# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 1.63e-17 1d5rA 324 2.91e-02 1d5rA b.7.1.1,c.45.1.1 23181,32697 1exrA 148 1.47e-01 1cll a.39.1.5 17299 1w33A 181 2.92e-01 2cybA 323 6.51e-01 1ggzA 148 7.10e-01 a.39.1.5 70176 1wu4A 396 8.81e-01 1x0vA 354 9.54e-01 1u00A 227 9.87e-01 1nh1A 330 1.13e+00 e.45.1.1 91871 1z2nX 324 1.18e+00 1g8lA 411 1.48e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2bs3C 256 1.64e+00 1hw1A 239 2.30e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1di1A 300 2.33e+00 1di1A a.128.1.4 19446 1l5oA 356 2.48e+00 c.39.1.1 77711 2bjkA 516 2.58e+00 2abqA 306 2.74e+00 1u2kA 309 2.83e+00 1uzbA 516 2.95e+00 c.82.1.1 100220 1mxrA 375 3.46e+00 a.25.1.2 85197 1ux8A 132 3.57e+00 1uqtA 482 3.69e+00 c.87.1.6 99794 1t1gA 364 4.10e+00 c.41.1.2 106246 2f3yA 148 4.50e+00 1n1cA 217 4.73e+00 a.184.1.1 85254 5rubA 490 5.08e+00 1burA c.1.14.1,d.58.9.1 29382,39288 1eg3A 261 5.10e+00 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1f5nA 592 5.14e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 1ywfA 296 5.21e+00 1i5pA 633 5.22e+00 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1knyA 253 5.48e+00 1knyA a.24.16.1,d.218.1.1 75896,75897 1swxA 209 5.52e+00 a.224.1.1 106075 2g39A 497 6.02e+00 1euvA 221 6.30e+00 1euvA d.3.1.7 37133 1w7bA 339 7.05e+00 1zx0A 236 7.05e+00 2b7kA 200 7.08e+00 1mc2A 122 7.15e+00 a.133.1.2 74622 1clc 639 7.18e+00 1clc a.102.1.2,b.1.18.2 18835,21872 1w68A 390 7.30e+00 a.25.1.2 109216 1dw0A 112 7.38e+00 1dw0A a.3.1.1 15911 1lj8A 493 7.71e+00 a.100.1.9,c.2.1.6 90392,90393 2fug1 438 7.81e+00 1uxtA 501 8.04e+00 c.82.1.1 108125 1sznA 417 8.10e+00 b.71.1.1,c.1.8.1 106162,106163 1tueA 212 8.12e+00 c.37.1.20 107323 2cbiA 594 8.16e+00 1g8iA 190 8.72e+00 1rec a.39.1.5 60363 1pba 81 8.86e+00 1pytA d.58.3.1 39067 1x1tA 260 8.95e+00 1yqyA 523 8.99e+00 1n1bA 549 9.20e+00 a.102.4.1,a.128.1.3 79799,79800 1y10A 407 9.22e+00 1x42A 232 9.61e+00 1y8qB 640 9.68e+00 1bgp 309 9.74e+00 1bgp a.93.1.1 18690 1d7oA 297 9.90e+00 1enp c.2.1.2 29907 1z6oA 212 1.00e+01 1bm9A 122 1.01e+01 1bm9A a.4.5.7 16116 1ie9A 259 1.03e+01 1db1A a.123.1.1 62318 1cvrA 435 1.04e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1n62A 166 1.05e+01 a.56.1.1,d.15.4.2 80090,80091 1mwvA 714 1.05e+01 a.93.1.3,a.93.1.3 85161,85162 1kyqA 274 1.09e+01 c.2.1.11,e.37.1.1 73281,73282 2fiyA 309 1.09e+01 1mldA 314 1.10e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1r2rA 248 1.18e+01 c.1.1.1 96875 1tq4A 413 1.20e+01 c.37.1.8 107201 1sxvA 172 1.33e+01 1wbeA 209 1.38e+01 2fwtA 125 1.38e+01 1lk2A 274 1.40e+01 b.1.1.2,d.19.1.1 91056,91057 1yckA 175 1.41e+01 1yiiA 320 1.45e+01 2cwcA 303 1.48e+01 2a10A 125 1.48e+01 1k3yA 221 1.52e+01 a.45.1.1,c.47.1.5 77245,77246 2fsrA 195 1.58e+01 1vj7A 393 1.58e+01 a.211.1.1,d.218.1.8 100801,100802 2hbjA 410 1.58e+01 1q6zA 528 1.59e+01 2db3A 434 1.60e+01 1u46A 291 1.61e+01 d.144.1.7 