# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ts9A 102 6.73e-01 1xzpB 150 1.67e+00 1mgqA 83 2.65e+00 b.38.1.1 79099 1pdkB 157 2.69e+00 1pdkB b.2.3.2 22427 1kg0C 136 3.01e+00 d.169.1.1 72445 2h6lA 146 3.03e+00 1s5aA 150 3.08e+00 d.17.4.10 98525 1v5iB 76 3.91e+00 1s4cA 155 5.53e+00 2fwkA 121 5.58e+00 1zx5A 300 6.13e+00 1y14B 171 6.24e+00 1l6pA 125 6.67e+00 b.1.17.1 73626 2c78A 405 7.47e+00 1khoA 370 8.28e+00 a.124.1.1,b.12.1.3 72489,72490 1kqqA 139 9.43e+00 a.4.3.1 72885 2d9rA 104 1.06e+01 1uz5A 402 1.19e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ig0A 319 1.21e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1wi5A 119 1.22e+01 1dqeA 137 1.26e+01 1dqeA a.39.2.1 17388 1c9oA 66 1.34e+01 1mjc b.40.4.5 25325 1xw3A 110 1.54e+01 1yzsA 121 1.60e+01 2fb7A 95 1.62e+01 1xfrA 128 1.70e+01 1v1hA 103 1.77e+01 b.83.1.1,h.1.17.1 108243,108244 1iirA 415 1.85e+01 1iirA c.87.1.5 62453 1ibyA 112 1.85e+01 1ibzA b.6.1.4 62233 1dhn 121 1.86e+01 1dhn d.96.1.3 40663 1gtzA 156 1.96e+01 c.23.13.1 70539 1b00A 127 1.97e+01 3chy c.23.1.1 31122 1pszA 303 2.13e+01 1toaA c.92.2.2 35600 1em8B 112 2.13e+01 c.126.1.1 90458 1iktA 120 2.21e+01 d.106.1.1 66188 1x74A 360 2.25e+01 1g2cB 43 2.27e+01 1g2cB 2gaeA 346 2.29e+01 1po5A 476 2.44e+01 a.104.1.1 94963 1dbhA 354 2.61e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1x9bA 53 2.65e+01 1yz1A 174 2.84e+01 1x79B 112 2.89e+01 1ugxA 133 2.90e+01 1zghA 260 3.00e+01 1f3uB 171 3.01e+01 1f3uB b.65.1.1 27525 1v54B 227 3.04e+01 b.6.1.2,f.17.2.1 100322,100323 1ezeA 38 3.10e+01 1ezeA j.39.1.1 46302 1f32A 149 3.15e+01 1f32A d.62.1.1 39539 1q15A 503 3.18e+01 c.26.2.1,d.153.1.1 95538,95539 1t3yA 141 3.19e+01 1rh5B 74 3.23e+01 f.23.28.1 97465 2fcfA 103 3.41e+01 1m8aA 70 3.45e+01 d.9.1.1 74579 1p30A 952 3.50e+01 b.121.2.2,b.121.2.2 93964,93965 1sseB 86 3.68e+01 1vl5A 260 3.83e+01 c.66.1.41 108720 1bed 181 3.90e+01 1fvkA c.47.1.13 90330 2ae0X 345 4.15e+01 1ixh 321 4.29e+01 1ixh c.94.1.1 35761 1z9iA 53 4.40e+01 1dfuP 94 4.47e+01 1dfuP b.53.1.1 26936 2g9zA 348 4.71e+01 1jtgB 165 4.77e+01 d.98.1.1 67267 2g2uB 165 4.83e+01 1cxqA 162 4.83e+01 1cxqA c.55.3.2 33621 2hciA 69 4.88e+01 1s1hC 192 4.96e+01 i.1.1.1 105156 1nykA 165 5.03e+01 b.33.1.1 86408 1yvcA 70 5.08e+01 1kngA 156 5.15e+01 c.47.1.10 72777 1ccwA 137 5.16e+01 1be1 c.23.6.1 31238 1idrA 136 5.17e+01 1dlyA a.1.1.1 62301 2cwpA 112 5.26e+01 1tc1A 220 5.28e+01 1tc1A c.61.1.1 34083 1yueA 427 5.32e+01 1eajA 126 5.34e+01 1f5wA b.1.1.1 59401 1quuA 250 5.42e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1fm4A 159 5.47e+01 1bv1 d.129.3.1 76186 1yavA 159 5.88e+01 1wcv1 257 5.90e+01 2g6fX 59 5.95e+01 1qzgA 187 5.95e+01 b.40.4.3 96643 1inp 400 6.08e+01 1inp e.7.1.1 42972 2aw42 46 6.11e+01 1dmhA 311 6.19e+01 1dmhA b.3.6.1 22633 2b5rC 165 6.30e+01 1xxqA 161 6.35e+01 1jmxA 494 6.37e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2bhwA 232 6.54e+01 1fr3A 67 6.58e+01 1fr3A b.40.6.1 25436 1vybA 238 6.58e+01 d.151.1.1 108897 2aifA 135 6.63e+01 1qd6C 240 6.63e+01 1qd5A 1k8qA 377 6.64e+01 c.69.1.6 72177 1wf7A 103 6.75e+01 2h88B 252 6.76e+01 1l1lA 739 6.78e+01 c.7.1.4 73470 2bukA 196 6.85e+01 1d9cA 121 7.01e+01 1d9cA a.26.1.3 16901 1oktA 211 7.09e+01 a.45.1.1,c.47.1.5 93272,93273 2a50A 73 7.33e+01 1avaC 181 7.37e+01 1avaC b.42.4.1 25604 1cjaA 342 7.53e+01 1cjaA d.144.1.3 41708 1cb0A 283 7.66e+01 1cb0A c.56.2.1 33790 1xkpC 143 7.69e+01 1yfuA 174 7.70e+01 1g6xA 58 7.70e+01 1bpi g.8.1.1 60320 2fbwB 252 7.91e+01 2genA 197 7.94e+01 2aaxA 275 8.14e+01 2a2fX 325 8.23e+01 1unqA 125 8.40e+01 b.55.1.1 107968 1yv4A 104 8.72e+01 2cjaA 522 8.74e+01 1dzaA 129 8.75e+01 7rsa d.5.1.1 37275 2gu2A 312 8.77e+01 1mxmA 254 8.82e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2aawA 222 8.83e+01