Please cite the following papers:
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Description | Link to file | Date |
Inputs |
Submitted sequence(s) | T0386.a2m | 2006 Aug 2 14:04:24 |
README file | README | 2006 Aug 2 14:05:26 |
Quick blastp of non-redundant PDB | T0386.pdb.blast | 2006 Aug 2 14:05:28 |
Multiple alignment |
SAM_t06 multiple alignment in a2m format | T0386.t06.a2m.gz | 2006 Aug 2 14:12:21 |
SAM_t06 multiple alignment in pretty html format | T0386.t06.pa.html | 2006 Aug 2 14:12:26 |
SAM_t06 target hidden Markov model | T0386.t06.w0.5.mod | 2006 Aug 2 14:12:29 |
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) | T0386.t06.w0.5-logo | 2006 Aug 2 14:12:44 |
Script for highlighting in rasmol | conserved_t06 | 2006 Aug 2 14:12:45 |
SAM_t04 multiple alignment in a2m format | T0386.t04.a2m.gz | 2006 Aug 2 14:18:18 |
SAM_t04 multiple alignment in pretty html format | T0386.t04.pa.html | 2006 Aug 2 14:18:24 |
SAM_t04 target hidden Markov model | T0386.t04.w0.5.mod | 2006 Aug 2 14:18:29 |
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0386.t04.w0.5-logo | 2006 Aug 2 14:18:46 |
Script for highlighting in rasmol | conserved_t04 | 2006 Aug 2 14:18:48 |
SAM_t2k multiple alignment in a2m format | T0386.t2k.a2m.gz | 2006 Aug 2 14:21:11 |
SAM_t2k multiple alignment in pretty html format | T0386.t2k.pa.html | 2006 Aug 2 14:21:18 |
SAM_t2k target hidden Markov model | T0386.t2k.w0.5.mod | 2006 Aug 2 14:21:20 |
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0386.t2k.w0.5-logo | 2006 Aug 2 14:21:33 |
Script for highlighting in rasmol | conserved_t2k | 2006 Aug 2 14:21:34 |
Secondary Structure Prediction (Explanation of secondary-structure predictions) |
str2 structure prediction (rdb format) (seq format) | T0386.t06.str2 | 2006 Aug 2 14:12:35 |
Script for T0386.t06.str2 coloring in rasmol | T0386.t06.str2-color.rasmol | 2006 Aug 2 14:21:36 |
str2---sequence logo (eps format) (pdf format) | T0386.t06.str2-logo | 2006 Aug 2 14:21:46 |
str2 structure prediction (rdb format) (seq format) | T0386.t04.str2 | 2006 Aug 2 14:18:37 |
Script for T0386.t04.str2 coloring in rasmol | T0386.t04.str2-color.rasmol | 2006 Aug 2 14:21:47 |
str2---sequence logo (eps format) (pdf format) | T0386.t04.str2-logo | 2006 Aug 2 14:21:57 |
str2 structure prediction (rdb format) (seq format) | T0386.t2k.str2 | 2006 Aug 2 14:21:24 |
Script for T0386.t2k.str2 coloring in rasmol | T0386.t2k.str2-color.rasmol | 2006 Aug 2 14:21:58 |
str2---sequence logo (eps format) (pdf format) | T0386.t2k.str2-logo | 2006 Aug 2 14:22:07 |
stride-ebghtl structure prediction (rdb format) (seq format) | T0386.t06.stride-ebghtl | 2006 Aug 2 14:22:11 |
Script for T0386.t06.stride-ebghtl coloring in rasmol | T0386.t06.stride-ebghtl-color.rasmol | 2006 Aug 2 14:22:12 |
stride-ebghtl---sequence logo (eps format) (pdf format) | T0386.t06.stride-ebghtl-logo | 2006 Aug 2 14:22:22 |
stride-ebghtl structure prediction (rdb format) (seq format) | T0386.t04.stride-ebghtl | 2006 Aug 2 14:22:25 |
Script for T0386.t04.stride-ebghtl coloring in rasmol | T0386.t04.stride-ebghtl-color.rasmol | 2006 Aug 2 14:22:26 |
stride-ebghtl---sequence logo (eps format) (pdf format) | T0386.t04.stride-ebghtl-logo | 2006 Aug 2 14:22:35 |
stride-ebghtl structure prediction (rdb format) (seq format) | T0386.t2k.stride-ebghtl | 2006 Aug 2 14:22:37 |
Script for T0386.t2k.stride-ebghtl coloring in rasmol | T0386.t2k.stride-ebghtl-color.rasmol | 2006 Aug 2 14:22:37 |
stride-ebghtl---sequence logo (eps format) (pdf format) | T0386.t2k.stride-ebghtl-logo | 2006 Aug 2 14:22:47 |
