# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v54B 227 2.04e-01 b.6.1.2,f.17.2.1 100322,100323 1dhn 121 2.96e-01 1dhn d.96.1.3 40663 1hl9A 449 4.83e-01 b.71.1.3,c.1.8.11 90650,90651 1qzgA 187 5.55e-01 b.40.4.3 96643 1z7gA 217 7.68e-01 2d9rA 104 8.88e-01 1khoA 370 1.02e+00 a.124.1.1,b.12.1.3 72489,72490 1xxqA 161 1.22e+00 1y14B 171 1.25e+00 1yavA 159 1.31e+00 1u0mA 382 1.66e+00 c.95.1.2,c.95.1.2 107557,107558 4ubpC 570 1.91e+00 1ubpC b.92.1.1,c.1.9.2 28431,29053 1ugxA 133 1.92e+00 1ts9A 102 2.03e+00 2h6lA 146 2.13e+00 1kqqA 139 2.28e+00 a.4.3.1 72885 1fr3A 67 2.30e+00 1fr3A b.40.6.1 25436 1bia 321 2.42e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1c9oA 66 2.67e+00 1mjc b.40.4.5 25325 2a5zA 262 2.69e+00 1xe0A 114 3.26e+00 2fwkA 121 3.46e+00 2bs3A 656 4.12e+00 2basA 431 4.21e+00 1l6pA 125 4.39e+00 b.1.17.1 73626 1qd6C 240 4.43e+00 1qd5A 2gzvA 114 4.73e+00 1wqaA 455 4.74e+00 1tc1A 220 4.85e+00 1tc1A c.61.1.1 34083 1jmxA 494 5.29e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1vj0A 380 5.31e+00 b.35.1.2,c.2.1.1 100786,100787 1x74A 360 5.74e+00 2fb7A 95 6.17e+00 2aj6A 159 6.89e+00 1z1yA 186 7.13e+00 2gu2A 312 7.50e+00 1fsgA 233 8.20e+00 1qk3A c.61.1.1 34029 1eajA 126 9.27e+00 1f5wA b.1.1.1 59401 2cqsA 842 1.08e+01 1ihjA 98 1.08e+01 1pdr b.36.1.1 62382 1e3dB 542 1.10e+01 1h2rL e.18.1.1 59189 1zd7A 159 1.21e+01 1unqA 125 1.21e+01 b.55.1.1 107968 1dciA 275 1.23e+01 1dciA c.14.1.3 30918 1l2mA 118 1.25e+01 d.89.1.4 77657 1yfuA 174 1.31e+01 1s5aA 150 1.38e+01 d.17.4.10 98525 1fdr 248 1.42e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1i6pA 220 1.44e+01 1ddzA c.53.2.1 61848 1llfA 534 1.44e+01 c.69.1.17 78094 1kngA 156 1.60e+01 c.47.1.10 72777 1dl2A 511 1.63e+01 1dl2A a.102.2.1 18844 1o7nB 194 1.63e+01 d.17.4.4 81164 1u4nA 310 1.77e+01 1vrbA 342 1.80e+01 1cbf 285 1.87e+01 1cbf c.90.1.1 35587 1wsrA 375 1.90e+01 1vybA 238 2.16e+01 d.151.1.1 108897 1ud9A 245 2.16e+01 d.131.1.2,d.131.1.2 107768,107769 1kwiA 101 2.16e+01 d.17.1.3 77564 1vkkA 154 2.34e+01 d.109.1.2 108669 2ew0A 192 2.39e+01 1mfgA 95 2.45e+01 b.36.1.1 79043 2h3lA 103 2.47e+01 1kv7A 488 2.65e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1sefA 274 2.66e+01 b.82.1.11 105452 1dmhA 311 2.78e+01 1dmhA b.3.6.1 22633 1uwzA 136 2.82e+01 c.97.1.1 108081 1fthA 122 2.87e+01 d.150.1.2 60028 2fcfA 103 2.92e+01 1qwrA 319 2.92e+01 b.82.1.3 96491 1i0lA 221 2.97e+01 c.61.1.1 71096 1sk4A 163 2.97e+01 d.118.1.1 105664 1gutA 68 3.04e+01 b.40.6.1 65576 1mgqA 83 3.06e+01 b.38.1.1 79099 2c78A 405 3.07e+01 1d3bB 91 3.13e+01 1d3bB b.38.1.1 24804 1j5wA 298 3.22e+01 d.104.1.1 71589 1njrA 284 3.48e+01 c.50.1.2 103858 1xffA 240 3.51e+01 d.153.1.1 109580 1tzpA 255 3.53e+01 d.65.1.3 107520 1ofdA 1520 3.59e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2f5yA 91 3.59e+01 1v9nA 360 3.63e+01 2arcA 164 