# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v54B 227 2.22e-01 b.6.1.2,f.17.2.1 100322,100323 1dhn 121 2.61e-01 1dhn d.96.1.3 40663 1zq1A 438 3.08e-01 1usuA 260 6.16e-01 d.14.1.8 99885 1qzgA 187 6.20e-01 b.40.4.3 96643 1hl9A 449 6.68e-01 b.71.1.3,c.1.8.11 90650,90651 2d9rA 104 8.79e-01 1khoA 370 1.07e+00 a.124.1.1,b.12.1.3 72489,72490 1z7gA 217 1.23e+00 1y14B 171 1.24e+00 1yavA 159 1.58e+00 1xxqA 161 1.59e+00 1m26A 133 1.79e+00 1u0mA 382 2.03e+00 c.95.1.2,c.95.1.2 107557,107558 1ts9A 102 2.09e+00 1fr3A 67 2.41e+00 1fr3A b.40.6.1 25436 2h6lA 146 2.62e+00 1c9oA 66 2.68e+00 1mjc b.40.4.5 25325 1ugxA 133 2.69e+00 1bia 321 2.82e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2a5zA 262 3.05e+00 4ubpC 570 3.19e+00 1ubpC b.92.1.1,c.1.9.2 28431,29053 1kqqA 139 3.20e+00 a.4.3.1 72885 2fwkA 121 3.74e+00 2basA 431 4.06e+00 2bs3A 656 4.20e+00 1wqaA 455 4.24e+00 1qlaA 656 4.36e+00 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 1wjnA 97 4.77e+00 2gzvA 114 5.09e+00 1jmxA 494 5.62e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1tc1A 220 5.69e+00 1tc1A c.61.1.1 34083 2fb7A 95 6.01e+00 1qd6C 240 6.01e+00 1qd5A 1l6pA 125 6.02e+00 b.1.17.1 73626 1xe0A 114 6.07e+00 1bzyA 217 6.32e+00 1qk3A c.61.1.1 34071 1qd5A 275 6.72e+00 1qd5A f.4.2.1 43748 1vj0A 380 6.93e+00 b.35.1.2,c.2.1.1 100786,100787 2aj6A 159 7.54e+00 1z1yA 186 9.53e+00 1x74A 360 9.58e+00 2gu2A 312 1.04e+01 2cqsA 842 1.07e+01 1uspA 139 1.13e+01 d.227.1.1 99879 1ihjA 98 1.15e+01 1pdr b.36.1.1 62382 1fsgA 233 1.22e+01 1qk3A c.61.1.1 34029 1l2mA 118 1.30e+01 d.89.1.4 77657 1cleA 534 1.32e+01 1thg c.69.1.17 34771 1llfA 534 1.32e+01 c.69.1.17 78094 1zd7A 159 1.39e+01 1yezA 68 1.42e+01 1e3dB 542 1.49e+01 1h2rL e.18.1.1 59189 1eajA 126 1.52e+01 1f5wA b.1.1.1 59401 1a8p 258 1.60e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1fdr 248 1.63e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1reoA 486 1.64e+01 c.3.1.2,d.16.1.5 97325,97326 1dciA 275 1.69e+01 1dciA c.14.1.3 30918 1h10A 125 1.69e+01 b.55.1.1 83446 1unqA 125 1.69e+01 b.55.1.1 107968 1u4nA 310 1.71e+01 1eg9B 194 1.80e+01 1ndoB d.17.4.4 38120 1s5aA 150 1.81e+01 d.17.4.10 98525 1vrbA 342 1.82e+01 1yfuA 174 1.83e+01 1i6pA 220 1.84e+01 1ddzA c.53.2.1 61848 1qqcA 773 2.05e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1dl2A 511 2.12e+01 1dl2A a.102.2.1 18844 1cbf 285 2.13e+01 1cbf c.90.1.1 35587 1kwiA 101 2.21e+01 d.17.1.3 77564 1zp7A 206 2.35e+01 1o7nB 194 2.44e+01 d.17.4.4 81164 1kngA 156 2.45e+01 c.47.1.10 72777 1wsrA 375 2.54e+01 1vkkA 154 2.62e+01 d.109.1.2 108669 1ospH 218 2.64e+01 1igtB b.1.1.1,b.1.1.2 20117,21147 1yo8A 634 2.66e+01 1sefA 274 2.83e+01 b.82.1.11 105452 1aszB 490 2.83e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1ha3A 405 2.84e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1exmA 405 2.89e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2ew0A 192 2.91e+01 1uwzA 136 3.26e+01 c.97.1.1 108081 1rznA 205 3.28e+01 1t3cA 421 3.31e+01 d.92.1.7 106343 1mm4A 170 3.32e+01 f.4.1.2 79294 1jtkA 136 3.33e+01 c.97.1.1 71862 1vybA 238 3.35e+01 d.151.1.1 108897 2h3lA 103 3.35e+01 1h0bA 256 3.39e+01 b.29.1.11 83422 2fcfA 103 3.41e+01 1mgqA 83 3.41e+01 b.38.1.1 79099 1fthA 122 3.42e+01 d.150.1.2 60028 1mfgA 95 3.42e+01 b.36.1.1 79043 1ud9A 245 3.42e+01 d.131.1.2,d.131.1.2 107768,107769 1v8gA 329 3.45e+01 a.46.2.1,c.27.1.1 100505,100506 1xffA 240 3.51e+01 d.153.1.1 109580 1gutA 68 3.55e+01 b.40.6.1 65576 1zesA 125 3.60e+01 2c78A 405 3.64e+01 1i0lA 221 3.93e+01 c.61.1.1 71096 1qwrA 319 4.04e+01 b.82.1.3 96491 