# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v54B 227 9.77e-02 b.6.1.2,f.17.2.1 100322,100323 1zkdA 387 1.46e-01 2basA 431 1.84e-01 1c9oA 66 2.06e-01 1mjc b.40.4.5 25325 1y14B 171 3.79e-01 1yavA 159 4.75e-01 1fr3A 67 5.82e-01 1fr3A b.40.6.1 25436 1dhn 121 5.85e-01 1dhn d.96.1.3 40663 1o6lA 337 6.83e-01 d.144.1.7 81092 1ihjA 98 8.14e-01 1pdr b.36.1.1 62382 1z7gA 217 8.21e-01 4ubpC 570 1.06e+00 1ubpC b.92.1.1,c.1.9.2 28431,29053 1j5wA 298 1.16e+00 d.104.1.1 71589 2cwpA 112 1.27e+00 1xxqA 161 1.38e+00 2fwkA 121 1.46e+00 2d9rA 104 1.48e+00 1ugxA 133 1.59e+00 1k0iA 394 1.77e+00 c.3.1.2,d.16.1.2 67942,67943 1ofdA 1520 1.82e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1bia 321 1.82e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1tc1A 220 1.86e+00 1tc1A c.61.1.1 34083 1ykjA 394 1.90e+00 1ts9A 102 1.97e+00 1u0mA 382 2.01e+00 c.95.1.2,c.95.1.2 107557,107558 1zx8A 136 2.45e+00 1kqqA 139 2.67e+00 a.4.3.1 72885 2h6lA 146 2.69e+00 1zybA 232 2.74e+00 1cbf 285 2.82e+00 1cbf c.90.1.1 35587 2a5zA 262 2.88e+00 1fthA 122 3.10e+00 d.150.1.2 60028 1q6hA 224 3.35e+00 d.26.1.1 95975 1vj0A 380 3.42e+00 b.35.1.2,c.2.1.1 100786,100787 1fehA 574 3.86e+00 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1g2iA 166 4.06e+00 1g2iA c.23.16.2 31438 1kzlA 208 4.16e+00 b.43.4.3,b.43.4.3 77635,77636 1khoA 370 4.35e+00 a.124.1.1,b.12.1.3 72489,72490 1qd6C 240 4.53e+00 1qd5A 1l6pA 125 4.93e+00 b.1.17.1 73626 2gzvA 114 4.96e+00 8abp 306 5.12e+00 8abp c.93.1.1 35647 2aj6A 159 5.38e+00 1p4kA 295 5.46e+00 d.153.1.5 87772 2c78A 405 5.51e+00 2gu2A 312 5.63e+00 2arcA 164 5.69e+00 2arcA b.82.4.1 28148 1am2 199 5.78e+00 1am2 b.86.1.2 28381 1yphE 97 6.01e+00 1cjwA 166 6.82e+00 1cjwA d.108.1.1 40818 1llfA 534 6.87e+00 c.69.1.17 78094 1k3yA 221 7.44e+00 a.45.1.1,c.47.1.5 77245,77246 1yfuA 174 7.97e+00 1unqA 125 8.65e+00 b.55.1.1 107968 1i6pA 220 8.73e+00 1ddzA c.53.2.1 61848 2cu3A 64 8.85e+00 2bs3A 656 8.94e+00 1i0lA 221 8.98e+00 c.61.1.1 71096 1v9kA 228 9.39e+00 d.265.1.3 108449 1h2kA 349 9.71e+00 b.82.2.6 76572 2fb7A 95 9.82e+00 1vjkA 98 9.82e+00 d.15.3.1 108631 1dl2A 511 9.86e+00 1dl2A a.102.2.1 18844 1m6kA 251 9.91e+00 e.3.1.1 78695 2fdiA 211 1.04e+01 2bw8A 227 1.09e+01 1s4iA 175 1.14e+01 1z1yA 186 1.16e+01 1ejbA 168 1.20e+01 1rvv1 c.16.1.1 59417 1vc3B 97 1.20e+01 1nykA 165 1.28e+01 b.33.1.1 86408 1dciA 275 1.28e+01 1dciA c.14.1.3 30918 1l1qA 186 1.29e+01 c.61.1.1 77653 1xjvA 294 1.33e+01 1nofA 383 1.34e+01 b.71.1.2,c.1.8.3 92020,92021 1sefA 274 1.36e+01 b.82.1.11 105452 2fcfA 103 1.37e+01 1r17A 343 1.37e+01 b.2.3.4,b.2.3.4 96796,96797 1gutA 68 1.40e+01 b.40.6.1 65576 1fdr 248 1.43e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1v9nA 360 1.44e+01 1uwzA 136 1.45e+01 c.97.1.1 108081 1qwrA 319 1.48e+01 b.82.1.3 96491 2g8yA 385 1.53e+01 1ht6A 405 1.56e+01 b.71.1.1,c.1.8.1 83629,83630 1vlrA 350 1.57e+01 d.13.1.3,d.246.1.1 108860,108861 1d3bB 91 1.62e+01 1d3bB b.38.1.1 24804 1mfgA 95 1.66e+01 b.36.1.1 79043 1b8aA 438 1.67e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1xffA 240 1.77e+01 d.153.1.1 109580 1zd7A 159 1.77e+01 1sk4A 163 