107656 2fm9A 215 1.62e+01 1udh 244 1.65e+01 3eugA c.18.1.1 31015 2gmyA 153 1.65e+01 1m0kA 262 1.66e+01 f.13.1.1 78344 1na3A 91 1.68e+01 k.38.1.1 85481 2gauA 232 1.73e+01 1t4hA 290 1.77e+01 d.144.1.7 106420 1ihoA 283 1.78e+01 1ihoA c.26.1.4 62390 1cr1A 296 1.79e+01 1cr1A c.37.1.11 32286 2ccjA 205 1.82e+01 1rtwA 220 1.90e+01 a.132.1.3 97823 1t5oA 351 1.90e+01 c.124.1.5 106459 1wwrA 171 1.91e+01 1p1jA 533 1.94e+01 c.2.1.3,d.81.1.3 87687,87688 2f6hX 419 1.94e+01 1v54C 261 1.96e+01 f.25.1.1 100324 1k07A 263 1.98e+01 d.157.1.1 77218 1fgyA 127 2.02e+01 1faoA b.55.1.1 26976 2g7sA 194 2.02e+01 2au3A 407 2.05e+01 1sfxA 109 2.06e+01 a.4.5.50 105505 2fk8A 318 2.06e+01 2ex2A 458 2.09e+01 1ca1 370 2.11e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1nrwA 288 2.16e+01 c.108.1.10 86128 1wy7A 207 2.16e+01 2aqjA 538 2.25e+01 1alvA 173 2.30e+01 1alvA a.39.1.8 17370 1huxA 270 2.31e+01 1huxA c.55.1.5 61278 1w6kA 732 2.32e+01 1z23A 163 2.36e+01 1yn9A 169 2.39e+01 1qstA 160 2.39e+01 1yghA d.108.1.1 40804 1byrA 155 2.46e+01 1byrA d.136.1.1 41450 1vjqA 79 2.50e+01 k.43.1.1 100830 2he7A 283 2.51e+01 1h16A 759 2.55e+01 c.7.1.1 76462 1gu2A 124 2.59e+01 a.3.1.1 76348 1qhtA 775 2.61e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2gh1A 301 2.63e+01 1fcdA 401 2.63e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ppjD 241 2.63e+01 a.3.1.3,f.23.11.1 104258,104259 1fmcA 255 2.78e+01 1cydA c.2.1.2 29856 2h79A 269 2.78e+01 1u8xX 472 2.79e+01 c.2.1.5,d.162.1.2 107741,107742 1m0uA 249 2.80e+01 a.45.1.1,c.47.1.5 78359,78360 1gegA 256 2.80e+01 1ybvA c.2.1.2 29888 1h9oA 112 2.85e+01 1qadA d.93.1.1 60837 2bh7A 261 2.85e+01 1ki9A 192 2.93e+01 c.37.1.1 84404 2fjbA 643 2.95e+01 1jnrA 643 2.95e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1y4lA 121 3.01e+01 2bzlA 325 3.03e+01 2bgxA 261 3.04e+01 1ovnA 248 3.05e+01 a.71.1.1,c.47.1.7 93602,93603 1wmdA 434 3.07e+01 b.18.1.20,c.41.1.1 109408,109409 1aop 497 3.11e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1p5tA 127 3.22e+01 b.55.1.2 94148 1u6zA 513 3.23e+01 1qtwA 285 3.23e+01 1qumA c.1.15.1 29392 2g58A 121 3.27e+01 1zboA 210 3.31e+01 2bvfA 459 3.32e+01 1v4vA 376 3.35e+01 c.87.1.3 100313 1ej2A 181 3.37e+01 1f9aA c.26.1.3 59414 1sz2A 332 3.38e+01 1uh5A 329 3.42e+01 c.2.1.2 107840 1wfxA 186 3.43e+01 1rypD 241 3.49e+01 1rypD d.153.1.4 41935 2fe8A 315 3.51e+01 1vd3A 217 3.55e+01 1wy9A 147 3.56e+01 2c3gA 98 3.58e+01 1w53A 84 3.59e+01 a.186.1.2 109175 1kqfB 294 3.62e+01 d.58.1.5,f.23.22.1 75900,75901 1iu8A 206 3.65e+01 c.56.4.1 71436 2b69A 343 3.67e+01 1pinA 163 3.70e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1vqoB 338 3.72e+01 1ag9A 175 3.73e+01 1rcf c.23.5.1 31178 2g38A 99 3.85e+01 1j30A 144 3.88e+01 a.25.1.1 90806 1f0kA 364 3.88e+01 1f0kA c.87.1.2 35465 1fvgA 199 3.96e+01 1fvaA d.58.28.1 39408 1lehA 364 4.00e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1ls1A 295 