# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 2.34e-18 2f6sA 201 6.84e-18 1d5rA 324 3.01e-03 1d5rA b.7.1.1,c.45.1.1 23181,32697 2shpA 525 7.41e-01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2b3oA 532 9.34e-01 2e2aA 105 1.62e+00 a.7.2.1 88499 1e2aA 105 1.89e+00 1e2aA a.7.2.1 16322 2bgxA 261 3.36e+00 1v7rA 186 3.64e+00 c.51.4.1 100482 2gupA 292 3.95e+00 2bh7A 261 4.24e+00 2ffuA 501 4.91e+00 1bn6A 294 5.14e+00 1bn6A c.69.1.8 34678 1bn7A 294 5.70e+00 1bn6A c.69.1.8 34677 2astA 159 6.17e+00 1gadO 330 6.75e+00 1dssG c.2.1.3,d.81.1.1 29950,39865 1j98A 157 7.68e+00 1j98A d.185.1.2 62755 1f28A 297 7.69e+00 1bkpA d.117.1.1 59608 1tzvA 142 8.60e+00 a.79.1.1 107526 2d2mB 142 9.33e+00 1yp2A 451 9.45e+00 1cqwA 295 9.79e+00 1b6g c.69.1.8 34679 1hlrA 907 1.03e+01 1vlbA 907 1.03e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1yuwA 554 1.12e+01 2f22A 144 1.36e+01 2b49A 287 1.37e+01 2fytA 340 1.42e+01 1ats 386 1.51e+01 1ba1 c.55.1.1,c.55.1.1 33423,33424 1te5A 257 1.52e+01 d.153.1.1 106795 1h7sA 365 1.53e+01 d.14.1.3,d.122.1.2 65705,65706 1rm4A 337 1.65e+01 c.2.1.3,d.81.1.1 105000,105001 1nepA 130 1.75e+01 b.1.18.7 80440 1atr 386 1.80e+01 1ba1 c.55.1.1,c.55.1.1 33421,33422 1bam 213 1.89e+01 1bam c.52.1.3 33285 1wyzA 242 1.89e+01 2cybA 323 1.93e+01 1f0jA 377 1.95e+01 1f0jA a.211.1.2 19346 1x3zA 335 1.97e+01 1f3lA 321 1.97e+01 1g6q2 c.66.1.6 59630 1kay 381 1.99e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1gakA 141 2.15e+01 1gakA a.19.1.1 16415 1bupA 386 2.27e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1dqrA 557 2.41e+01 1dqrA c.80.1.2 35305 1x0jA 122 2.41e+01 1hm5A 558 2.49e+01 c.80.1.2 76717 1u0fA 564 2.54e+01 1iatA 557 2.54e+01 1dqrA c.80.1.2 62123 1nozA 388 2.60e+01 1clqA c.55.3.5 33715 1f5xA 208 2.68e+01 1f5xA a.87.1.1 18516 1hpm 386 2.74e+01 1ba1 c.55.1.1,c.55.1.1 33381,33382 1njkA 156 2.81e+01 d.38.1.1 85818 2cxnA 557 2.83e+01 1sxjE 354 2.88e+01 a.80.1.1,c.37.1.20 106089,106090 1il6 185 2.98e+01 1alu a.26.1.1 16827 2hc1A 291 3.01e+01 1nw3A 416 3.04e+01 c.66.1.31 86288 1vk1A 242 3.13e+01 d.268.1.2 108634 2bhoA 130 3.15e+01 2h03A 291 3.37e+01 1u04A 771 3.46e+01 b.34.14.1,c.55.3.10 107539,107540 1j6wA 175 3.47e+01 1j98A d.185.1.2 62663 1ydlA 79 3.60e+01 1pmi 440 3.63e+01 1pmi b.82.1.3 28114 1o4vA 183 3.77e+01 c.23.8.1 86628 1nj4A 363 3.77e+01 b.105.1.1,e.3.1.1 80545,80546 1mw5A 187 3.82e+01 d.259.1.1 91477 1cv2A 296 3.84e+01 1bn6A c.69.1.8 34680 2d0sA 79 3.91e+01 1v9vA 114 3.94e+01 1hm6A 346 4.09e+01 1avc a.65.1.1 18147 1arzC 273 4.11e+01 1drw c.2.1.3,d.81.1.3 30061,39976 1na3A 91 4.23e+01 k.38.1.1 85481 1iz7A 295 4.24e+01 c.69.1.8 76982 2f1fA 164 4.36e+01 1wddS 128 4.41e+01 1pk5A 248 4.47e+01 a.123.1.1 88139 1r6fA 310 4.62e+01 e.46.1.1 97149 1ba1 386 4.68e+01 1ba1 c.55.1.1,c.55.1.1 33387,33388 1ukfA 188 4.90e+01 d.3.1.10 99488 1miuA 738 4.91e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1euiA 228 4.93e+01 3eugA c.18.1.1 31028 1z4eA 153 4.94e+01 1llfA 534 4.95e+01 c.69.1.17 78094 1cleA 534 4.98e+01 1thg c.69.1.17 34771 1npiA 61 5.23e+01 g.3.7.1 80685 1mj5A 302 5.27e+01 c.69.1.8 91285 1noyA 388 5.49e+01 1clqA c.55.3.5 33713 1q41A 424 5.51e+01 d.144.1.7 95774 1qhhA 167 5.61e+01 1pjr c.37.1.19 32393 1mzbA 136 5.62e+01 a.4.5.42 91497 1ih7A 903 5.94e+01 1clqA c.55.3.5,e.8.1.1 62375,62376 2avpA 70 6.00e+01 1j2zA 270 6.07e+01 b.81.1.1 90805 2fe7A 166 6.09e+01 2bshA 125 6.12e+01 1b7dA 61 6.14e+01 1aho g.3.7.1 44139 1khyA 148 6.14e+01 a.174.1.1 77410 1a17 166 6.25e+01 1a17 a.118.8.1 19206 1ht6A 405 6.26e+01 b.71.1.1,c.1.8.1 83629,83630 1t6cA 315 6.26e+01 c.55.1.8,c.55.1.8 106558,106559 1wcrA 103 6.26e+01 1y1xA 191 6.45e+01 1wjxA 122 6.48e+01 1clqA 903 6.48e+01 1clqA c.55.3.5,e.8.1.1 33717,43006 1u35C 120 6.57e+01 1euvA 221 6.76e+01 1euvA d.3.1.7 37133 1p27B 106 6.93e+01 d.58.7.1 93908 1pkoA 139 7.14e+01 b.1.1.1 88147 1ly7A 121 7.27e+01 d.82.2.1 74339 2gwdA 449 7.32e+01 1tq4A 413 7.40e+01 c.37.1.8 107201 2bsjA 133 7.50e+01 1y5eA 169 7.84e+01 1ha3A 405 7.91e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1rvkA 382 7.97e+01 c.1.11.2,d.54.1.1 97928,97929 1paqA 189 8.02e+01 a.118.1.14 94413 1j1bA 420 8.04e+01 d.144.1.7 90758 1zq9A 285 8.41e+01 1zx0A 236 8.49e+01 1alu 186 8.51e+01 1alu a.26.1.1 16826 1v1rA 400 8.54e+01 c.36.1.11 108272 1v5xA 203 8.68e+01 c.1.2.4 100377 2afwA 329 8.70e+01 1uzxA 169 8.77e+01 d.20.1.2 100238 1okrA 123 8.81e+01 a.4.5.39 93269 2bzlA 325 8.91e+01 1iqpA 327 8.98e+01 a.80.1.1,c.37.1.20 62649,62650