# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d0sA 79 6.80e-01 1yvcA 70 1.12e+00 2azqA 311 3.03e+00 2h88C 140 3.47e+00 2czsA 80 3.93e+00 1dmhA 311 4.25e+00 1dmhA b.3.6.1 22633 1e0eA 55 4.92e+00 1wjcA a.4.10.1 59147 1tzyA 129 6.99e+00 a.22.1.1 107530 2fbwC 141 7.45e+00 1g8fA 511 8.01e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1hq3A 129 8.79e+00 1aoiC a.22.1.1 16434 1ytzT 107 9.11e+00 2a1xA 308 1.02e+01 1yl35 60 1.13e+01 1gk9A 260 1.14e+01 d.153.1.2 65246 2g0qA 173 1.16e+01 1gl4A 285 1.28e+01 d.22.1.2,g.3.11.5 65286,65287 1r6xA 395 1.28e+01 b.122.1.3,c.26.1.5 97167,97168 1rwzA 245 1.43e+01 d.131.1.2,d.131.1.2 98005,98006 1ypqA 135 1.57e+01 1e3aA 260 1.61e+01 1ajqA d.153.1.2 41838 1zbsA 291 1.77e+01 1vor2 58 1.82e+01 1mijA 152 1.89e+01 a.4.1.1 79150 1u08A 386 1.99e+01 c.67.1.1 107543 1ppjE 196 2.08e+01 b.33.1.1,f.23.12.1 104260,104261 1e8rA 50 2.27e+01 1e8rA g.29.1.1 44960 1r8oA 96 2.34e+01 b.42.4.1 104852 1m4vA 204 2.36e+01 b.40.2.2,d.15.6.1 74459,74460 1tp4A 97 2.40e+01 a.189.1.1 107183 1tz0A 114 2.73e+01 d.58.4.5 107463 1zin 217 2.81e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1xg1A 67 2.88e+01 1wh8A 111 2.88e+01 1zip 217 2.92e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1s6cA 183 2.98e+01 a.39.1.5 98594 2herA 368 2.98e+01 1jkvA 266 3.14e+01 a.25.1.3 71719 1xdtR 79 3.14e+01 1xdtR g.3.11.1 44296 1o9iA 266 3.17e+01 a.25.1.3 92671 1s1eA 224 3.23e+01 1m12A 84 3.29e+01 a.64.1.1 84745 1ge7A 167 3.31e+01 1ge5A d.92.1.12 60461 1igqA 62 3.32e+01 b.34.1.3 66130 1g1eB 89 3.32e+01 1g1eB a.59.1.1 17931 1g12A 167 3.38e+01 1ge5A d.92.1.12 60193 1qj2B 809 3.40e+01 1qj2B 1gox 370 3.41e+01 1gox c.1.4.1 28607 1xpxA 163 3.46e+01 1x58A 62 3.47e+01 1x3xA 82 3.58e+01 1x4rA 99 3.78e+01 1g7jA 107 3.79e+01 32c2A b.1.1.1 19932 1zoyC 140 3.84e+01 2ftzA 284 3.88e+01 1orvA 728 3.91e+01 b.70.3.1,c.69.1.24 87354,87355 1vfqA 143 3.95e+01 1t3yA 141 3.96e+01 1oohA 126 4.01e+01 a.39.2.1 93383 2cq7A 49 4.20e+01 1t2lA 141 4.36e+01 1hn6A 110 4.37e+01 g.61.1.1 76721 1k47A 337 4.39e+01 d.14.1.5,d.58.26.4 72040,72041 1yz4A 160 4.53e+01 1eueA 86 4.54e+01 1cyo d.120.1.1 59504 2ak3A 226 4.77e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1uk5A 111 4.83e+01 a.7.7.1 99487 1ojhA 65 4.90e+01 a.214.1.1 103976 1l8dA 112 4.91e+01 h.4.12.1 73687 2pspA 106 4.94e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1kx5C 128 4.96e+01 a.22.1.1 77595 1zczA 464 5.10e+01 1d3gA 367 5.11e+01 1d3gA c.1.4.1 28600 1vf5G 37 5.16e+01 f.23.26.1 100587 1i9bA 217 5.49e+01 1i9bA b.96.1.1 62084 1ysrA 150 5.52e+01 1zxiB 809 5.71e+01 1d4vA 117 5.74e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1bzg 34 5.76e+01 1bzg j.15.1.1 46166 1n62B 809 5.98e+01 d.41.1.1,d.133.1.1 80092,80093 1wy1A 172 6.29e+01 1xbsA 149 6.44e+01 2b8nA 429 6.54e+01 2coeA 120 6.73e+01 1uw4A 91 6.74e+01 d.58.7.4 100071 1vgyA 393 6.80e+01 c.56.5.4,d.58.19.1 100620,100621 1q1aA 289 7.01e+01 c.31.1.5 95561 2fbwD 103 7.10e+01 1aqm 453 7.26e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1p3jA 217 7.45e+01 c.37.1.1,g.41.2.1 94022,94023 2h88D 103 7.51e+01 1b04A 318 7.79e+01 1b04A d.142.2.2 41579 1zxoA 291 7.92e+01 1ifqA 138 8.04e+01 1ifqA d.110.4.1 62350 1o5zA 442 8.07e+01 c.59.1.2,c.72.2.2 92530,92531 1j6rA 214 8.19e+01 d.173.1.2 71598 2a7wA 116 8.32e+01 1hx1B 114 8.58e+01 1hx1B a.7.7.1 61350