# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c9oA 66 9.17e-01 1mjc b.40.4.5 25325 1kqqA 139 1.30e+00 a.4.3.1 72885 1vjtA 483 1.62e+00 c.2.1.5,d.162.1.2 100833,100834 1v3fA 120 2.07e+00 a.4.5.31 100289 1m2eA 135 2.50e+00 c.23.1.5 78478 1yyaA 250 3.58e+00 1l6pA 125 3.68e+00 b.1.17.1 73626 1ts9A 102 3.79e+00 1wjnA 97 4.16e+00 1vjrA 271 4.22e+00 c.108.1.14 100832 2fwkA 121 4.48e+00 1nykA 165 4.85e+00 b.33.1.1 86408 1y14B 171 5.91e+00 2d9rA 104 5.96e+00 1xg9A 260 6.07e+00 1zghA 260 6.18e+00 1dhn 121 6.47e+00 1dhn d.96.1.3 40663 1ig0A 319 7.25e+00 1ig0A b.82.6.1,c.100.1.1 62354,62355 1vjkA 98 7.95e+00 d.15.3.1 108631 1xneA 113 8.69e+00 1kg0C 136 8.97e+00 d.169.1.1 72445 1yezA 68 8.98e+00 2g9zA 348 9.31e+00 1fsgA 233 9.64e+00 1qk3A c.61.1.1 34029 1pmy 123 1.03e+01 1bqk b.6.1.1 22888 1exmA 405 1.04e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1vj0A 380 1.14e+01 b.35.1.2,c.2.1.1 100786,100787 1em8B 112 1.14e+01 c.126.1.1 90458 1wqaA 455 1.14e+01 1yn9A 169 1.21e+01 1f56A 91 1.24e+01 2cbp b.6.1.1 22896 1u04A 771 1.30e+01 b.34.14.1,c.55.3.10 107539,107540 1o9rA 162 1.31e+01 a.25.1.1 86706 1vybA 238 1.59e+01 d.151.1.1 108897 2c78A 405 1.61e+01 1ha3A 405 1.63e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 2b30A 301 1.63e+01 1b1cA 181 1.64e+01 1amoA c.23.5.2 31212 1q4rA 112 1.67e+01 d.58.4.4 95823 2h6lA 146 1.68e+01 1yueA 427 1.70e+01 1bf6A 291 1.71e+01 1pscA c.1.9.3 29065 1cb0A 283 1.73e+01 1cb0A c.56.2.1 33790 2fb7A 95 1.90e+01 1pl8A 356 2.02e+01 b.35.1.2,c.2.1.1 94878,94879 1ev7A 317 2.03e+01 1ev7B c.52.1.9 33315 1qqrA 138 2.06e+01 1bmlC d.15.5.1 37721 1xw3A 110 2.13e+01 1g0oA 283 2.16e+01 1ybvA c.2.1.2 60181 1cjbA 231 2.16e+01 1qk3A c.61.1.1 34079 1sacA 204 2.17e+01 1sacA b.29.1.5 24237 1yo8A 634 2.20e+01 1yzfA 195 2.25e+01 1zq1A 438 2.29e+01 1s5aA 150 2.31e+01 d.17.4.10 98525 1b00A 127 2.41e+01 3chy c.23.1.1 31122 1t3yA 141 2.52e+01 1cyw 205 2.52e+01 1cyx b.6.1.2 23024 1m26A 133 2.55e+01 1fdr 248 2.57e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1xw4X 110 2.58e+01 1zx8A 136 2.60e+01 1yzsA 121 2.63e+01 1xpiA 231 2.64e+01 1paz 123 2.64e+01 1bqk b.6.1.1 22878 1t2lA 141 2.66e+01 1zesA 125 2.81e+01 1ujxA 119 2.84e+01 b.26.1.2 99473 1v54B 227 2.87e+01 b.6.1.2,f.17.2.1 100322,100323 1vfqA 143 2.90e+01 2f1kA 279 2.95e+01 1bqk 124 3.00e+01 1bqk b.6.1.1 22889 1j1lA 290 3.06e+01 b.82.1.12 90766 1v9kA 228 3.14e+01 d.265.1.3 108449 1xe0A 114 3.16e+01 1w6uA 302 3.16e+01 1yl31 118 3.19e+01 1pszA 303 3.24e+01 1toaA c.92.2.2 35600 1ux6A 350 3.33e+01 b.29.1.16,g.75.1.1 100145,100146 1khoA 370 3.35e+01 a.124.1.1,b.12.1.3 72489,72490 1v5iB 76 3.38e+01 1zeqX 84 3.40e+01 1zx5A 300 3.40e+01 1e3jA 352 3.41e+01 1e3jA b.35.1.2,c.2.1.1 24765,29781 1k0hA 117 3.41e+01 b.106.1.2 71975 1ass 159 3.43e+01 1a6dA c.8.5.2 30818 1gtzA 156 3.51e+01 c.23.13.1 70539 1fftB 315 3.58e+01 1cyx b.6.1.2,f.17.2.1 23025,43628 2g6fX 59 3.59e+01 1tzpA 255 3.65e+01 d.65.1.3 107520 2aifA 135 3.68e+01 1pdkB 157 3.68e+01 1pdkB b.2.3.2 22427 1iktA 120 3.69e+01 d.106.1.1 66188 1o6uA 403 3.72e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 2mhr 118 3.75e+01 2mhr a.24.4.1 16581 2cwpA 112 3.88e+01 1bkcE 256 3.90e+01 1bkcA