dssp-ebghstl structure prediction (rdb format) (seq format) | T0386.t06.dssp-ebghstl | 2006 Aug 2 14:22:50 |
Script for T0386.t06.dssp-ebghstl coloring in rasmol | T0386.t06.dssp-ebghstl-color.rasmol | 2006 Aug 2 14:22:51 |
dssp-ebghstl---sequence logo (eps format) (pdf format) | T0386.t06.dssp-ebghstl-logo | 2006 Aug 2 14:23:01 |
dssp-ebghstl structure prediction (rdb format) (seq format) | T0386.t04.dssp-ebghstl | 2006 Aug 2 14:23:04 |
Script for T0386.t04.dssp-ebghstl coloring in rasmol | T0386.t04.dssp-ebghstl-color.rasmol | 2006 Aug 2 14:23:04 |
dssp-ebghstl---sequence logo (eps format) (pdf format) | T0386.t04.dssp-ebghstl-logo | 2006 Aug 2 14:23:14 |
dssp-ebghstl structure prediction (rdb format) (seq format) | T0386.t2k.dssp-ebghstl | 2006 Aug 2 14:23:17 |
Script for T0386.t2k.dssp-ebghstl coloring in rasmol | T0386.t2k.dssp-ebghstl-color.rasmol | 2006 Aug 2 14:23:17 |
dssp-ebghstl---sequence logo (eps format) (pdf format) | T0386.t2k.dssp-ebghstl-logo | 2006 Aug 2 14:23:28 |
alpha structure prediction (rdb format) (seq format) | T0386.t06.alpha | 2006 Aug 2 14:23:32 |
Script for T0386.t06.alpha coloring in rasmol | T0386.t06.alpha-color.rasmol | 2006 Aug 2 14:23:33 |
alpha---sequence logo (eps format) (pdf format) | T0386.t06.alpha-logo | 2006 Aug 2 14:23:42 |
alpha structure prediction (rdb format) (seq format) | T0386.t04.alpha | 2006 Aug 2 14:23:45 |
Script for T0386.t04.alpha coloring in rasmol | T0386.t04.alpha-color.rasmol | 2006 Aug 2 14:23:46 |
alpha---sequence logo (eps format) (pdf format) | T0386.t04.alpha-logo | 2006 Aug 2 14:23:56 |
alpha structure prediction (rdb format) (seq format) | T0386.t2k.alpha | 2006 Aug 2 14:23:58 |
Script for T0386.t2k.alpha coloring in rasmol | T0386.t2k.alpha-color.rasmol | 2006 Aug 2 14:23:59 |
alpha---sequence logo (eps format) (pdf format) | T0386.t2k.alpha-logo | 2006 Aug 2 14:24:09 |
bys structure prediction (rdb format) (seq format) | T0386.t06.bys | 2006 Aug 2 14:24:12 |
Script for T0386.t06.bys coloring in rasmol | T0386.t06.bys-color.rasmol | 2006 Aug 2 14:24:13 |
bys---sequence logo (eps format) (pdf format) | T0386.t06.bys-logo | 2006 Aug 2 14:24:23 |
bys structure prediction (rdb format) (seq format) | T0386.t04.bys | 2006 Aug 2 14:24:26 |
Script for T0386.t04.bys coloring in rasmol | T0386.t04.bys-color.rasmol | 2006 Aug 2 14:24:27 |
bys---sequence logo (eps format) (pdf format) | T0386.t04.bys-logo | 2006 Aug 2 14:24:36 |
bys structure prediction (rdb format) (seq format) | T0386.t2k.bys | 2006 Aug 2 14:24:39 |
Script for T0386.t2k.bys coloring in rasmol | T0386.t2k.bys-color.rasmol | 2006 Aug 2 14:24:40 |
bys---sequence logo (eps format) (pdf format) | T0386.t2k.bys-logo | 2006 Aug 2 14:24:49 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0386.t06.dssp-ehl2 | 2006 Aug 2 14:24:51 |
Script for T0386.t06.dssp-ehl2 coloring in rasmol | T0386.t06.dssp-ehl2-color.rasmol | 2006 Aug 2 14:24:51 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0386.t06.dssp-ehl2-logo | 2006 Aug 2 14:25:01 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0386.t04.dssp-ehl2 | 2006 Aug 2 14:25:02 |
Script for T0386.t04.dssp-ehl2 coloring in rasmol | T0386.t04.dssp-ehl2-color.rasmol | 2006 Aug 2 14:25:03 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0386.t04.dssp-ehl2-logo | 2006 Aug 2 14:25:12 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0386.t2k.dssp-ehl2 | 2006 Aug 2 14:25:13 |