4.05e+01 a.24.13.1,c.37.1.10 78170,78171 1r5yA 386 4.07e+01 c.1.20.1 97134 1iw0A 215 4.09e+01 a.132.1.1 83720 1m0wA 491 4.11e+01 c.30.1.4,d.142.1.6 78363,78364 1t46A 313 4.12e+01 d.144.1.7 106397 1h8dH 260 4.15e+01 5ptp 1sq5A 308 4.24e+01 c.37.1.6 105882 1bif 469 4.29e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1t4aA 84 4.29e+01 d.284.1.1 106404 2anxA 146 4.31e+01 2c5uA 375 4.31e+01 1yydA 357 4.32e+01 1dozA 309 4.34e+01 1ak1 c.92.1.1 35592 1auiB 169 4.35e+01 1auiB a.39.1.5 17325 1vqzA 341 4.36e+01 1q6hA 224 4.36e+01 d.26.1.1 95975 1q6uA 245 4.37e+01 d.26.1.1 95998 1nepA 130 4.37e+01 b.1.18.7 80440 1hw6A 278 4.37e+01 1frb c.1.7.1 61296 2f1nA 262 4.41e+01 1wzdA 215 4.43e+01 2ce0A 105 4.45e+01 1bc5A 269 4.45e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1fsgA 233 4.46e+01 1qk3A c.61.1.1 34029 1ui5A 215 4.47e+01 a.4.1.9,a.121.1.1 107856,107857 1vk6A 269 4.49e+01 d.113.1.4,d.113.1.4 100851,100852 2chnA 716 4.60e+01 1exqA 154 4.62e+01 1b9dA c.55.3.2 33646 2ivxA 257 4.64e+01 2ge3A 170 4.66e+01 1yspA 181 4.69e+01 2f9dA 125 4.71e+01 1r6oC 106 4.72e+01 1su8A 636 4.72e+01 e.26.1.2 98999 2fi9A 128 4.73e+01 1dvoA 152 4.74e+01 1dvoA a.136.1.1 19623 2choA 716 4.75e+01 1zq9A 285 4.78e+01 1j55A 95 4.79e+01 a.39.1.2 77078 1nxhA 126 4.80e+01 a.200.1.1 92300 1qqfA 277 4.87e+01 1c3d a.102.4.4 18875 1rro 108 4.87e+01 1a75A a.39.1.4 17195 1o2dA 371 4.88e+01 e.22.1.2 86591 1wwjA 105 4.90e+01 1oheA 348 4.90e+01 c.45.1.1,c.45.1.1 87013,87014 2fupA 168 4.97e+01 1yfsA 465 4.97e+01 1pfo 500 4.99e+01 1pfo f.9.1.1 43826 1mai 131 4.99e+01 1mai b.55.1.1 26951 2cdqA 510 5.09e+01 1xkyA 301 5.17e+01 1avsA 90 5.21e+01 1cll a.39.1.5 17226 2a2fX 325 5.26e+01 1u8vA 490 5.28e+01 2bszA 278 5.29e+01 1y5eA 169 5.30e+01 1i19A 561 5.34e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1wuiL 534 5.37e+01 1ubkL 534 5.38e+01 e.18.1.1 88422 1q8cA 151 5.41e+01 a.79.1.2 96202 1zx4A 192 5.43e+01 1qwiA 143 5.44e+01 d.227.1.1 96474 1vquA 374 5.48e+01 2gh0A 213 5.48e+01 1ars 396 5.50e+01 1ajsA c.67.1.1 34287 1vgmA 378 5.57e+01 1j5sA 463 5.62e+01 c.1.9.8 71580 1wsrA 375 5.63e+01 1kjqA 391 5.69e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2cvbA 188 5.69e+01 1ve0A 134 5.77e+01 1h3oB 76 5.79e+01 a.22.1.3 76645 1w6vA 141 5.85e+01 1xf1A 926 5.88e+01 2bs3A 656 5.92e+01 1uuyA 167 5.92e+01 c.57.1.1 108059 1nfvA 179 6.00e+01 a.25.1.1 85642 2a65A 519 6.00e+01 1wwpA 119 6.04e+01 2dg5A 366 6.07e+01 2fbhA 146 6.08e+01 1x0jA 122 6.08e+01 2gdqA 382 6.09e+01 1r6fA 310 6.11e+01 e.46.1.1 97149 1qkrA 188 6.16e+01 1qkrA a.24.9.1 16628 4tmkA 213 6.21e+01 5tmpA c.37.1.1 31930 1evlA 401 6.22e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1sc3A 178 6.27e+01 c.17.1.1 105416 2a14A 263 6.28e+01 1o4sA 389 6.36e+01 c.67.1.1 86620 1pu6A 218 6.42e+01 a.96.1.5 95123 1m1nA 491 6.47e+01 c.92.2.3 78417 2afbA 351 6.48e+01 1senA 164 6.50e+01 c.47.1.1 105465 1s9uA 207 6.52e+01 