# List of top-scoring protein chains for T0386.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 5.84e-17 2f6sA 201 2.68e-16 1d5rA 324 3.47e-02 1d5rA b.7.1.1,c.45.1.1 23181,32697 1v7rA 186 5.89e+00 c.51.4.1 100482 1te5A 257 1.03e+01 d.153.1.1 106795 1f16A 192 1.07e+01 1f16A f.1.4.1 43400 1ojlA 304 1.16e+01 2gupA 292 1.30e+01 1e8gA 560 1.47e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1qltA 560 1.62e+01 1qltA d.58.32.1,d.145.1.1 39457,41720 2gk9A 401 2.04e+01 1dznA 560 2.05e+01 1qltA d.58.32.1,d.145.1.1 39471,41734 1e0yA 560 2.06e+01 1qltA d.58.32.1,d.145.1.1 39467,41730 1tkeA 224 2.07e+01 1jnsA 92 2.21e+01 d.26.1.1 84185 1fpwA 190 2.36e+01 1rec a.39.1.5 17329 1ynrA 80 2.39e+01 2g7sA 194 2.43e+01 1w1mA 560 2.50e+01 d.58.32.1,d.145.1.1 109067,109068 1w1lA 560 2.50e+01 d.58.32.1,d.145.1.1 109063,109064 1w1jA 560 2.51e+01 d.58.32.1,d.145.1.1 109055,109056 1vaoA 560 2.51e+01 1qltA d.58.32.1,d.145.1.1 39461,41724 1p9nA 170 2.53e+01 c.37.1.10 87997 1np6A 174 2.60e+01 c.37.1.10 85954 1hkvA 453 2.60e+01 b.49.2.3,c.1.6.1 83559,83560 1f0lA 535 3.10e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2fh5B 214 3.41e+01 1g8lA 411 3.56e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2cg4A 152 3.58e+01 1oazA 123 3.84e+01 c.47.1.1 92741 1nf3C 128 3.87e+01 b.36.1.1 85596 1ys9A 254 3.95e+01 1ni7A 155 4.07e+01 d.224.1.1 85738 2d9eA 121 4.21e+01 1t2bA 397 4.28e+01 1nwmX 142 4.42e+01 a.7.8.1 86301 1aj8A 371 4.43e+01 1aj8A a.103.1.1 18900 1w1kA 560 4.51e+01 d.58.32.1,d.145.1.1 109059,109060 1gwz 299 4.52e+01 2shpA c.45.1.2 32685 1qoiA 177 4.60e+01 2cpl b.62.1.1 27490 1zh8A 340 4.72e+01 1avc 673 4.77e+01 1avc a.65.1.1,a.65.1.1 18178,18179 1txiA 263 4.87e+01 1mkp 144 4.94e+01 1vhrA c.45.1.1 32654 1c4zD 154 5.07e+01 1u9aA d.20.1.1 38331 1hruA 188 5.07e+01 1hruA d.115.1.1 40926 1ie9A 259 5.28e+01 1db1A a.123.1.1 62318 1f9uA 347 5.38e+01 1bg2 c.37.1.9 59744 1ojt 482 5.39e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1bhy 482 5.42e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1f9wA 347 5.44e+01 1bg2 c.37.1.9 59746 1f9vA 347 5.46e+01 1bg2 c.37.1.9 59745 3kar 346 5.46e+01 1bg2 c.37.1.9 32198 1nafA 158 5.67e+01 a.7.8.1 85487 1f9tA 358 5.68e+01 1bg2 c.37.1.9 59743 1oxzA 186 5.72e+01 a.7.8.1 87542 2b3oA 532 5.87e+01 1na0A 125 5.98e+01 k.38.1.1 85479 1u24A 337 6.04e+01 7taa 478 6.20e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1kwiA 101 6.22e+01 d.17.1.3 77564 2taaA 478 6.27e+01 7taa b.71.1.1,c.1.8.1 27780,28767 1kopA 223 6.36e+01 2cba b.74.1.1 27966 1nviD 81 6.45e+01 d.15.3.1 86241 1wf0A 88 6.45e+01 1fm0D 81 6.48e+01 1fmaD d.15.3.1 37642 1pfpA 105 6.59e+01 d.17.1.3 94656 1na3A 91 6.67e+01 k.38.1.1 85481 1qjbA 245 6.70e+01 1qjaA a.118.7.1 19202 1e4mM 501 6.71e+01 1e70M c.1.8.4 59226 2c1nA 258 6.79e+01 1dwaM 499 6.81e+01 1e70M c.1.8.4 28928 1myr 501 6.82e+01 1e70M c.1.8.4 28925 2ab1A 122 6.98e+01 2d2mB 142 7.12e+01 1v02E 565 7.23e+01 c.1.8.4 108198 1bqcA 302 7.52e+01 1bqcA c.1.8.3 28831 1uedA 406 7.62e+01 a.104.1.1 99256 1v02A 565 7.63e+01 c.1.8.4 108194 1f1oA 431 7.75e+01 1f1oA a.127.1.1 19433 2budA 92 7.87e+01 1fprA 284 7.93e+01 2shpA c.45.1.2 59949 1ywtA 248 7.98e+01 1o8rA 94 8.01e+01 d.234.1.1 86677 2f2gA 221 8.10e+01 1cpy 421 8.23e+01 1ivyA c.69.1.5 34651 1o3xA 140 8.28e+01 a.7.8.1 86617 1ad3A 452 8.36e+01 1ad3A c.82.1.1 35335 1n62A 166 8.42e+01 a.56.1.1,d.15.4.2 80090,80091 1q7lB 88 8.73e+01 1z2nX 324 8.75e+01 2tir 108 8.80e+01 1thx c.47.1.1 32721 1xer 103 8.92e+01 1xer d.58.1.3 38990 1tho 109 9.00e+01 1thx c.47.1.1 32722