1d3bB 91 4.07e+01 1d3bB b.38.1.1 24804 1a8vA 121 4.07e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1dfcA 493 4.09e+01 1dfcA b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1zkdA 387 4.12e+01 1i6xA 209 4.17e+01 a.4.5.4,b.82.3.2 83673,83674 1sk4A 163 4.21e+01 d.118.1.1 105664 1m2eA 135 4.23e+01 c.23.1.5 78478 1dm0A 287 4.30e+01 1dm0A d.165.1.2 42227 1j5wA 298 4.34e+01 d.104.1.1 71589 1a62 130 4.37e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1gyzA 60 4.44e+01 a.144.2.1 70793 1ltoA 245 4.45e+01 b.47.1.2 84707 1l5aA 436 4.47e+01 c.43.1.2,c.43.1.2 75923,75924 1njrA 284 4.47e+01 c.50.1.2 103858 1cjbA 231 4.53e+01 1qk3A c.61.1.1 34079 1vl6A 388 4.60e+01 c.2.1.7,c.58.1.3 108724,108725 1dmhA 311 4.61e+01 1dmhA b.3.6.1 22633 2cwpA 112 4.67e+01 2b30A 301 4.69e+01 1pxgA 382 4.71e+01 c.1.20.1 95287 1ux6A 350 4.76e+01 b.29.1.16,g.75.1.1 100145,100146 1o0xA 262 4.97e+01 d.127.1.1 80755 1tzpA 255 5.00e+01 d.65.1.3 107520 1r5yA 386 5.07e+01 c.1.20.1 97134 1smvA 260 5.13e+01 1smvA b.121.4.7 23288 1xwiA 322 5.15e+01 2f5yA 91 5.19e+01 2fdiA 211 5.20e+01 1ofdA 1520 5.29e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1g0hA 252 5.32e+01 1dk4A e.7.1.1 60171 2ew2A 316 5.36e+01 1v9nA 360 5.38e+01 1xw4X 110 5.46e+01 1vixA 420 5.47e+01 c.56.5.4,d.58.19.1 100777,100778 1fnsA 196 5.55e+01 1auq c.62.1.1 34136 1fzqA 181 5.62e+01 1hurA c.37.1.8 32060 1kv7A 488 5.63e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1iz5A 249 5.69e+01 d.131.1.2,d.131.1.2 83834,83835 1pueE 89 5.73e+01 1awcA a.4.5.21 16165 1q6uA 245 5.85e+01 d.26.1.1 95998 1k8qA 377 5.94e+01 c.69.1.6 72177 1vphA 149 6.05e+01 1xw3A 110 6.21e+01 1zkoA 136 6.23e+01 1gdoA 240 6.23e+01 1gdoA 2arcA 164 6.27e+01 2arcA b.82.4.1 28148 1r0vA 305 6.28e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1pud 386 6.34e+01 1pud c.1.20.1 29658 1ea7A 310 6.34e+01 c.41.1.1 70086 1j6wA 175 6.37e+01 1j98A d.185.1.2 62663 1zybA 232 6.38e+01 1ykjA 394 6.52e+01 2fqxA 318 6.54e+01 2bjfA 329 6.64e+01 1b00A 127 6.65e+01 3chy c.23.1.1 31122 1kskA 234 6.71e+01 d.66.1.5,d.265.1.3 72920,90389 1v7pB 128 6.83e+01 d.169.1.1 108407 1ukmB 128 7.00e+01 d.169.1.1 99500 2c2xA 281 7.09e+01 1yzsA 121 7.11e+01 1ef8A 261 7.16e+01 1ef8A c.14.1.3 30921 1k0iA 394 7.21e+01 c.3.1.2,d.16.1.2 67942,67943 1thqA 170 7.21e+01 f.4.1.2 106920 1bouB 302 7.24e+01 1bouB c.56.6.1 33859 1oruA 195 7.25e+01 b.58.1.2 93464 1olmA 403 7.30e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2f4nA 273 7.33e+01 1avaC 181 7.45e+01 1avaC b.42.4.1 25604 2fa8A 105 7.45e+01 1jv1A 505 7.49e+01 c.68.1.5 71892 1xpiA 231 7.57e+01 1v9kA 228 7.69e+01 d.265.1.3 108449 1j1lA 290 7.82e+01 b.82.1.12 90766 1o6lA 337 7.83e+01 d.144.1.7 81092 1h2kA 349 7.85e+01 b.82.2.6 76572 2f9nA 245 7.89e+01 1q6hA 224 7.94e+01 d.26.1.1 95975 2bszA 278 8.02e+01 1z85A 234 8.05e+01 5abp 306 8.06e+01 8abp c.93.1.1 35651 1o6uA 403 8.12e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1hw5A 210 8.15e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1b77A 228 8.26e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1aonO 97 8.29e+01 b.35.1.1 24642 2f2lX 167 8.36e+01 1vorR 117 8.36e+01 1xg9A 260 8.44e+01 1zghA 260 8.44e+01 1rkiA 102 8.50e+01 1vmfA 145 8.52e+01 1qrrA 394 8.54e+01 1qrrA c.2.1.2 29824 1vpzA 73 8.55e+01 1yb3A 175 8.59e+01 1l4dB 122 8.64e+01 d.15.5.1 77684 2aa4A 289 8.65e+01 1o7dE 126 8.71e+01 1ni4B 341 8.79e+01 c.36.1.7,c.48.1.2 85729,85730 1ijbA 202 8.85e+01 c.62.1.1 71229 1wzoA 246 8.92e+01 1sxrA 183 8.96e+01 d.118.1.1 106101 1c24A 263 8.99e+01 1c24A d.127.1.1 41148