1.80e+01 d.118.1.1 105664 1xnzA 264 1.83e+01 1oa4A 222 1.84e+01 b.29.1.11 86731 1kwiA 101 1.85e+01 d.17.1.3 77564 2h3lA 103 1.86e+01 1z90A 469 1.87e+01 1a62 130 1.93e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1k7iA 479 1.95e+01 b.80.7.1,d.92.1.6 77281,77282 1rkiA 102 1.97e+01 1adt 356 1.97e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1xneA 113 1.98e+01 1jmxA 494 2.00e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1wqaA 455 2.01e+01 1yloA 348 2.02e+01 1e4cP 215 2.03e+01 2fua c.74.1.1 34969 1b00A 127 2.03e+01 3chy c.23.1.1 31122 1cl1A 395 2.05e+01 1cl2A c.67.1.3 34395 1cliA 345 2.07e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1pueE 89 2.08e+01 1awcA a.4.5.21 16165 1h8eA 510 2.10e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1wsrA 375 2.10e+01 1sxrA 183 2.15e+01 d.118.1.1 106101 1m2dA 110 2.15e+01 c.47.1.11 78476 2bi7A 384 2.21e+01 1q6uA 245 2.23e+01 d.26.1.1 95998 1qzgA 187 2.23e+01 b.40.4.3 96643 1hl9A 449 2.23e+01 b.71.1.3,c.1.8.11 90650,90651 1smd 496 2.25e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1olmA 403 2.33e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1yrrA 382 2.36e+01 2cqsA 842 2.51e+01 1wzoA 246 2.52e+01 1iz5A 249 2.55e+01 d.131.1.2,d.131.1.2 83834,83835 1fsgA 233 2.60e+01 1qk3A c.61.1.1 34029 1pl8A 356 2.61e+01 b.35.1.2,c.2.1.1 94878,94879 1nriA 306 2.62e+01 c.80.1.3 86123 2ew2A 316 2.62e+01 1vr9A 213 2.64e+01 1lf6A 684 2.66e+01 a.102.1.5,b.30.5.5 77918,77919 1uekA 275 2.66e+01 d.14.1.5,d.58.26.5 88483,88484 1vi2A 300 2.69e+01 c.2.1.7,c.58.1.5 100726,100727 1rutX 188 2.76e+01 1a7tA 232 2.78e+01 1a7tA d.157.1.1 42041 1o7nB 194 2.82e+01 d.17.4.4 81164 1rkd 309 2.82e+01 1rkd c.72.1.1 34928 1zchA 255 2.83e+01 1k8qA 377 2.84e+01 c.69.1.6 72177 1vrbA 342 2.84e+01 1zud2 66 2.87e+01 1ois 223 2.89e+01 1a36A e.15.1.1 43267 1krhA 338 2.91e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1thqA 170 2.92e+01 f.4.1.2 106920 1vphA 149 2.98e+01 2f2lX 167 2.99e+01 1yb3A 175 3.05e+01 1vk4A 298 3.09e+01 c.72.1.1 100850 1ibyA 112 3.12e+01 1ibzA b.6.1.4 62233 2ck3A 510 3.18e+01 1ea7A 310 3.19e+01 c.41.1.1 70086 1ug6A 431 3.22e+01 c.1.8.4 88490 1edg 380 3.27e+01 1edg c.1.8.3 28807 1mvfD 82 3.33e+01 b.129.1.1 85143 1wocA 103 3.34e+01 1l2mA 118 3.34e+01 d.89.1.4 77657 1z4eA 153 3.45e+01 1vr0A 247 3.55e+01 1ogoX 574 3.56e+01 b.133.1.1,b.80.1.10 92925,92926 1wdiA 345 3.56e+01 1gj7B 253 3.60e+01 1njrA 284 3.61e+01 c.50.1.2 103858 1y8xB 98 3.75e+01 2gfgA 193 3.75e+01 1ijbA 202 3.88e+01 c.62.1.1 71229 1o5uA 101 3.94e+01 b.82.1.8 92518 1j1lA 290 3.97e+01 b.82.1.12 90766 2cs7A 55 4.05e+01 1xw3A 110 4.12e+01 1vmfA 145 4.15e+01 1mpxA 615 4.16e+01 b.18.1.13,c.69.1.21 85041,85042 2bg9A 370 4.18e+01 1zghA 260 4.21e+01 1e3dB 542 4.26e+01 1h2rL e.18.1.1 59189 1yckA 175 4.28e+01 1or0A 160 4.36e+01 d.153.1.2 93445 2dpmA 284 4.45e+01 2dpmA c.66.1.28 34246 1dbhA 354 4.51e+01 1awe a.87.1.1,b.55.1.1 18514,26967 4tsvA 150 4.53e+01 2tnfA b.22.1.1 23860 1yzsA 121 4.59e+01 1pk6A 133 4.86e+01 b.22.1.1 94801 2fikA 287 4.89e+01 1aop 497 4.99e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1kngA 