# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xzpB 150 1.05e+00 2h6lA 146 1.76e+00 1ts9A 102 1.88e+00 1khoA 370 1.98e+00 a.124.1.1,b.12.1.3 72489,72490 1zx5A 300 2.30e+00 1v3fA 120 2.66e+00 a.4.5.31 100289 1m2eA 135 2.70e+00 c.23.1.5 78478 1vjtA 483 3.30e+00 c.2.1.5,d.162.1.2 100833,100834 1kg0C 136 3.71e+00 d.169.1.1 72445 1c20A 128 3.80e+00 1c20A a.4.3.1 16079 1ha3A 405 4.17e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1kqqA 139 4.74e+00 a.4.3.1 72885 1s5aA 150 5.19e+00 d.17.4.10 98525 1spiA 358 5.23e+00 1frpA e.7.1.1 42939 1mgqA 83 5.37e+00 b.38.1.1 79099 1i81A 83 5.37e+00 1d3bB b.38.1.1 61930 2gaeA 346 5.41e+00 1dqeA 137 5.72e+00 1dqeA a.39.2.1 17388 1pdkB 157 7.01e+00 1pdkB b.2.3.2 22427 1l6pA 125 9.19e+00 b.1.17.1 73626 1xw3A 110 9.47e+00 1xw4X 110 9.57e+00 1xfrA 128 9.88e+00 1hcz 252 1.02e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 1gm0A 142 1.07e+01 a.39.2.1 65297 1drw 273 1.13e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1ux6A 350 1.14e+01 b.29.1.16,g.75.1.1 100145,100146 1iirA 415 1.19e+01 1iirA c.87.1.5 62453 1dcuA 357 1.32e+01 1frpA e.7.1.1 42943 1eft 405 1.35e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1dih 273 1.44e+01 1drw c.2.1.3,d.81.1.3 30056,39971 1jpeA 151 1.52e+01 b.1.17.1 77146 1c8bA 371 1.58e+01 1c8bA c.56.1.2 59082 2ae0X 345 1.60e+01 2fwkA 121 1.60e+01 2pcfB 250 1.62e+01 1hcz i.4.1.1 45911 1bxdA 161 1.63e+01 1bxdA d.122.1.3 41111 1ls8A 142 1.70e+01 a.39.2.1 78176 1arzC 273 1.87e+01 1drw c.2.1.3,d.81.1.3 30061,39976 1yzsA 121 1.89e+01 1y14B 171 1.97e+01 1b00A 127 2.01e+01 3chy c.23.1.1 31122 1p5sA 203 2.02e+01 a.40.1.1 94147 1exmA 405 2.07e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1f5wA 126 2.14e+01 1f5wA b.1.1.1 19705 1p2xA 159 2.16e+01 a.40.1.1 104062 1x9bA 53 2.30e+01 1eajA 126 2.35e+01 1f5wA b.1.1.1 59401 1vm6A 228 2.37e+01 c.2.1.3,d.81.1.3 108876,108877 2b6nA 278 2.44e+01 1ig0A 319 2.45e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1jbjA 186 2.64e+01 b.1.1.4,b.1.1.4 66482,66483 1zp7A 206 2.67e+01 2c78A 405 2.72e+01 1dhn 121 2.75e+01 1dhn d.96.1.3 40663 1dfcA 493 2.79e+01 1dfcA b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1s4cA 155 3.01e+01 1g2cL 43 3.02e+01 1g2cL 1zoyB 252 3.03e+01 1aipE 405 3.20e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25699,25739,32134 1ruxA 951 3.28e+01 1dhx 1g2cB 43 3.30e+01 1g2cB 1p30A 952 3.33e+01 b.121.2.2,b.121.2.2 93964,93965 1sseB 86 3.41e+01 1v5iB 76 3.47e+01 1uz5A 402 3.59e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1zghA 260 3.62e+01 1xg9A 260 3.63e+01 1jopA 155 3.72e+01 b.82.2.7 84187 1yo8A 634 3.86e+01 1m8aA 70 4.01e+01 d.9.1.1 74579 1ky3A 182 4.15e+01 c.37.1.8 73193 1ju5A 109 4.30e+01 d.93.1.1 77173 1dbhA 354 4.34e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1ospH 218 4.51e+01 1igtB b.1.1.1,b.1.1.2 20117,21147 1q15A 503 4.81e+01 c.26.2.1,d.153.1.1 95538,95539 1p2zA 968 4.94e+01 b.121.2.2,b.121.2.2 93962,93963 1qqcA 773 5.00e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 2hciA 69 5.03e+01 1aipA 405 5.05e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2gp5A 349 5.13e+01 1mioB 458 5.29e+01 1qguB c.92.2.3 35602 1awe 130 5.50e+01 1awe b.55.1.1 26968 2ha8A 184 5.53e+01 1t3kA 152 5.60e+01 c.46.1.1 106357 1yavA 159 5.77e+01 2g9zA 348 5.80e+01 1h0aA 158 5.84e+01 a.118.9.1 76434 1eikA 77 5.87e+01 1eikA d.78.1.1 39751 2h88B 252 5.93e+01 1fyhA 258 6.03e+01 1d9cA a.26.1.3,a.26.1.3 16907,16908 2d9rA 104 6.05e+01 2myo 118 6.24e+01 2myo d.211.1.1 19175 1hp0A 339 6.24e+01 c.70.1.1 65900 1idrA 136 6.39e+01 1dlyA a.1.1.1 62301 1zy9A 564 6.40e+01 1ibzA 112 6.41e+01 1ibzA b.6.1.4 62237 1avaC 181 6.44e+01 1avaC b.42.4.1 25604 2ew0A 192 6.49e+01 1uq5A 263 6.55e+01 d.165.1.1 99778 1iawA 317 6.55e+01 c.52.1.9 62126 1zq1A 438 6.69e+01 1cjbA 231 6.78e+01 1qk3A c.61.1.1 34079 1s1hC 192 6.78e+01 i.1.1.1 105156 2hfh 109 6.95e+01 2hfh a.4.5.14 16145 2fb7A 95 7.00e+01 1f32A 149 7.05e+01 1f32A d.62.1.1 39539 1hkcA 917 7.10e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33475,33476,33477,33478 1s7hA 200 7.21e+01 d.58.48.2 105349 2aifA 135 7.39e+01 1hozA 339 7.47e+01 c.70.1.1 65898 1bmtA 246 7.48e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1gtzA 156 7.48e+01 c.23.13.1 70539 1egr 85 7.52e+01 1kte c.47.1.1 32765 1obs 267 7.83e+01 1mrj d.165.1.1 42213 1j6wA 175 7.92e+01 1j98A d.185.1.2 62663 1zesA 125 8.15e+01 1d0iA 156 8.17e+01 2dhqA c.23.13.1 31383 1a54A 321 8.25e+01 1ixh c.94.1.1 35763 1ev7B 317 8.26e+01 1ev7B c.52.1.9 33316 1pszA 303 8.32e+01 1toaA c.92.2.2 35600 1enwA 114 8.42e+01 1enwA a.5.4.1 16291 2ae6A 166 8.54e+01 1wi5A 119 8.67e+01 1dhx 967 8.74e+01 1dhx 1qhaA 917 8.88e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470