3.75e+01 2arcA b.82.4.1 28148 2ew2A 316 3.86e+01 1hw5A 210 3.98e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1r5yA 386 3.99e+01 c.1.20.1 97134 1a62 130 4.04e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1l5aA 436 4.08e+01 c.43.1.2,c.43.1.2 75923,75924 2cwpA 112 4.12e+01 1ux6A 350 4.15e+01 b.29.1.16,g.75.1.1 100145,100146 2fdiA 211 4.33e+01 2a4dA 160 4.36e+01 1bouB 302 4.38e+01 1bouB c.56.6.1 33859 1k8qA 377 4.41e+01 c.69.1.6 72177 2bjfA 329 4.46e+01 1ea7A 310 4.53e+01 c.41.1.1 70086 1xw3A 110 4.69e+01 1vixA 420 4.77e+01 c.56.5.4,d.58.19.1 100777,100778 1zkdA 387 4.81e+01 1o0xA 262 4.85e+01 d.127.1.1 80755 1b00A 127 4.93e+01 3chy c.23.1.1 31122 1ykjA 394 5.06e+01 1vphA 149 5.08e+01 1pueE 89 5.09e+01 1awcA a.4.5.21 16165 2f9nA 245 5.13e+01 1thqA 170 5.15e+01 f.4.1.2 106920 1r0vA 305 5.15e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1zkoA 136 5.19e+01 1v9kA 228 5.27e+01 d.265.1.3 108449 1j6wA 175 5.29e+01 1j98A d.185.1.2 62663 1k0iA 394 5.39e+01 c.3.1.2,d.16.1.2 67942,67943 1iz5A 249 5.46e+01 d.131.1.2,d.131.1.2 83834,83835 1yzsA 121 5.48e+01 2f4nA 273 5.51e+01 1q6uA 245 5.56e+01 d.26.1.1 95998 2f2lX 167 5.56e+01 2c2xA 281 5.81e+01 1smd 496 5.95e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1z85A 234 6.00e+01 1rkiA 102 6.15e+01 1ef8A 261 6.16e+01 1ef8A c.14.1.3 30921 2g9zA 348 6.17e+01 1b77A 228 6.21e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1avaC 181 6.24e+01 1avaC b.42.4.1 25604 2fqxA 318 6.34e+01 1o7dE 126 6.35e+01 1sxrA 183 6.44e+01 d.118.1.1 106101 1ijbA 202 6.47e+01 c.62.1.1 71229 1olmA 403 6.55e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1v1hA 103 6.77e+01 b.83.1.1,h.1.17.1 108243,108244 1oruA 195 6.81e+01 b.58.1.2 93464 1j1lA 290 6.87e+01 b.82.1.12 90766 1q6hA 224 6.87e+01 d.26.1.1 95975 2bkdN 134 6.94e+01 1ni4B 341 6.96e+01 c.36.1.7,c.48.1.2 85729,85730 1z4eA 153 7.03e+01 1yckA 175 7.10e+01 1o6lA 337 7.13e+01 d.144.1.7 81092 1dbhA 354 7.14e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1mpxA 615 7.18e+01 b.18.1.13,c.69.1.21 85041,85042 1fzqA 181 7.21e+01 1hurA c.37.1.8 32060 1v7pB 128 7.24e+01 d.169.1.1 108407 1l4dB 122 7.25e+01 d.15.5.1 77684 1jv1A 505 7.25e+01 c.68.1.5 71892 1uekA 275 7.31e+01 d.14.1.5,d.58.26.5 88483,88484 1zghA 260 7.36e+01 1kutA 230 7.51e+01 d.143.1.1 73017 1xnzA 264 7.59e+01 2aa4A 289 7.67e+01 1zybA 232 7.68e+01 1l3iA 192 7.73e+01 c.66.1.22 77676 1yb3A 175 7.85e+01 1wzoA 246 7.87e+01 2fa8A 105 7.90e+01 1vmfA 145 7.95e+01 8abp 306 8.08e+01 8abp c.93.1.1 35647 1vjnA 220 8.21e+01 d.157.1.4 100825 2bszA 278 8.25e+01 5nul 138 8.25e+01 5nul c.23.5.1 31191 1vk3A 615 8.47e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2dekA 265 8.49e+01 1faoA 126 8.49e+01 1faoA b.55.1.1 26974 1i24A 404 8.51e+01 c.2.1.2 83663 1m6jA 261 8.63e+01 c.1.1.1 78693 1h2kA 349 8.69e+01 b.82.2.6 76572