d.92.1.10 40333 1q15A 503 3.91e+01 c.26.2.1,d.153.1.1 95538,95539 1rxxA 421 3.96e+01 d.126.1.4 98061 2gu2A 312 4.07e+01 1bkcI 256 4.09e+01 1bkcA d.92.1.10 40334 1e0gA 48 4.20e+01 1e01A d.7.1.1 37325 1d0iA 156 4.27e+01 2dhqA c.23.13.1 31383 2dh4A 340 4.29e+01 1ccwA 137 4.35e+01 1be1 c.23.6.1 31238 1ugxA 133 4.36e+01 1nkqA 259 4.41e+01 d.177.1.1 103862 1zxcA 263 4.42e+01 1widA 130 4.44e+01 1f3uB 171 4.44e+01 1f3uB b.65.1.1 27525 1fo1A 271 4.49e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 5nul 138 4.61e+01 5nul c.23.5.1 31191 2fcfA 103 4.63e+01 1fl0A 171 4.65e+01 1eujA b.40.4.4 25315 1lyxA 248 4.79e+01 c.1.1.1 78304 1odfA 290 4.88e+01 c.37.1.6 92782 1udmA 149 5.04e+01 d.109.1.2 107780 1o6aA 96 5.07e+01 b.139.1.1 92562 1v7lA 163 5.08e+01 1yjmA 110 5.09e+01 1j7qA 86 5.16e+01 1j7rA a.39.1.5 62700 2f9hA 129 5.18e+01 1wf7A 103 5.19e+01 1wcv1 257 5.24e+01 1gyzA 60 5.24e+01 a.144.2.1 70793 1d0qA 103 5.29e+01 1d0qA g.41.3.2 45208 1wi5A 119 5.36e+01 1qqcA 773 5.41e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 2b6nA 278 5.45e+01 2affA 120 5.49e+01 1wsrA 375 5.52e+01 1l3iA 192 5.55e+01 c.66.1.22 77676 2ddfA 257 5.60e+01 1k8tA 510 5.66e+01 e.41.1.1 68316 1yavA 159 5.67e+01 1xxqA 161 5.81e+01 1vkwA 218 5.96e+01 d.90.1.2 108695 1z7gA 217 5.97e+01 1jtgB 165 5.98e+01 d.98.1.1 67267 1vehA 92 6.02e+01 2ak5A 64 6.05e+01 1o5xA 248 6.06e+01 c.1.1.1 92528 1u1wA 298 6.07e+01 2g2uB 165 6.28e+01 1zlmA 58 6.29e+01 1vjnA 220 6.38e+01 d.157.1.4 100825 1tgxA 60 6.40e+01 1tgxA g.7.1.1 44398 1avaA 403 6.48e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 2b5rC 165 6.61e+01 1fr3A 67 6.62e+01 1fr3A b.40.6.1 25436 1gz6A 319 6.63e+01 c.2.1.2 76410 1gakA 141 6.66e+01 1gakA a.19.1.1 16415 1whmA 92 6.69e+01 1z0wA 207 6.90e+01 1fm4A 159 6.92e+01 1bv1 d.129.3.1 76186 1bzyA 217 6.94e+01 1qk3A c.61.1.1 34071 2aw4Q 117 7.10e+01 1ni4B 341 7.10e+01 c.36.1.7,c.48.1.2 85729,85730 1f4pA 147 7.12e+01 5nul c.23.5.1 59651 1tc1A 220 7.12e+01 1tc1A c.61.1.1 34083 1nlbH 218 7.12e+01 b.1.1.1,b.1.1.2 80621,80622 2cu3A 64 7.22e+01 1i0lA 221 7.28e+01 c.61.1.1 71096 2h0uA 217 7.32e+01 1zp7A 206 7.38e+01 1xubA 298 7.40e+01 2ggcA 263 7.42e+01 1kngA 156 7.44e+01 c.47.1.10 72777 1p90A 145 7.54e+01 c.55.5.2 94377 1jopA 155 7.59e+01 b.82.2.7 84187 1nofA 383 7.60e+01 b.71.1.2,c.1.8.3 92020,92021 1m6jA 261 7.73e+01 c.1.1.1 78693 1w0hA 204 7.73e+01 1ml8A 134 7.79e+01 d.227.1.2 85013 1olmA 403 7.92e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 8abp 306 8.08e+01 8abp c.93.1.1 35647 2brfA 110 8.27e+01 1dbhA 354 8.34e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1aonO 97 8.34e+01 b.35.1.1 24642 1kz7A 353 8.42e+01 a.87.1.1,b.55.1.1 73333,73334 1quuA 250 8.61e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1iukA 140 8.66e+01 c.2.1.8 83712 1uz5A 402 8.73e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1b71A 191 8.82e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 1k8qA 377 8.82e+01 c.69.1.6 72177 1nz6A 101 8.86e+01 a.2.3.1 86441 1t6kA 278 8.93e+01 1amy 403 8.95e+01 1jdc b.71.1.1,c.1.8.1 27799,28786 1qhtA 775 8.96e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1ryt 190 8.97e+01 1ryt a.25.1.1,g.41.5.1 16646,45245