# TARGET T0386 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0386.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.02279 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 L 0.056 0.154 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.008 0.102 0.633 2 L 0.070 0.369 0.008 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.006 0.047 0.433 3 K 0.025 0.505 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.004 0.038 0.390 4 E 0.028 0.614 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.036 0.313 5 F 0.026 0.897 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.067 6 M 0.018 0.939 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.035 7 H 0.019 0.912 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.057 8 T 0.033 0.876 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.002 0.072 9 M 0.073 0.825 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.002 0.077 10 K 0.032 0.780 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.014 0.009 0.151 11 N 0.063 0.651 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.031 0.016 0.225 12 T 0.193 0.519 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.075 0.009 0.193 13 G 0.245 0.272 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.015 0.076 0.028 0.343 14 R 0.030 0.045 0.366 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.005 0.003 0.001 0.001 0.021 0.008 0.141 0.366 15 N 0.053 0.025 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.030 0.002 0.003 0.004 0.001 0.002 0.001 0.074 0.009 0.159 0.621 16 V 0.088 0.028 0.002 0.002 0.002 0.001 0.002 0.001 0.042 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.103 0.011 0.115 0.599 17 N 0.054 0.049 0.003 0.001 0.003 0.005 0.004 0.003 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.100 0.007 0.233 0.534 18 D 0.186 0.029 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.142 0.056 0.163 0.412 19 R 0.300 0.020 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.086 0.020 0.280 0.285 20 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 21 V 0.004 0.001 0.001 0.001 0.037 0.028 0.008 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.570 0.004 0.076 0.255 22 M 0.005 0.002 0.001 0.001 0.004 0.005 0.005 0.009 0.001 0.001 0.001 0.001 0.002 0.032 0.002 0.002 0.838 0.001 0.017 0.077 23 V 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.145 0.046 0.004 0.002 0.533 0.001 0.022 0.225 24 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.026 0.001 0.002 0.007 0.001 0.001 0.001 0.889 0.001 0.010 0.057 25 K 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.370 0.009 0.003 0.002 0.004 0.002 0.002 0.004 0.241 0.001 0.072 0.286 26 E 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.329 0.007 0.085 0.558 27 G 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.004 0.002 0.003 0.003 0.001 0.001 0.174 0.016 0.080 0.693 28 E 0.514 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.015 0.074 0.321 29 T 0.012 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.002 0.074 0.787 30 Y 0.005 0.004 0.001 0.002 0.379 0.083 0.046 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.267 0.002 0.016 0.177 31 T 0.020 0.010 0.002 0.001 0.017 0.030 0.010 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.147 0.005 0.108 0.632 32 G 0.021 0.010 0.002 0.001 0.003 0.002 0.003 0.004 0.003 0.002 0.005 0.001 0.013 0.008 0.006 0.007 0.496 0.005 0.065 0.343 33 T 0.055 0.013 0.001 0.001 0.001 0.002 0.002 0.006 0.001 0.004 0.001 0.002 0.005 0.007 0.007 0.010 0.270 0.008 0.102 0.502 34 Y 0.024 0.017 0.002 0.001 0.003 0.001 0.005 0.002 0.014 0.006 0.005 0.006 0.049 0.046 0.049 0.016 0.399 0.003 0.050 0.302 35 R 0.023 0.019 0.006 0.001 0.005 0.002 0.001 0.002 0.006 0.004 0.005 0.008 0.016 0.019 0.009 0.005 0.288 0.004 0.108 0.469 36 G 0.017 0.011 0.005 0.002 0.004 0.001 0.001 0.001 0.038 0.009 0.014 0.018 0.107 0.049 0.009 0.002 0.173 0.006 0.069 0.467 37 A 0.103 0.011 0.010 0.002 0.004 0.001 0.001 0.001 0.005 0.006 0.007 0.002 0.007 0.001 0.001 0.001 0.153 0.009 0.088 0.588 38 G 0.046 0.018 0.006 0.003 0.001 0.002 0.002 0.001 0.074 0.049 0.003 0.001 0.001 0.001 0.001 0.001 0.092 0.005 0.094 0.602 39 L 0.131 0.026 0.009 0.003 0.017 0.003 0.002 0.001 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.007 0.109 0.568 40 E 0.058 0.054 0.004 0.003 0.004 0.005 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.119 0.006 0.167 0.573 41 G 0.206 0.050 0.005 0.003 0.047 0.007 0.010 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.143 0.019 0.091 0.410 42 F 0.217 0.115 0.012 0.006 0.006 0.010 0.009 0.004 0.001 0.001 0.001 0.001 0.002 0.003 0.008 0.003 0.307 0.012 0.051 0.235 43 A 0.024 0.088 0.004 0.001 0.075 0.015 0.014 0.011 0.002 0.001 0.002 0.001 0.003 0.011 0.002 0.002 0.514 0.003 0.027 0.200 44 L 0.008 0.049 0.002 0.001 0.007 0.017 0.011 0.007 0.001 0.001 0.006 0.003 0.355 0.061 0.005 0.001 0.392 0.001 0.008 0.064 45 N 0.014 0.044 0.002 0.001 0.002 0.002 0.007 0.002 0.001 0.009 0.004 0.001 0.017 0.002 0.001 0.001 0.764 0.003 0.017 0.109 46 V 0.015 0.025 0.004 0.001 0.001 0.001 0.001 0.001 0.420 0.023 0.003 0.001 0.001 0.001 0.001 0.001 0.350 0.002 0.016 0.137 47 K 0.007 0.053 0.011 0.001 0.001 0.001 0.001 0.001 0.033 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.544 0.005 0.040 0.300 48 G 0.016 0.019 0.018 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.235 0.013 0.091 0.600 49 A 0.281 0.014 0.010 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.253 0.022 0.076 0.333 50 Y 0.028 0.020 0.006 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.002 0.001 0.637 0.004 0.072 0.217 51 I 0.004 0.007 0.003 0.001 0.311 0.015 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.480 0.001 0.025 0.138 52 I 0.004 0.007 0.001 0.001 0.021 0.021 0.004 0.002 0.003 0.001 0.002 0.001 0.010 0.014 0.015 0.031 0.661 0.001 0.018 0.183 53 G 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.004 0.004 0.576 0.004 0.062 0.321 54 N 0.008 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.009 0.002 0.009 0.002 0.002 0.002 0.003 0.241 0.006 0.189 0.516 55 I 0.017 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.192 0.008 0.135 0.628 56 D 0.024 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.008 0.166 0.710 57 H 0.550 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.020 0.047 0.359 58 L 0.690 0.025 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.006 0.019 0.244 59 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.997 60 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 61 E 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.004 0.140 0.816 62 Q 0.349 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.009 0.202 0.408 63 L 0.281 0.537 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.002 0.165 64 K 0.053 0.573 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.120 0.009 0.021 0.209 65 I 0.131 0.358 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.019 0.095 0.008 0.382 66 L 0.434 0.221 0.012 0.001 0.001 0.001 0.009 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.103 0.054 0.011 0.147 67 K 0.023 0.051 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.117 0.011 0.578 0.212 68 P 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.012 0.969 69 G 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.703 0.003 0.040 0.235 70 D 0.811 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.011 0.013 0.127 71 K 0.038 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.453 0.003 0.128 0.368 72 I 0.006 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.838 0.001 0.026 0.116 73 T 0.002 0.001 0.001 0.001 0.005 0.004 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.804 0.002 0.032 0.137 74 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.003 0.003 0.707 0.003 0.039 0.228 75 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.004 0.002 0.002 0.003 0.610 0.007 0.089 0.275