# TARGET T0386 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0386.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.02279 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 L 0.008 0.007 0.024 0.380 0.123 0.459 2 L 0.007 0.004 0.008 0.658 0.061 0.262 3 K 0.001 0.001 0.006 0.963 0.012 0.018 4 E 0.002 0.001 0.006 0.976 0.010 0.006 5 F 0.002 0.001 0.006 0.980 0.007 0.004 6 M 0.003 0.001 0.007 0.978 0.006 0.005 7 H 0.002 0.001 0.007 0.976 0.008 0.006 8 T 0.002 0.001 0.012 0.952 0.016 0.017 9 M 0.004 0.004 0.022 0.894 0.044 0.032 10 K 0.006 0.003 0.032 0.814 0.111 0.033 11 N 0.007 0.002 0.034 0.682 0.205 0.071 12 T 0.004 0.003 0.021 0.572 0.251 0.149 13 G 0.014 0.006 0.010 0.033 0.384 0.553 14 R 0.048 0.020 0.012 0.017 0.239 0.665 15 N 0.209 0.038 0.027 0.013 0.337 0.376 16 V 0.325 0.037 0.071 0.014 0.363 0.190 17 N 0.309 0.019 0.045 0.008 0.384 0.235 18 D 0.263 0.010 0.047 0.008 0.465 0.206 19 R 0.471 0.005 0.009 0.005 0.235 0.274 20 P 0.769 0.003 0.004 0.004 0.068 0.151 21 V 0.935 0.004 0.002 0.004 0.019 0.036 22 M 0.975 0.002 0.001 0.003 0.005 0.014 23 V 0.968 0.003 0.001 0.004 0.007 0.018 24 A 0.914 0.004 0.001 0.004 0.042 0.035 25 K 0.611 0.004 0.005 0.005 0.293 0.083 26 E 0.250 0.006 0.009 0.009 0.587 0.138 27 G 0.173 0.012 0.008 0.007 0.586 0.213 28 E 0.478 0.012 0.004 0.002 0.135 0.369 29 T 0.842 0.017 0.002 0.002 0.034 0.102 30 Y 0.778 0.012 0.004 0.005 0.061 0.141 31 T 0.672 0.004 0.006 0.009 0.106 0.203 32 G 0.734 0.002 0.005 0.007 0.098 0.154 33 T 0.840 0.007 0.004 0.016 0.049 0.085 34 Y 0.834 0.014 0.003 0.018 0.053 0.078 35 R 0.651 0.015 0.005 0.025 0.122 0.181 36 G 0.396 0.009 0.021 0.023 0.253 0.298 37 A 0.302 0.015 0.064 0.029 0.312 0.279 38 G 0.325 0.033 0.061 0.022 0.335 0.223 39 L 0.285 0.012 0.057 0.021 0.423 0.202 40 E 0.355 0.006 0.028 0.015 0.351 0.246 41 G 0.774 0.004 0.015 0.013 0.110 0.083 42 F 0.926 0.004 0.004 0.009 0.027 0.030 43 A 0.974 0.001 0.001 0.005 0.008 0.011 44 L 0.977 0.002 0.001 0.004 0.004 0.013 45 N 0.945 0.003 0.001 0.002 0.017 0.032 46 V 0.815 0.007 0.002 0.002 0.127 0.047 47 K 0.496 0.005 0.005 0.002 0.387 0.105 48 G 0.284 0.003 0.009 0.002 0.592 0.109 49 A 0.662 0.007 0.004 0.001 0.213 0.112 50 Y 0.858 0.013 0.002 0.001 0.037 0.089 51 I 0.878 0.018 0.001 0.001 0.034 0.068 52 I 0.711 0.017 0.003 0.001 0.077 0.192 53 G 0.444 0.012 0.009 0.001 0.202 0.332 54 N 0.190 0.016 0.039 0.004 0.379 0.373 55 I 0.012 0.004 0.569 0.010 0.385 0.020 56 D 0.019 0.003 0.452 0.013 0.476 0.037 57 H 0.004 0.002 0.650 0.025 0.300 0.020 58 L 0.039 0.074 0.029 0.022 0.522 0.314 59 P 0.038 0.018 0.008 0.013 0.128 0.796 60 P 0.010 0.003 0.416 0.459 0.080 0.033 61 E 0.045 0.002 0.528 0.209 0.174 0.043 62 Q 0.071 0.005 0.614 0.160 0.117 0.033 63 L 0.414 0.029 0.108 0.148 0.142 0.159 64 K 0.498 0.021 0.044 0.141 0.122 0.174 65 I 0.571 0.025 0.026 0.072 0.106 0.200 66 L 0.412 0.093 0.007 0.015 0.109 0.364 67 K 0.181 0.028 0.016 0.010 0.691 0.075 68 P 0.087 0.004 0.013 0.004 0.840 0.052 69 G 0.021 0.002 0.013 0.002 0.918 0.043 70 D 0.354 0.030 0.005 0.001 0.533 0.076 71 K 0.772 0.026 0.002 0.001 0.047 0.151 72 I 0.913 0.010 0.001 0.001 0.026 0.049 73 T 0.910 0.008 0.002 0.001 0.017 0.062 74 F 0.693 0.014 0.002 0.002 0.040 0.248 75 T 0.228 0.005 0.002 0.002 0.107 0.657