 4.00e+01 1oe0A 230 4.03e+01 c.37.1.1 92788 2d2yA 145 4.04e+01 1mroA 548 4.07e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 2d9bA 109 4.15e+01 1z4eA 153 4.30e+01 1gowA 489 4.33e+01 1qvbA c.1.8.4 28981 1d4vA 117 4.34e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1z2nX 324 4.49e+01 1aszB 490 4.55e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1d0yA 761 4.56e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 1r9kA 172 4.63e+01 a.168.1.1 104869 1va6A 518 4.66e+01 1vr5A 547 4.68e+01 1ua4A 455 4.68e+01 c.72.1.3 99128 1q60A 99 4.74e+01 2gk9A 426 4.80e+01 1vom 762 4.82e+01 1lvk b.34.3.1,c.37.1.9 24577,32174 1kv0A 66 4.86e+01 g.3.7.1 91040 7taa 478 4.87e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1n46A 258 4.89e+01 a.123.1.1 85315 1oqyA 368 4.89e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1zkiA 133 4.92e+01 1h9hE 223 4.93e+01 b.47.1.2 103810 1h6zA 913 5.06e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1v4vA 376 5.14e+01 c.87.1.3 100313 2b2nA 344 5.19e+01 1wwuA 99 5.26e+01 1mucA 373 5.27e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1dpo 223 5.32e+01 5ptp b.47.1.2 25975 1j7yA 141 5.35e+01 a.1.1.2 66426 1a8h 500 5.45e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1nt2A 210 5.47e+01 c.66.1.3 86149 1nmoA 247 5.60e+01 c.135.1.1 91980 1oxjA 173 5.64e+01 a.60.1.2,a.118.1.13 87517,87518 2dkaA 544 5.65e+01 2akaA 776 5.81e+01 2h79A 269 5.93e+01 2btcI 29 5.98e+01 g.3.2.1 44070 2nacA 393 6.10e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 2d4qA 257 6.11e+01 1rybA 212 6.12e+01 c.56.3.1 98098 1elvA 333 6.17e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1u5uA 374 6.19e+01 1gox 370 6.23e+01 1gox c.1.4.1 28607 1fobA 334 6.37e+01 c.1.8.3 83255 1ew4A 106 6.42e+01 1ew4A d.82.2.1 40023 1woyA 500 6.74e+01 1e9mA 106 6.76e+01 1ayfA d.15.4.1 59397 1uwmA 106 6.78e+01 1x84A 189 6.80e+01 1whsA 255 6.80e+01 1ivyA c.69.1.5 34649 1whtA 256 6.87e+01 1ivyA c.69.1.5 34646 1ddjA 247 7.13e+01 5ptp b.47.1.2 26362 1g40A 244 7.14e+01 1e5gA g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 44823,44824,44825,44826 1tx9A 151 7.17e+01 1fzrA 138 7.19e+01 1fzrA c.52.1.17 33336 1gctA 245 7.23e+01 5ptp b.47.1.2 26021 1i9bA 217 7.33e+01 1i9bA b.96.1.1 62084 1zzgA 415 7.36e+01 1ayfA 105 7.53e+01 1ayfA d.15.4.1 37684 1hyp 80 7.63e+01 1hyp a.52.1.1 17806 2a8lA 420 7.66e+01 2atzA 180 7.73e+01 1vhoA 346 7.84e+01 b.49.3.1,c.56.5.4 100694,100695 1zp4A 304 7.88e+01 1or7A 194 7.90e+01 a.4.13.2,a.177.1.1 87332,87333 2d83A 363 7.95e+01 2drwA 363 7.95e+01 1pjjA 271 8.06e+01 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1pveA 72 8.07e+01 a.189.1.1 104322 1nnjA 271 8.09e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1lu0A 29 8.09e+01 g.3.2.1 74255 1y9bA 90 8.17e+01 1pfvA 551 8.19e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1m2xA 223 8.19e+01 d.157.1.1 84764 1gcqC 70 8.29e+01 1gcpA b.34.2.1 60436 1db1A 259 8.30e+01 1db1A a.123.1.1 19329 2bhoA 130 8.31e+01 1v9sA 208 8.33e+01 2coeA 120 8.36e+01 1f4lA 551 8.37e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1e6eB 128 8.38e+01 1ayfA d.15.4.1 59300 1uvzA 119 8.50e+01 2g8lA 299 8.51e+01 1w4vA 119 8.55e+01 2bt6A 108 8.57e+01 1gsa 316 8.59e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1xmpA 170 8.62e+01 1djtA 64 8.65e+01 1aho g.3.7.1 44132 1l6rA 227 8.69e+01 c.108.1.10 77768 1nkxA 348 8.84e+01 c.94.1.2 91943 1mun 225 8.91e+01 1mun a.96.1.2 18744 1bb9 115 8.92e+01 1bb9 b.34.2.1 24554 1yseA 141 8.92e+01