# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 8.21e-16 1d5rA 324 4.14e-02 1d5rA b.7.1.1,c.45.1.1 23181,32697 1exrA 148 4.98e-01 1cll a.39.1.5 17299 1u00A 227 1.01e+00 1ggzA 148 2.60e+00 a.39.1.5 70176 1x0vA 354 2.77e+00 1uqtA 482 3.21e+00 c.87.1.6 99794 1di1A 300 3.24e+00 1di1A a.128.1.4 19446 1g8lA 411 3.42e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2fiyA 309 3.52e+00 1z2nX 324 3.93e+00 1h16A 759 4.06e+00 c.7.1.1 76462 1uzbA 516 4.13e+00 c.82.1.1 100220 2bjkA 516 4.45e+00 1txdA 385 5.42e+00 a.87.1.1,b.55.1.1 107422,107423 1paqA 189 5.50e+00 a.118.1.14 94413 1wu4A 396 6.42e+00 2gh1A 301 7.14e+00 1m0uA 249 7.16e+00 a.45.1.1,c.47.1.5 78359,78360 2abqA 306 7.49e+00 1gadO 330 7.97e+00 1dssG c.2.1.3,d.81.1.1 29950,39865 1ywfA 296 8.04e+00 1u24A 337 8.10e+00 1f5nA 592 8.19e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 5rubA 490 8.31e+00 1burA c.1.14.1,d.58.9.1 29382,39288 2au3A 407 8.36e+00 1euvA 221 8.44e+00 1euvA d.3.1.7 37133 1d7oA 297 8.96e+00 1enp c.2.1.2 29907 1nrwA 288 8.98e+00 c.108.1.10 86128 1w33A 181 9.46e+00 1lehA 364 9.47e+00 1bw9A c.2.1.7,c.58.1.1 30268,33916 1n62A 166 9.49e+00 a.56.1.1,d.15.4.2 80090,80091 1cr1A 296 9.97e+00 1cr1A c.37.1.11 32286 1uxtA 501 1.05e+01 c.82.1.1 108125 2b7kA 200 1.08e+01 2f3yA 148 1.08e+01 1dw0A 112 1.10e+01 1dw0A a.3.1.1 15911 1y8qB 640 1.10e+01 2g39A 497 1.13e+01 2bgxA 261 1.13e+01 1m0kA 262 1.18e+01 f.13.1.1 78344 1knyA 253 1.24e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1ki9A 192 1.27e+01 c.37.1.1 84404 1mc2A 122 1.28e+01 a.133.1.2 74622 1mxrA 375 1.29e+01 a.25.1.2 85197 1i5pA 633 1.30e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2bh7A 261 1.34e+01 1z6oA 212 1.35e+01 1wy9A 147 1.37e+01 1nepA 130 1.38e+01 b.1.18.7 80440 1byrA 155 1.45e+01 1byrA d.136.1.1 41450 1tueA 212 1.47e+01 c.37.1.20 107323 2fji1 399 1.48e+01 2fk8A 318 1.52e+01 1z5zA 271 1.54e+01 1vjkA 98 1.54e+01 d.15.3.1 108631 2gauA 232 1.54e+01 1bm9A 122 1.55e+01 1bm9A a.4.5.7 16116 1t5oA 351 1.65e+01 c.124.1.5 106459 1sxvA 172 1.70e+01 1ej2A 181 1.72e+01 1f9aA c.26.1.3 59414 1ag9A 175 1.75e+01 1rcf c.23.5.1 31178 1l5oA 356 1.75e+01 c.39.1.1 77711 1w7bA 339 1.76e+01 1ie9A 259 1.78e+01 1db1A a.123.1.1 62318 1o2dA 371 1.89e+01 e.22.1.2 86591 1ihoA 283 1.90e+01 1ihoA c.26.1.4 62390 1sfxA 109 1.93e+01 a.4.5.50 105505 1e8cA 498 1.94e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1m8jA 181 1.98e+01 c.26.1.3 84875 1f7uA 607 1.98e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1senA 164 1.99e+01 c.47.1.1 105465 1wfxA 186 2.00e+01 1qhtA 775 2.07e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1aop 497 2.12e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1p1jA 533 2.13e+01 c.2.1.3,d.81.1.3 87687,87688 1wusA 180 2.26e+01 2dg5A 366 2.29e+01 1x42A 232 2.30e+01 2cybA 323 2.32e+01 1u46A 291 2.32e+01 d.144.1.7 107656 2ccjA 205 2.33e+01 1eg3A 261 2.33e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1w53A 84 2.33e+01 a.186.1.2 109175 1clc 639 2.41e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1p5tA 127 2.44e+01 b.55.1.2 94148 1kyqA 274 2.47e+01 c.2.1.11,e.37.1.1 73281,73282 1tq4A 413 2.51e+01 c.37.1.8 107201 1xf1A 926 2.52e+01 1h9oA 112 2.54e+01 1qadA d.93.1.1 60837 1j5sA 463 2.63e+01 c.1.9.8 71580 2exrA 524 2.67e+01 1vj7A 393 2.77e+01 a.211.1.1,d.218.1.8 100801,100802 1qhlA 227 2.84e+01 1qhlA c.37.1.12 32382 2aqjA 538 2.85e+01 1pba 81 2.86e+01 1pytA d.58.3.1 39067 1vqoB 338 2.87e+01 2cwcA 303 2.90e+01 1in6A 334 2.96e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1iomA 377 2.97e+01 a.103.1.1 83698 1ppjD 241 2.98e+01 a.3.1.3,f.23.11.1 104258,104259 1yckA 175 2.99e+01 2a10A 125 3.05e+01 1uh5A 329 