Script for T0386.t2k.dssp-ehl2 coloring in rasmol | T0386.t2k.dssp-ehl2-color.rasmol | 2006 Aug 2 14:25:14 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0386.t2k.dssp-ehl2-logo | 2006 Aug 2 14:25:24 |
n_notor2 structure prediction (rdb format) (seq format) | T0386.t06.n_notor2 | 2006 Aug 2 14:25:27 |
Script for T0386.t06.n_notor2 coloring in rasmol | T0386.t06.n_notor2-color.rasmol | 2006 Aug 2 14:25:28 |
n_notor2---sequence logo (eps format) (pdf format) | T0386.t06.n_notor2-logo | 2006 Aug 2 14:25:38 |
n_notor2 structure prediction (rdb format) (seq format) | T0386.t04.n_notor2 | 2006 Aug 2 14:25:41 |
Script for T0386.t04.n_notor2 coloring in rasmol | T0386.t04.n_notor2-color.rasmol | 2006 Aug 2 14:25:42 |
n_notor2---sequence logo (eps format) (pdf format) | T0386.t04.n_notor2-logo | 2006 Aug 2 14:25:51 |
n_notor2 structure prediction (rdb format) (seq format) | T0386.t2k.n_notor2 | 2006 Aug 2 14:25:54 |
Script for T0386.t2k.n_notor2 coloring in rasmol | T0386.t2k.n_notor2-color.rasmol | 2006 Aug 2 14:25:55 |
n_notor2---sequence logo (eps format) (pdf format) | T0386.t2k.n_notor2-logo | 2006 Aug 2 14:26:05 |
o_notor2 structure prediction (rdb format) (seq format) | T0386.t06.o_notor2 | 2006 Aug 2 14:26:08 |
Script for T0386.t06.o_notor2 coloring in rasmol | T0386.t06.o_notor2-color.rasmol | 2006 Aug 2 14:26:09 |
o_notor2---sequence logo (eps format) (pdf format) | T0386.t06.o_notor2-logo | 2006 Aug 2 14:26:19 |
o_notor2 structure prediction (rdb format) (seq format) | T0386.t04.o_notor2 | 2006 Aug 2 14:26:22 |
Script for T0386.t04.o_notor2 coloring in rasmol | T0386.t04.o_notor2-color.rasmol | 2006 Aug 2 14:26:23 |
o_notor2---sequence logo (eps format) (pdf format) | T0386.t04.o_notor2-logo | 2006 Aug 2 14:26:33 |
o_notor2 structure prediction (rdb format) (seq format) | T0386.t2k.o_notor2 | 2006 Aug 2 14:26:36 |
Script for T0386.t2k.o_notor2 coloring in rasmol | T0386.t2k.o_notor2-color.rasmol | 2006 Aug 2 14:26:37 |
o_notor2---sequence logo (eps format) (pdf format) | T0386.t2k.o_notor2-logo | 2006 Aug 2 14:26:47 |
n_sep structure prediction (rdb format) (seq format) | T0386.t06.n_sep | 2006 Aug 2 14:26:50 |
Script for T0386.t06.n_sep coloring in rasmol | T0386.t06.n_sep-color.rasmol | 2006 Aug 2 14:26:51 |
n_sep---sequence logo (eps format) (pdf format) | T0386.t06.n_sep-logo | 2006 Aug 2 14:27:01 |
n_sep structure prediction (rdb format) (seq format) | T0386.t04.n_sep | 2006 Aug 2 14:27:04 |
Script for T0386.t04.n_sep coloring in rasmol | T0386.t04.n_sep-color.rasmol | 2006 Aug 2 14:27:05 |
n_sep---sequence logo (eps format) (pdf format) | T0386.t04.n_sep-logo | 2006 Aug 2 14:27:15 |
n_sep structure prediction (rdb format) (seq format) | T0386.t2k.n_sep | 2006 Aug 2 14:27:18 |
Script for T0386.t2k.n_sep coloring in rasmol | T0386.t2k.n_sep-color.rasmol | 2006 Aug 2 14:27:18 |
n_sep---sequence logo (eps format) (pdf format) | T0386.t2k.n_sep-logo | 2006 Aug 2 14:27:28 |
o_sep structure prediction (rdb format) (seq format) | T0386.t06.o_sep | 2006 Aug 2 14:27:31 |
Script for T0386.t06.o_sep coloring in rasmol | T0386.t06.o_sep-color.rasmol | 2006 Aug 2 14:27:32 |
o_sep---sequence logo (eps format) (pdf format) | T0386.t06.o_sep-logo | 2006 Aug 2 14:27:42 |
o_sep structure prediction (rdb format) (seq format) | T0386.t04.o_sep | 2006 Aug 2 14:27:45 |
Script for T0386.t04.o_sep coloring in rasmol | T0386.t04.o_sep-color.rasmol | 2006 Aug 2 14:27:45 |
o_sep---sequence logo (eps format) (pdf format) | T0386.t04.o_sep-logo | 2006 Aug 2 14:27:55 |
o_sep structure prediction (rdb format) (seq format) | T0386.t2k.o_sep | 2006 Aug 2 14:27:57 |
