# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dhn 121 1.48e-01 1dhn d.96.1.3 40663 1zkdA 387 1.52e-01 1v54B 227 3.12e-01 b.6.1.2,f.17.2.1 100322,100323 1ofdA 1520 3.29e-01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1y14B 171 3.89e-01 2h6lA 146 5.14e-01 1u0mA 382 8.18e-01 c.95.1.2,c.95.1.2 107557,107558 1tc1A 220 8.66e-01 1tc1A c.61.1.1 34083 1c9oA 66 9.92e-01 1mjc b.40.4.5 25325 1kqqA 139 1.04e+00 a.4.3.1 72885 1hl9A 449 1.19e+00 b.71.1.3,c.1.8.11 90650,90651 1z7gA 217 1.58e+00 1bia 321 1.63e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1kwiA 101 1.68e+00 d.17.1.3 77564 4ubpC 570 2.15e+00 1ubpC b.92.1.1,c.1.9.2 28431,29053 2d9rA 104 2.26e+00 2basA 431 2.32e+00 2bs3A 656 2.42e+00 1wqaA 455 2.51e+00 1xxqA 161 2.66e+00 2aj6A 159 2.70e+00 1fr3A 67 2.90e+00 1fr3A b.40.6.1 25436 2cqsA 842 2.91e+00 1ugxA 133 2.93e+00 1qd6C 240 3.01e+00 1qd5A 1zd7A 159 3.49e+00 1vj0A 380 3.58e+00 b.35.1.2,c.2.1.1 100786,100787 1eajA 126 3.62e+00 1f5wA b.1.1.1 59401 1i0lA 221 3.84e+00 c.61.1.1 71096 2fb7A 95 4.17e+00 1xffA 240 4.65e+00 d.153.1.1 109580 1jmxA 494 4.88e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2cwpA 112 4.97e+00 1khoA 370 5.01e+00 a.124.1.1,b.12.1.3 72489,72490 2fwkA 121 5.71e+00 1l2mA 118 5.75e+00 d.89.1.4 77657 1l6pA 125 6.23e+00 b.1.17.1 73626 1j5wA 298 6.26e+00 d.104.1.1 71589 1d3bB 91 6.63e+00 1d3bB b.38.1.1 24804 1ts9A 102 6.63e+00 2a5zA 262 6.87e+00 1yavA 159 6.90e+00 2gzvA 114 7.46e+00 1ykjA 394 7.66e+00 1qzgA 187 7.66e+00 b.40.4.3 96643 1vrbA 342 7.85e+00 1k0iA 394 8.03e+00 c.3.1.2,d.16.1.2 67942,67943 8abp 306 9.06e+00 8abp c.93.1.1 35647 1h2kA 349 9.21e+00 b.82.2.6 76572 1e3dB 542 9.29e+00 1h2rL e.18.1.1 59189 1unqA 125 9.53e+00 b.55.1.1 107968 1qwrA 319 9.90e+00 b.82.1.3 96491 1a62 130 1.03e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 2gu2A 312 1.07e+01 1yzsA 121 1.23e+01 1vc3B 97 1.26e+01 1cbf 285 1.27e+01 1cbf c.90.1.1 35587 1zybA 232 1.27e+01 1jmuB 666 1.35e+01 1fsgA 233 1.38e+01 1qk3A c.61.1.1 34029 2fcfA 103 1.40e+01 2ew0A 192 1.43e+01 1v7pB 128 1.67e+01 d.169.1.1 108407 1hw5A 210 1.73e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1ihjA 98 1.76e+01 1pdr b.36.1.1 62382 1uwzA 136 1.80e+01 c.97.1.1 108081 1kzlA 208 1.89e+01 b.43.4.3,b.43.4.3 77635,77636 1o7nB 194 1.92e+01 d.17.4.4 81164 1i6pA 220 1.92e+01 1ddzA c.53.2.1 61848 1fthA 122 2.03e+01 d.150.1.2 60028 1x74A 360 2.12e+01 1mgqA 83 2.16e+01 b.38.1.1 79099 1wsrA 375 2.19e+01 1v9nA 360 2.19e+01 2fdiA 211 2.20e+01 2gefA 217 2.27e+01 2c78A 405 2.35e+01 2h7bA 105 2.37e+01 1iz5A 249 2.46e+01 d.131.1.2,d.131.1.2 83834,83835 1xw3A 110 2.49e+01 1gxyA 226 2.50e+01 d.166.1.3 76380 1g2iA 166 2.64e+01 1g2iA c.23.16.2 31438 1dbhA 354 2.65e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1dl2A 511 2.67e+01 1dl2A a.102.2.1 18844 2a4dA 160 2.80e+01 1wzoA 246 2.87e+01 1yfuA 174 2.94e+01 2cu3A 64 2.96e+01 1faoA 126 3.10e+01 1faoA b.55.1.1 26974 1zx8A 136 3.12e+01 1op4A 159 3.13e+01 b.1.6.1 93397 1fecA 490 3.13e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1ht6A 405 3.19e+01 b.71.1.1,c.1.8.1 83629,83630 1z1yA 186 3.27e+01 1kk1A 410 3.49e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1am2 