156 5.01e+01 c.47.1.10 72777 1ekjA 221 5.07e+01 1ekjB c.53.2.1 33364 1u9tA 354 5.15e+01 1jpyA 137 5.16e+01 g.17.1.6 67065 1x74A 360 5.18e+01 1n0qA 93 5.19e+01 k.37.1.1 79754 1bdmA 327 5.24e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1vq2A 193 5.25e+01 2fn0A 437 5.31e+01 1ww8A 439 5.35e+01 1wp5A 323 5.37e+01 1u1sA 82 5.43e+01 5nul 138 5.46e+01 5nul c.23.5.1 31191 1z02A 446 5.47e+01 1h4vB 421 5.49e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1zn8A 180 5.52e+01 1bjt 793 5.56e+01 1bjt e.11.1.1 43249 2c3gA 98 5.57e+01 2g0cA 76 5.62e+01 1vkkA 154 5.69e+01 d.109.1.2 108669 1q7hA 153 5.72e+01 b.122.1.1,d.17.6.2 96042,96043 1z9hA 290 5.75e+01 2c2xA 281 5.77e+01 1v7pB 128 5.80e+01 d.169.1.1 108407 1zm0A 114 5.89e+01 1jv1A 505 5.89e+01 c.68.1.5 71892 2gokA 429 5.91e+01 2azeA 155 5.92e+01 1s98A 107 5.95e+01 b.124.1.1 105377 1pzxA 289 6.03e+01 c.119.1.1 95484 1l4dB 122 6.03e+01 d.15.5.1 77684 1u04A 771 6.12e+01 b.34.14.1,c.55.3.10 107539,107540 2fr5A 146 6.13e+01 1n1tA 641 6.15e+01 b.29.1.15,b.68.1.1 79821,79822 1l3iA 192 6.28e+01 c.66.1.22 77676 2gaiA 633 6.28e+01 1ecsA 126 6.31e+01 1ecsA d.32.1.2 59407 1rc6A 261 6.32e+01 b.82.1.11 97287 2cxaA 256 6.36e+01 2gr8A 99 6.41e+01 1zxxA 319 6.61e+01 1i24A 404 6.61e+01 c.2.1.2 83663 1uzkA 162 6.61e+01 1fzqA 181 6.63e+01 1hurA c.37.1.8 32060 1kk1A 410 6.65e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1jk4A 89 6.67e+01 b.9.1.1 77130 1pjhA 280 6.78e+01 c.14.1.3 94761 1vk3A 615 6.82e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2g9zA 348 6.89e+01 1csh 435 6.94e+01 1csh a.103.1.1 18880 1d8wA 426 7.02e+01 1de5A c.1.15.2 29394 1w6uA 302 7.04e+01 2fz0A 149 7.07e+01 2fb5A 205 7.09e+01 1npsA 88 7.15e+01 1prs b.11.1.1 23622 1fecA 490 7.17e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1zr6A 503 7.17e+01 1jnyA 435 7.24e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1l5aA 436 7.26e+01 c.43.1.2,c.43.1.2 75923,75924 1nf3A 195 7.38e+01 c.37.1.8 85594 2gs5A 198 7.41e+01 1vjnA 220 7.65e+01 d.157.1.4 100825 1a1x 108 7.65e+01 1a1x b.63.1.1 27514 1v10A 521 7.65e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1xhhA 91 7.67e+01 1ux6A 350 7.73e+01 b.29.1.16,g.75.1.1 100145,100146 1f60A 458 7.80e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1rw1A 114 7.86e+01 1xy7A 166 7.87e+01 1cb0A 283 7.91e+01 1cb0A c.56.2.1 33790 1zvtA 256 7.91e+01 1mzyA 333 7.93e+01 b.6.1.3,b.6.1.3 103848,103849 1avyA 74 7.97e+01 1avyB h.1.17.1 45656 1z85A 234 7.98e+01 1vr3A 191 8.09e+01 2fqxA 318 8.12e+01 1ri9A 102 8.18e+01 b.34.2.1 97506 1ca1 370 8.20e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1widA 130 8.20e+01 2bszA 278 8.25e+01 1k8kA 418 8.33e+01 c.55.1.1,c.55.1.1 68305,68306 1jhsA 188 8.40e+01 d.107.1.1 84172 1t23A 93 8.51e+01 1xtmA 175 8.53e+01 1jfuA 186 8.58e+01 c.47.1.10 62940 2c0hA 353 8.62e+01 1nscA 390 8.62e+01 2qwc b.68.1.1 27591 1knvA 293 8.63e+01 c.52.1.7 68707 2dgkA 452 8.66e+01 1s5aA 150 8.66e+01 d.17.4.10 98525 2czrA 226 8.72e+01 2f4nA 273 8.79e+01 1qmgA 524 8.88e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1dzkA 157 9.00e+01 1obpA b.60.1.1 27096