Script for T0386.t2k.o_sep coloring in rasmol | T0386.t2k.o_sep-color.rasmol | 2006 Aug 2 14:27:58 |
o_sep---sequence logo (eps format) (pdf format) | T0386.t2k.o_sep-logo | 2006 Aug 2 14:28:08 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0386.dssp-ehl2 | 2006 Aug 2 14:28:10 |
Script for T0386.dssp-ehl2 coloring in rasmol | T0386.dssp-ehl2-color.rasmol | 2006 Aug 2 14:28:10 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0386.dssp-ehl2-logo | 2006 Aug 2 14:28:20 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0386.t06.CB_burial_14_7 | 2006 Aug 2 14:28:23 |
Script for T0386.t06.CB_burial_14_7 coloring in rasmol | T0386.t06.CB_burial_14_7-color.rasmol | 2006 Aug 2 14:28:23 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0386.t06.CB_burial_14_7-logo | 2006 Aug 2 14:28:32 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0386.t04.CB_burial_14_7 | 2006 Aug 2 14:28:35 |
Script for T0386.t04.CB_burial_14_7 coloring in rasmol | T0386.t04.CB_burial_14_7-color.rasmol | 2006 Aug 2 14:28:36 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0386.t04.CB_burial_14_7-logo | 2006 Aug 2 14:28:45 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0386.t2k.CB_burial_14_7 | 2006 Aug 2 14:28:48 |
Script for T0386.t2k.CB_burial_14_7 coloring in rasmol | T0386.t2k.CB_burial_14_7-color.rasmol | 2006 Aug 2 14:28:48 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0386.t2k.CB_burial_14_7-logo | 2006 Aug 2 14:28:57 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0386.t06.near-backbone-11 | 2006 Aug 2 14:29:00 |
Script for T0386.t06.near-backbone-11 coloring in rasmol | T0386.t06.near-backbone-11-color.rasmol | 2006 Aug 2 14:29:01 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0386.t06.near-backbone-11-logo | 2006 Aug 2 14:29:10 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0386.t04.near-backbone-11 | 2006 Aug 2 14:29:14 |
Script for T0386.t04.near-backbone-11 coloring in rasmol | T0386.t04.near-backbone-11-color.rasmol | 2006 Aug 2 14:29:14 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0386.t04.near-backbone-11-logo | 2006 Aug 2 14:29:24 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0386.t2k.near-backbone-11 | 2006 Aug 2 14:29:28 |
Script for T0386.t2k.near-backbone-11 coloring in rasmol | T0386.t2k.near-backbone-11-color.rasmol | 2006 Aug 2 14:29:28 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0386.t2k.near-backbone-11-logo | 2006 Aug 2 14:29:37 |
Target model scores |
amino acid single-track target model scores of PDB | T0386.t06-w0.5-scores.html | 2006 Aug 2 14:32:44 |
amino acid single-track target model scores of PDB | T0386.t04-w0.5-scores.html | 2006 Aug 2 14:36:03 |
amino acid single-track target model scores of PDB | T0386.t2k-w0.5-scores.html | 2006 Aug 2 14:39:43 |
amino acid/100-30-str2 multi-track target model scores | T0386.t06-100-30-str2-scores.html | 2006 Aug 2 14:40:43 |
amino acid/100-30-stride-ebghtl multi-track target model scores | T0386.t06-100-30-stride-ebghtl-scores.html | 2006 Aug 2 14:41:42 |
amino acid/100-30-dssp-ebghstl multi-track target model scores | T0386.t06-100-30-dssp-ebghstl-scores.html | 2006 Aug 2 14:42:40 |
amino acid/100-30-alpha multi-track target model scores | T0386.t06-100-30-alpha-scores.html | 2006 Aug 2 14:43:39 |
amino acid/100-30-bys multi-track target model scores | T0386.t06-100-30-bys-scores.html | 2006 Aug 2 14:44:39 |
amino acid/100-30-dssp-ehl2 multi-track target model scores | T0386.t06-100-30-dssp-ehl2-scores.html | 2006 Aug 2 14:45:38 |
