# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xzpB 150 4.32e-01 1ha3A 405 6.05e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1ts9A 102 8.23e-01 1vjtA 483 1.76e+00 c.2.1.5,d.162.1.2 100833,100834 1kqqA 139 1.83e+00 a.4.3.1 72885 1v3fA 120 1.90e+00 a.4.5.31 100289 1s5aA 150 1.94e+00 d.17.4.10 98525 2c78A 405 2.17e+00 1kg0C 136 2.49e+00 d.169.1.1 72445 1y14B 171 2.50e+00 1exmA 405 2.65e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2h6lA 146 2.72e+00 1zp7A 206 3.24e+00 1l6pA 125 4.57e+00 b.1.17.1 73626 1mgqA 83 5.13e+00 b.38.1.1 79099 1zq1A 438 5.38e+00 1m2eA 135 5.51e+00 c.23.1.5 78478 1zx5A 300 5.79e+00 1khoA 370 5.90e+00 a.124.1.1,b.12.1.3 72489,72490 2fwkA 121 5.93e+00 1dqeA 137 5.94e+00 1dqeA a.39.2.1 17388 1gtzA 156 6.15e+00 c.23.13.1 70539 1pdkB 157 6.58e+00 1pdkB b.2.3.2 22427 2fcfA 103 7.58e+00 1d0iA 156 8.69e+00 2dhqA c.23.13.1 31383 1dhn 121 9.09e+00 1dhn d.96.1.3 40663 1s4cA 155 1.09e+01 1rznA 205 1.13e+01 1b00A 127 1.20e+01 3chy c.23.1.1 31122 2gaeA 346 1.22e+01 1p30A 952 1.26e+01 b.121.2.2,b.121.2.2 93964,93965 1t3kA 152 1.30e+01 c.46.1.1 106357 1ruxA 951 1.30e+01 1dhx 1zghA 260 1.35e+01 1xg9A 260 1.35e+01 1xfrA 128 1.38e+01 1dfcA 493 1.39e+01 1dfcA b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1iirA 415 1.44e+01 1iirA c.87.1.5 62453 1xw3A 110 1.46e+01 1xw4X 110 1.48e+01 1c9oA 66 1.53e+01 1mjc b.40.4.5 25325 1k3eA 156 1.57e+01 d.198.1.1 68103 1qqcA 773 1.58e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1v5iB 76 1.63e+01 1yzsA 121 1.64e+01 1c8bA 371 1.72e+01 1c8bA c.56.1.2 59082 2d9rA 104 1.76e+01 1vm6A 228 1.76e+01 c.2.1.3,d.81.1.3 108876,108877 1yavA 159 1.80e+01 2ae0X 345 1.87e+01 2stv 195 1.89e+01 2stv b.121.7.1 23287 2bukA 196 1.91e+01 1q15A 503 2.01e+01 c.26.2.1,d.153.1.1 95538,95539 1yl31 118 2.02e+01 1ibyA 112 2.08e+01 1ibzA b.6.1.4 62233 1jopA 155 2.10e+01 b.82.2.7 84187 1vjrA 271 2.12e+01 c.108.1.14 100832 1j7qA 86 2.13e+01 1j7rA a.39.1.5 62700 1pszA 303 2.20e+01 1toaA c.92.2.2 35600 1nykA 165 2.28e+01 b.33.1.1 86408 1wi5A 119 2.31e+01 1zoyB 252 2.32e+01 1yz1A 174 2.62e+01 1wjnA 97 2.62e+01 1x74A 360 2.85e+01 1dbhA 354 2.85e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1eajA 126 2.93e+01 1f5wA b.1.1.1 59401 1xneA 113 2.94e+01 1em8B 112 3.03e+01 c.126.1.1 90458 1x9bA 53 3.09e+01 2cwpA 112 3.13e+01 2h88B 252 3.15e+01 1iktA 120 3.16e+01 d.106.1.1 66188 1ixh 321 3.19e+01 1ixh c.94.1.1 35761 1wf7A 103 3.21e+01 1vybA 238 3.22e+01 d.151.1.1 