a.184.1.1 105390 1kid 203 6.56e+01 1derA c.8.5.1 30771 1ylmA 144 6.56e+01 1tazA 365 6.60e+01 a.211.1.2 106734 1p2fA 220 6.62e+01 a.4.6.1,c.23.1.1 87720,87721 1gadO 330 6.64e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1wmaA 276 6.67e+01 1u5dA 108 6.69e+01 1qfxA 460 6.71e+01 1qfxA c.60.1.2 33994 1bl0A 129 6.72e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1u24A 337 6.72e+01 1w4tA 299 6.73e+01 1ofcX 304 6.76e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2cohA 202 6.81e+01 1n46A 258 6.82e+01 a.123.1.1 85315 1josA 128 6.87e+01 d.52.7.1 84191 1vqrA 297 6.87e+01 1lrzA 426 6.89e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1ppjF 110 6.89e+01 f.27.1.1 104262 1r6dA 337 6.97e+01 c.2.1.2 97148 1wmwA 330 7.06e+01 1ykuA 136 7.07e+01 1rkbA 173 7.08e+01 1efyA 350 7.11e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1r7jA 95 7.12e+01 a.4.5.49 104836 1upvA 257 7.16e+01 1paqA 189 7.25e+01 a.118.1.14 94413 1h8eA 510 7.28e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1nkpB 83 7.31e+01 a.38.1.1 80574 2coeA 120 7.31e+01 2bjfA 329 7.45e+01 1mtpA 323 7.45e+01 e.1.1.1 85107 1mpgA 282 7.45e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1k1fA 72 7.46e+01 a.147.1.1 68007 2cvlA 124 7.53e+01 2bsjA 133 7.56e+01 1n35A 1267 7.60e+01 e.8.1.4 79935 1a59 378 7.61e+01 1aj8A a.103.1.1 18902 2iw2A 494 7.61e+01 1dp4A 435 7.63e+01 1dp4A c.93.1.1 35710 2es4D 332 7.68e+01 1tqhA 247 7.70e+01 c.69.1.29 107225 2g7jA 124 7.72e+01 1oflA 481 7.75e+01 b.80.1.4 103934 1tbxA 99 7.76e+01 a.4.5.48 106748 1h6kZ 98 7.78e+01 d.58.7.1 60686 2bc4B 211 7.90e+01 1id1A 153 7.94e+01 1id1A c.2.1.9 62286 1rcwA 231 7.99e+01 a.132.1.4 97299 1wurA 220 8.02e+01 1gt1A 159 8.06e+01 b.60.1.1 90515 1z5zA 271 8.07e+01 1vhrA 184 8.09e+01 1vhrA c.45.1.1 32651 1bupA 386 8.11e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1s1pA 331 8.13e+01 c.1.7.1 98350 1pn0A 665 8.17e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1omrA 201 8.19e+01 a.39.1.5 93349 1wddA 477 8.21e+01 1or0B 528 8.23e+01 1a70 97 8.23e+01 1awd d.15.4.1 37678 1a4pA 96 8.31e+01 1b4cA a.39.1.2 17176 1ik9A 213 8.36e+01 b.59.1.1,h.1.11.1 66176,66177 2g3aA 152 8.40e+01 1p0hA 318 8.48e+01 d.108.1.1 93866 1xq8A 140 8.48e+01 1qe3A 489 8.49e+01 2bce c.69.1.1 34630 1ovlA 271 8.50e+01 a.123.1.1 87455 2g19A 244 8.53e+01 1ypyA 184 8.58e+01 1mixA 206 8.58e+01 a.11.2.1,b.55.1.5 79166,79167 2ae5B 528 8.60e+01 1e8yA 966 8.61e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1gky 187 8.63e+01 1gky c.37.1.1 31839 1ex7A 186 8.71e+01 1gky c.37.1.1 59537 1jltB 122 8.73e+01 a.133.1.2 66868 1qahA 136 8.76e+01 d.79.1.1 96338 1ns5A 155 8.77e+01 c.116.1.3 80705 1qysA 106 8.79e+01 k.41.1.1 96603 2c8vA 288 8.82e+01 1d0cA 444 8.82e+01 d.174.1.1 64769 3proC 166 8.86e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1z84A 351 8.92e+01 2amxA 376 8.93e+01 1m8jA 181 8.97e+01 c.26.1.3 84875