amino acid/100-30-n_notor2 multi-track target model scores | T0386.t06-100-30-n_notor2-scores.html | 2006 Aug 2 14:46:35 |
amino acid/100-30-o_notor2 multi-track target model scores | T0386.t06-100-30-o_notor2-scores.html | 2006 Aug 2 14:47:35 |
amino acid/100-30-n_sep multi-track target model scores | T0386.t06-100-30-n_sep-scores.html | 2006 Aug 2 14:48:37 |
amino acid/100-30-o_sep multi-track target model scores | T0386.t06-100-30-o_sep-scores.html | 2006 Aug 2 14:49:37 |
amino acid/100-30-CB_burial_14_7 multi-track target model scores | T0386.t06-100-30-CB_burial_14_7-scores.html | 2006 Aug 2 14:50:34 |
amino acid/100-30-near-backbone-11 multi-track target model scores | T0386.t06-100-30-near-backbone-11-scores.html | 2006 Aug 2 14:51:35 |
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores | T0386.t06-100-40-40-str2+CB_burial_14_7-scores.html | 2006 Aug 2 14:52:42 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0386.t06-80-60-80-str2+near-backbone-11-scores.html | 2006 Aug 2 14:53:47 |
amino acid/100-30-str2 multi-track target model scores | T0386.t04-100-30-str2-scores.html | 2006 Aug 2 14:55:07 |
amino acid/100-30-stride-ebghtl multi-track target model scores | T0386.t04-100-30-stride-ebghtl-scores.html | 2006 Aug 2 14:56:27 |
amino acid/100-30-dssp-ebghstl multi-track target model scores | T0386.t04-100-30-dssp-ebghstl-scores.html | 2006 Aug 2 14:57:53 |
amino acid/100-30-alpha multi-track target model scores | T0386.t04-100-30-alpha-scores.html | 2006 Aug 2 14:59:19 |
amino acid/100-30-bys multi-track target model scores | T0386.t04-100-30-bys-scores.html | 2006 Aug 2 15:00:41 |
amino acid/100-30-dssp-ehl2 multi-track target model scores | T0386.t04-100-30-dssp-ehl2-scores.html | 2006 Aug 2 15:02:02 |
amino acid/100-30-n_notor2 multi-track target model scores | T0386.t04-100-30-n_notor2-scores.html | 2006 Aug 2 15:03:28 |
amino acid/100-30-o_notor2 multi-track target model scores | T0386.t04-100-30-o_notor2-scores.html | 2006 Aug 2 15:04:49 |
amino acid/100-30-n_sep multi-track target model scores | T0386.t04-100-30-n_sep-scores.html | 2006 Aug 2 15:06:12 |
amino acid/100-30-o_sep multi-track target model scores | T0386.t04-100-30-o_sep-scores.html | 2006 Aug 2 15:07:34 |
amino acid/100-30-CB_burial_14_7 multi-track target model scores | T0386.t04-100-30-CB_burial_14_7-scores.html | 2006 Aug 2 15:08:54 |
amino acid/100-30-near-backbone-11 multi-track target model scores | T0386.t04-100-30-near-backbone-11-scores.html | 2006 Aug 2 15:10:15 |
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores | T0386.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2006 Aug 2 15:11:42 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0386.t04-80-60-80-str2+near-backbone-11-scores.html | 2006 Aug 2 15:13:12 |
amino acid/100-30-str2 multi-track target model scores | T0386.t2k-100-30-str2-scores.html | 2006 Aug 2 15:14:56 |
amino acid/100-30-stride-ebghtl multi-track target model scores | T0386.t2k-100-30-stride-ebghtl-scores.html | 2006 Aug 2 15:16:47 |
amino acid/100-30-dssp-ebghstl multi-track target model scores | T0386.t2k-100-30-dssp-ebghstl-scores.html | 2006 Aug 2 15:18:33 |
amino acid/100-30-alpha multi-track target model scores | T0386.t2k-100-30-alpha-scores.html | 2006 Aug 2 15:20:16 |
amino acid/100-30-bys multi-track target model scores | T0386.t2k-100-30-bys-scores.html | 2006 Aug 2 15:21:59 |
amino acid/100-30-dssp-ehl2 multi-track target model scores | T0386.t2k-100-30-dssp-ehl2-scores.html | 2006 Aug 2 15:23:42 |