108897 1bf6A 291 3.27e+01 1pscA c.1.9.3 29065 1quuA 250 3.34e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1gyzA 60 3.50e+01 a.144.2.1 70793 2fbwB 252 3.50e+01 1ospH 218 3.51e+01 1igtB b.1.1.1,b.1.1.2 20117,21147 2hciA 69 3.55e+01 1dmhA 311 3.57e+01 1dmhA b.3.6.1 22633 1yezA 68 3.61e+01 1m8aA 70 3.65e+01 d.9.1.1 74579 1t2lA 141 3.72e+01 1cyw 205 3.73e+01 1cyx b.6.1.2 23024 1p2zA 968 3.82e+01 b.121.2.2,b.121.2.2 93962,93963 1qzgA 187 3.85e+01 b.40.4.3 96643 1vkfA 188 3.91e+01 c.1.29.1 108656 1ig0A 319 4.02e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1drw 273 4.07e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1uz5A 402 4.20e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1u0mA 382 4.28e+01 c.95.1.2,c.95.1.2 107557,107558 1ccwA 137 4.43e+01 1be1 c.23.6.1 31238 2b6nA 278 4.49e+01 2g6fX 59 4.75e+01 1bmtA 246 4.81e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1yueA 427 4.83e+01 1p5sA 203 4.83e+01 a.40.1.1 94147 1p2xA 159 4.86e+01 a.40.1.1 104062 1k28D 391 4.92e+01 b.106.1.1,b.106.1.1 68052,68053 1kskA 234 5.03e+01 d.66.1.5,d.265.1.3 72920,90389 2fb7A 95 5.04e+01 1fdr 248 5.09e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1udmA 149 5.15e+01 d.109.1.2 107780 1f32A 149 5.27e+01 1f32A d.62.1.1 39539 1ux6A 350 5.27e+01 b.29.1.16,g.75.1.1 100145,100146 1inp 400 5.54e+01 1inp e.7.1.1 42972 1tc1A 220 5.57e+01 1tc1A c.61.1.1 34083 1vfqA 143 5.83e+01 1g2cB 43 5.88e+01 1g2cB 1zesA 125 5.99e+01 1k8tA 510 6.01e+01 e.41.1.1 68316 1s1hC 192 6.11e+01 i.1.1.1 105156 1s3rA 535 6.27e+01 1t3yA 141 6.38e+01 2atrA 138 6.67e+01 1j1lA 290 6.70e+01 b.82.1.12 90766 2ak5A 64 6.77e+01 1i0lA 221 6.87e+01 c.61.1.1 71096 1yyaA 250 6.95e+01 1v6fA 151 7.04e+01 d.109.1.2 108395 1yfuA 174 7.06e+01 1cyx 205 7.10e+01 1cyx b.6.1.2 23023 1dzaA 129 7.15e+01 7rsa d.5.1.1 37275 1k8qA 377 7.18e+01 c.69.1.6 72177 1f56A 91 7.29e+01 2cbp b.6.1.1 22896 1l1jA 239 7.36e+01 b.47.1.1 84516 2cjaA 522 7.47e+01 1wthD 391 7.47e+01 1qd5A 275 7.65e+01 1qd5A f.4.2.1 43748 1p97A 114 7.68e+01 d.110.3.7 94382 2g9zA 348 7.76e+01 1cjbA 231 8.00e+01 1qk3A c.61.1.1 34079 2gu2A 312 8.00e+01 1zy9A 564 8.09e+01 1vkkA 154 8.10e+01 d.109.1.2 108669 1vg8A 207 8.12e+01 c.37.1.8 108606 1avaC 181 8.39e+01 1avaC b.42.4.1 25604 1jtgB 165 8.43e+01 d.98.1.1 67267 1gheA 177 8.52e+01 d.108.1.1 76222 1o4tA 133 8.80e+01 b.82.1.9 86622 1mxmA 254 8.89e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1f3uB 171 9.00e+01 1f3uB b.65.1.1 27525