# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c9oA 66 7.51e-01 1mjc b.40.4.5 25325 1kqqA 139 1.75e+00 a.4.3.1 72885 1l6pA 125 2.94e+00 b.1.17.1 73626 2d9rA 104 2.99e+00 1ts9A 102 3.37e+00 1nykA 165 3.49e+00 b.33.1.1 86408 1yyaA 250 3.53e+00 1ig0A 319 4.04e+00 1ig0A b.82.6.1,c.100.1.1 62354,62355 1y14B 171 4.63e+00 2fwkA 121 4.78e+00 1zghA 260 4.98e+00 2g9zA 348 5.58e+00 1s5aA 150 6.97e+00 d.17.4.10 98525 2h6lA 146 7.03e+00 1q4rA 112 8.06e+00 d.58.4.4 95823 1em8B 112 8.11e+00 c.126.1.1 90458 1pmy 123 8.68e+00 1bqk b.6.1.1 22888 1xneA 113 8.85e+00 1vj0A 380 9.05e+00 b.35.1.2,c.2.1.1 100786,100787 1dhn 121 9.18e+00 1dhn d.96.1.3 40663 1v54B 227 9.75e+00 b.6.1.2,f.17.2.1 100322,100323 2fb7A 95 1.06e+01 2c78A 405 1.11e+01 1pl8A 356 1.11e+01 b.35.1.2,c.2.1.1 94878,94879 1vjkA 98 1.15e+01 d.15.3.1 108631 1yueA 427 1.17e+01 1g0oA 283 1.23e+01 1ybvA c.2.1.2 60181 1wqaA 455 1.27e+01 1qqrA 138 1.27e+01 1bmlC d.15.5.1 37721 1pszA 303 1.39e+01 1toaA c.92.2.2 35600 1cb0A 283 1.43e+01 1cb0A c.56.2.1 33790 1sacA 204 1.53e+01 1sacA b.29.1.5 24237 1khoA 370 1.54e+01 a.124.1.1,b.12.1.3 72489,72490 1o9rA 162 1.54e+01 a.25.1.1 86706 1w6uA 302 1.54e+01 1yzsA 121 1.58e+01 1xe0A 114 1.63e+01 1fsgA 233 1.67e+01 1qk3A c.61.1.1 34029 1bf6A 291 1.67e+01 1pscA c.1.9.3 29065 2f1kA 279 1.67e+01 1xw3A 110 1.82e+01 1zx8A 136 1.82e+01 1b00A 127 1.92e+01 3chy c.23.1.1 31122 1u04A 771 1.96e+01 b.34.14.1,c.55.3.10 107539,107540 1pdkB 157 2.00e+01 1pdkB b.2.3.2 22427 1ugxA 133 2.06e+01 1vybA 238 2.12e+01 d.151.1.1 108897 1fm4A 159 2.17e+01 1bv1 d.129.3.1 76186 1ccwA 137 2.18e+01 1be1 c.23.6.1 31238 1d0qA 103 2.27e+01 1d0qA g.41.3.2 45208 1zeqX 84 2.29e+01 1v5iB 76 2.31e+01 1ev7A 317 2.36e+01 1ev7B c.52.1.9 33315 1paz 123 2.37e+01 1bqk b.6.1.1 22878 1t3yA 141 2.38e+01 1kg0C 136 2.39e+01 d.169.1.1 72445 1fdr 248 2.41e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1vehA 92 2.51e+01 1q15A 503 2.54e+01 c.26.2.1,d.153.1.1 95538,95539 1bqk 124 2.56e+01 1bqk b.6.1.1 22889 2gu2A 312 2.59e+01 1k0hA 117 2.73e+01 b.106.1.2 71975 1v9kA 228 2.79e+01 d.265.1.3 108449 1yn9A 169 2.80e+01 1ux6A 350 2.80e+01 b.29.1.16,g.75.1.1 100145,100146 2g6fX 59 2.81e+01 1j1lA 290 3.18e+01 b.82.1.12 90766 2cwpA 112 3.32e+01 1xxqA 161 3.33e+01 1fl0A 171 3.33e+01 1eujA b.40.4.4 25315 2aifA 135 3.37e+01 2mhr 118 3.53e+01 2mhr a.24.4.1 16581 1nkqA 259 3.54e+01 d.177.1.1 103862 1f3uB 171 3.56e+01 1f3uB b.65.1.1 27525 2ddfA 257 3.64e+01 1wcv1 257 3.76e+01 1tc1A 220 3.81e+01 1tc1A c.61.1.1 34083 1zx5A 300 3.86e+01 1i0lA 221 3.88e+01 c.61.1.1 71096 2dh4A 340 4.03e+01 1gtzA 156 4.06e+01 