amino acid/100-30-n_notor2 multi-track target model scores | T0386.t2k-100-30-n_notor2-scores.html | 2006 Aug 2 15:25:27 |
amino acid/100-30-o_notor2 multi-track target model scores | T0386.t2k-100-30-o_notor2-scores.html | 2006 Aug 2 15:27:14 |
amino acid/100-30-n_sep multi-track target model scores | T0386.t2k-100-30-n_sep-scores.html | 2006 Aug 2 15:28:57 |
amino acid/100-30-o_sep multi-track target model scores | T0386.t2k-100-30-o_sep-scores.html | 2006 Aug 2 15:30:39 |
amino acid/100-30-CB_burial_14_7 multi-track target model scores | T0386.t2k-100-30-CB_burial_14_7-scores.html | 2006 Aug 2 15:32:22 |
amino acid/100-30-near-backbone-11 multi-track target model scores | T0386.t2k-100-30-near-backbone-11-scores.html | 2006 Aug 2 15:34:09 |
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores | T0386.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2006 Aug 2 15:36:04 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0386.t2k-80-60-80-str2+near-backbone-11-scores.html | 2006 Aug 2 15:38:01 |
Template model scores |
Annotated t06 template model scores | T0386.t06-template-lib-scores.html | 2006 Aug 2 16:11:50 |
Annotated t04 template model scores | T0386.t04-template-lib-scores.html | 2006 Aug 2 17:02:10 |
Annotated t2k template model scores | T0386.t2k-template-lib-scores.html | 2006 Aug 2 18:07:52 |
Top Hits |
Best scoring hits from t06 HMMs | T0386.t06.best-scores.html | 2006 Aug 2 18:07:56 |
Best scoring hits from t04 HMMs | T0386.t04.best-scores.html | 2006 Aug 2 18:07:59 |
Best scoring hits from t2k HMMs | T0386.t2k.best-scores.html | 2006 Aug 2 18:08:02 |
Best scoring hits from combining t06 t04 t2k | T0386.best-scores.html | 2006 Aug 2 18:08:05 |
Alignments for Top Hits |
Top alignments from t06 hits | T0386.t06.top_reported_alignments.html | 2006 Aug 2 20:28:05 |
Top alignments from t04 hits | T0386.t04.top_reported_alignments.html | 2006 Aug 2 20:28:24 |
Top alignments from t2k hits | T0386.t2k.top_reported_alignments.html | 2006 Aug 2 20:28:52 |
Top alignments from combined hits | T0386.top_reported_alignments.html | 2006 Aug 2 20:29:04 |
multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2006 Aug 2 20:29:56 |
Undertaker (3d) files |
Undertaker input for top t06 alignments | T0386.t06.undertaker-align.under | 2006 Aug 2 20:29:58 |
Undertaker input for top t04 alignments | T0386.t04.undertaker-align.under | 2006 Aug 2 20:29:58 |
Undertaker input for top t2k alignments | T0386.t2k.undertaker-align.under | 2006 Aug 2 20:29:58 |
Undertaker input for top combined alignments | T0386.undertaker-align.under | 2006 Aug 2 20:29:59 |
PDB file with model(s) for top alignments | T0386.undertaker-align.pdb.gz | 2006 Aug 2 20:31:29 |
Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.
Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Fragment list for undertaker (from fragfinder) | T0386.t06.many.frag.gz | 2006 Aug 2 20:33:49 |
Fragment list for undertaker (from fragfinder) | T0386.t04.many.frag.gz | 2006 Aug 2 20:34:35 |
Fragment list for undertaker (from fragfinder) | T0386.t2k.many.frag.gz | 2006 Aug 2 20:35:20 |
Contact predictions, based on |
contact predictions (rr format) (rr.constraints format) | T0386.449a_45 | 2006 Aug 2 20:37:45 |
First attempted model using undertaker | decoys/T0386.try1-opt2.pdb.gz | 2006 Aug 2 23:16:26 |
Images of complete model in decoys/T0386.try1-opt2.pdb.gz
Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Please cite the following papers:
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