(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
-
-
- gi|24940342|emb|CAD37389.1|_249:323 putative cell filamentation protein [Bartonella tribocorum]
-
- gi|49238831|emb|CAF28112.1|_223:297 hypothetical protein [Bartonella henselae str. Houston-1]
- gi|56368457|emb|CAD89508.1| BepB protein [Bartonella henselae]
- gi|49476023|ref|YP_034064.1| hypothetical protein BH13390 [Bartonella henselae str. Houston-1]
-
- gi|49238829|emb|CAF28110.1|_225:299 Putative cell filamentation protein [Bartonella henselae str. Houston-1]
- gi|56368455|emb|CAD89506.1| BepA protein [Bartonella henselae]
- gi|49476021|ref|YP_034062.1| Putative cell filamentation protein [Bartonella henselae str. Houston-1]
-
- gi|49238832|emb|CAF28113.1|_212:286 Putative cell filamentation protein [Bartonella henselae str. Houston-1]
- gi|56368458|emb|CAD89509.1| BepC protein [Bartonella henselae]
- gi|49476024|ref|YP_034065.1| Putative cell filamentation protein [Bartonella henselae str. Houston-1]
-
- gi|49240093|emb|CAF26532.1|_212:287 Putative cell filamentation protein [Bartonella quintana str. Toulouse]
- gi|49474589|ref|YP_032631.1| Putative cell filamentation protein [Bartonella quintana str. Toulouse]
10 20 30 40 50 60
| | | | | |
1 LLKEFMHTMKNTG.RNVNDRPVMVAKEGETYTGTYRGAGLEGFALNVKGA.YIIGNIDHLPPEQL
2 LLKEFMSNMKELG.RDINDRSVMVTKEGETYTGTYRGAGHDSLAFNVNGA.YIIGDKEDLTPEQL
3 LLKDFMNNINNTG.RNVNDCLVMVTKAGETYRGTYQGCYSEAFVLDMQGT.YIIGKKDDLTPERL
4 LLKEFMHTMKNTG.RNVNDRPVMVAKEGETYTGTYRGAGLEGFALNVKGA.YIIGNIDHLPPEQL
5 LLKEFISQMRNSGlEEINEHIVVVAKEGVKYDGIYKGCAAEGFVIELEDG.FVVGHKDDLTPEQV
6 LLKEFISQMRSARlDEINNHIVLAAKEGVTYDGIYKGSSAEGFVIEVEGGtFIVGHKDDLKPEQV
70
|
1 KILKPGDKITFT
2 KTLKPGDKFTFT
3 KSLKPGDTITFI
4 KILKPGDKITFT
5 KTLQNGDRIVF-
6 KILQNGDFISF-