c.23.13.1 70539 1jmxA 494 4.09e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1kngA 156 4.12e+01 c.47.1.10 72777 1quuA 250 4.12e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1wsrA 375 4.16e+01 1v7lA 163 4.22e+01 2f9hA 129 4.34e+01 1yavA 159 4.46e+01 1widA 130 4.51e+01 1xubA 298 4.53e+01 1z7gA 217 4.64e+01 1zlmA 58 4.66e+01 1iktA 120 4.68e+01 d.106.1.1 66188 2cu3A 64 4.82e+01 1wi5A 119 4.95e+01 1xzpB 150 5.00e+01 1k8qA 377 5.04e+01 c.69.1.6 72177 1m6jA 261 5.04e+01 c.1.1.1 78693 5nul 138 5.39e+01 5nul c.23.5.1 31191 1fr3A 67 5.47e+01 1fr3A b.40.6.1 25436 1ixh 321 5.51e+01 1ixh c.94.1.1 35761 1tzpA 255 5.53e+01 d.65.1.3 107520 1cjaA 342 5.67e+01 1cjaA d.144.1.3 41708 2b6nA 278 5.71e+01 1iukA 140 5.74e+01 c.2.1.8 83712 2f9dP 43 5.75e+01 1a62 130 5.86e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1o6aA 96 5.90e+01 b.139.1.1 92562 1yzfA 195 5.90e+01 1vjnA 220 6.12e+01 d.157.1.4 100825 2fcfA 103 6.15e+01 1g6xA 58 6.15e+01 1bpi g.8.1.1 60320 1o5xA 248 6.27e+01 c.1.1.1 92528 1gakA 141 6.27e+01 1gakA a.19.1.1 16415 1vc3B 97 6.30e+01 1v1dA 31 6.39e+01 1nofA 383 6.46e+01 b.71.1.2,c.1.8.3 92020,92021 2ftxA 90 6.54e+01 2a5zA 262 6.58e+01 1vb5A 276 6.59e+01 2ajtA 500 6.64e+01 1vkwA 218 6.64e+01 d.90.1.2 108695 1whmA 92 6.64e+01 1nz6A 101 6.73e+01 a.2.3.1 86441 1qhtA 775 6.91e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1o5uA 101 6.96e+01 b.82.1.8 92518 2h0uA 217 6.97e+01 1jtgB 165 7.04e+01 d.98.1.1 67267 1wzoA 246 7.09e+01 1p90A 145 7.13e+01 c.55.5.2 94377 2b5rC 165 7.23e+01 1uz5A 402 7.25e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1y9qA 192 7.38e+01 1l3iA 192 7.46e+01 c.66.1.22 77676 1ig3A 263 7.59e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1vizA 240 7.64e+01 c.1.4.1 100784 1wloA 136 7.78e+01 1ocyA 198 7.83e+01 d.231.1.1 86817 2g2uB 165 7.85e+01 1w0hA 204 7.86e+01 1f4pA 147 7.89e+01 5nul c.23.5.1 59651 1g2bA 62 8.01e+01 1tud b.34.2.1 24488 1mgqA 83 8.13e+01 b.38.1.1 79099 1wf7A 103 8.14e+01 1dqeA 137 8.23e+01 1dqeA a.39.2.1 17388 2h3lA 103 8.26e+01 2f5xA 312 8.32e+01 1mfgA 95 8.39e+01 b.36.1.1 79043 1z6bA 154 8.42e+01 2gfoA 396 8.52e+01 1jihA 531 8.54e+01 d.240.1.1,e.8.1.7 90374,90375 1mxmA 254 8.58e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 8abp 306 8.63e+01 8abp c.93.1.1 35647 1s3rA 535 8.64e+01 2fbwB 252 8.65e+01 1p5dX 463 8.70e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1v1hA 103 8.79e+01 b.83.1.1,h.1.17.1 108243,108244 1odfA 290 8.84e+01 c.37.1.6 92782 2h88B 252 8.90e+01 1wfeA 86 8.91e+01 1zud2 66 8.92e+01 1qzgA 187 9.00e+01 b.40.4.3 96643 2a08A 60 9.00e+01