199 3.58e+01 1am2 b.86.1.2 28381 1kapP 479 3.66e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1sefA 274 3.75e+01 b.82.1.11 105452 2g8yA 385 3.80e+01 1dzkA 157 3.87e+01 1obpA b.60.1.1 27096 1vr3A 191 3.90e+01 2fikA 287 3.90e+01 1rkd 309 3.92e+01 1rkd c.72.1.1 34928 2arcA 164 4.06e+01 2arcA b.82.4.1 28148 1xe0A 114 4.10e+01 1r8oB 71 4.12e+01 1kv7A 488 4.17e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1ijbA 202 4.38e+01 c.62.1.1 71229 1pmy 123 4.38e+01 1bqk b.6.1.1 22888 1euvB 86 4.40e+01 1a5r d.15.1.1 37598 1i78A 297 4.53e+01 f.4.4.1 66046 1rkiA 102 4.54e+01 1thqA 170 4.64e+01 f.4.1.2 106920 1gutA 68 4.67e+01 b.40.6.1 65576 1m1hA 248 4.78e+01 b.114.1.1,d.58.42.1 78415,78416 1p4kA 295 5.01e+01 d.153.1.5 87772 1w66A 232 5.02e+01 1uvjA 664 5.06e+01 e.8.1.6 100045 1zchA 255 5.09e+01 1odmA 331 5.12e+01 b.82.2.1 86875 1olmA 403 5.15e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1o6lA 337 5.18e+01 d.144.1.7 81092 2aa4A 289 5.28e+01 5nul 138 5.34e+01 5nul c.23.5.1 31191 2f5yA 91 5.34e+01 1llfA 534 5.44e+01 c.69.1.17 78094 1k3yA 221 5.46e+01 a.45.1.1,c.47.1.5 77245,77246 1kutA 230 5.49e+01 d.143.1.1 73017 1ea7A 310 5.49e+01 c.41.1.1 70086 1l5aA 436 5.77e+01 c.43.1.2,c.43.1.2 75923,75924 2bkdN 134 5.82e+01 1avaC 181 5.84e+01 1avaC b.42.4.1 25604 1dmhA 311 5.84e+01 1dmhA b.3.6.1 22633 1k8kA 418 5.90e+01 c.55.1.1,c.55.1.1 68305,68306 1zm0A 114 5.90e+01 2bklA 695 6.05e+01 2f4nA 273 6.07e+01 1u9tA 354 6.07e+01 1l3iA 192 6.11e+01 c.66.1.22 77676 1zupA 315 6.19e+01 2ch9A 131 6.25e+01 2gokA 429 6.25e+01 1o7dE 126 6.28e+01 2asfA 137 6.49e+01 1odfA 290 6.55e+01 c.37.1.6 92782 1q7hA 153 6.62e+01 b.122.1.1,d.17.6.2 96042,96043 2c3gA 98 6.64e+01 1nykA 165 6.68e+01 b.33.1.1 86408 1apyB 141 6.70e+01 1apyB 2gaiA 633 6.87e+01 1u1tA 82 7.00e+01 1k8qA 377 7.05e+01 c.69.1.6 72177 1vjnA 220 7.08e+01 d.157.1.4 100825 1vkkA 154 7.11e+01 d.109.1.2 108669 1ejbA 168 7.15e+01 1rvv1 c.16.1.1 59417 1xy7A 166 7.15e+01 1ibyA 112 7.17e+01 1ibzA b.6.1.4 62233 2ew2A 316 7.19e+01 1tuhA 156 7.31e+01 d.17.4.11 107345 1ogoX 574 7.36e+01 b.133.1.1,b.80.1.10 92925,92926 1e4cP 215 7.43e+01 2fua c.74.1.1 34969 2fa8A 105 7.52e+01 1vq2A 193 7.68e+01 1u1sA 82 7.68e+01 1o5uA 101 7.71e+01 b.82.1.8 92518 1s4iA 175 7.74e+01 1vr9A 213 7.75e+01 1dciA 275 7.83e+01 1dciA c.14.1.3 30918 1b77A 228 7.86e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1sawA 225 7.87e+01 1b00A 127 7.91e+01 3chy c.23.1.1 31122 1nz0A 118 7.95e+01 d.14.1.2 86433 1z85A 234 7.97e+01 1nf3A 195 8.03e+01 c.37.1.8 85594 1nriA 306 8.04e+01 c.80.1.3 86123 2cxaA 256 8.09e+01 1r0vA 305 8.11e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2awfA 172 8.14e+01 2fz0A 149 8.17e+01 1f60A 458 8.18e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1q6hA 224 8.21e+01 d.26.1.1 95975 1vjkA 98 8.25e+01 d.15.3.1 108631 1fehA 574 8.26e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 4tsvA 150 8.39e+01 2tnfA b.22.1.1 23860 1xdnA 277 8.46e+01 1z9hA 290 8.61e+01 2bolA 314 8.68e+01 2gs5A 198 8.70e+01 1njrA 284 8.73e+01 c.50.1.2 103858 1jv1A 505 8.74e+01 c.68.1.5 71892 1ro5A 201 8.79e+01 d.108.1.3 105023 2fo3A 125 8.80e+01 1vi2A 300 8.91e+01 c.2.1.7,c.58.1.5 100726,100727