3.13e+01 c.2.1.2 107840 1in4A 334 3.28e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1jrrA 382 3.29e+01 e.1.1.1 63256 1dvoA 152 3.32e+01 1dvoA a.136.1.1 19623 1mai 131 3.37e+01 1mai b.55.1.1 26951 1j09A 468 3.37e+01 a.97.1.1,c.26.1.1 77025,77026 1e8yA 966 3.40e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1su8A 636 3.42e+01 e.26.1.2 98999 1fgyA 127 3.45e+01 1faoA b.55.1.1 26976 2fbhA 146 3.47e+01 1nxhA 126 3.49e+01 a.200.1.1 92300 2gdqA 382 3.50e+01 1zy9A 564 3.53e+01 1pfo 500 3.55e+01 1pfo f.9.1.1 43826 1h3fA 432 3.60e+01 c.26.1.1,d.66.1.4 76631,76632 1vquA 374 3.61e+01 1pdo 135 3.61e+01 1pdo c.54.1.1 33376 1gegA 256 3.67e+01 1ybvA c.2.1.2 29888 1na3A 91 3.74e+01 k.38.1.1 85481 1r2rA 248 3.75e+01 c.1.1.1 96875 2evaA 307 3.77e+01 1vqrA 297 3.78e+01 1w68A 390 3.79e+01 a.25.1.2 109216 2fsrA 195 3.84e+01 1z23A 163 3.85e+01 1hqsA 423 3.87e+01 1iso c.77.1.1 61154 1v7bA 185 3.87e+01 2f9dA 125 3.90e+01 1cvrA 435 3.94e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1zvdA 380 3.95e+01 1u2kA 309 4.00e+01 2af4C 333 4.06e+01 2b0tA 738 4.13e+01 2aexA 346 4.17e+01 2g38A 99 4.23e+01 1yiiA 320 4.24e+01 2gsfA 373 4.25e+01 1no1A 126 4.25e+01 a.179.1.1 85913 1rcwA 231 4.43e+01 a.132.1.4 97299 1pb1A 416 4.43e+01 c.77.1.1 88014 1m0wA 491 4.45e+01 c.30.1.4,d.142.1.6 78363,78364 1r5yA 386 4.45e+01 c.1.20.1 97134 2aefA 234 4.46e+01 1kjqA 391 4.56e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1tadA 324 4.57e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1wmdA 434 4.59e+01 b.18.1.20,c.41.1.1 109408,109409 1t1gA 364 4.61e+01 c.41.1.2 106246 1u0mA 382 4.73e+01 c.95.1.2,c.95.1.2 107557,107558 3proC 166 4.74e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1e7uA 961 4.74e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1i19A 561 4.76e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2f6hX 419 4.82e+01 2cohA 202 4.85e+01 1kvkA 395 4.86e+01 d.14.1.5,d.58.26.3 73060,73061 2c3gA 98 4.88e+01 1qstA 160 4.90e+01 1yghA d.108.1.1 40804 1huxA 270 4.91e+01 1huxA c.55.1.5 61278 1v54C 261 4.93e+01 f.25.1.1 100324 1td6A 306 5.00e+01 1r7jA 95 5.04e+01 a.4.5.49 104836 1x1tA 260 5.04e+01 1wuiL 534 5.07e+01 1ux8A 132 5.11e+01 2fm9A 215 5.12e+01 1u8fO 335 5.15e+01 1dozA 309 5.24e+01 1ak1 c.92.1.1 35592 1yydA 357 5.25e+01 2iw2A 494 5.25e+01 1swxA 209 5.26e+01 a.224.1.1 106075 1bgp 309 5.29e+01 1bgp a.93.1.1 18690 1j55A 95 5.33e+01 a.39.1.2 77078 1wwrA 171 5.34e+01 1j30A 144 5.42e+01 a.25.1.1 90806 1w6vA 141 5.43e+01 1yfuA 174 5.45e+01 1nh1A 330 5.57e+01 e.45.1.1 91871 1oflA 481 5.59e+01 b.80.1.4 103934 1wsrA 375 5.61e+01 1t46A 313 5.67e+01 d.144.1.7 106397 1p0hA 318 5.69e+01 d.108.1.1 93866 1n1bA 549 5.69e+01 a.102.4.1,a.128.1.3 79799,79800 1kid 203 5.71e+01 1derA c.8.5.1 30771 1ve0A 134 5.74e+01 2cbiA 594 5.78e+01 2f02A 323 5.79e+01 1h8eA 510 5.79e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1ubkL 534 5.87e+01 e.18.1.1 88422 1rkbA 173 5.93e+01 1g8iA 190 5.96e+01 1rec a.39.1.5 60363 1q6uA 245 5.97e+01 d.26.1.1 95998 1ktbA 405 6.00e+01 b.71.1.1,c.1.8.1 72960,72961 1yn9A 169 6.01e+01 1q8cA 151 6.02e+01 a.79.1.2 96202 1grj 158 6.03e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1sbyA 254 6.09e+01 1wbeA 209 6.18e+01 1tu1A 148 6.19e+01 d.107.1.3 107316 1aua 296 6.19e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1ve6A 582 6.23e+01 1mpgA 282 6.23e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1hf8A 289 6.26e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 2fug1 438 6.28e+01 1pinA 163 6.29e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1vqzA 341 6.29e+01 1m3sA 186 6.30e+01 c.80.1.3 78573 1roaA 122 6.33e+01 d.17.1.2 105024 1ik9A 213 6.35e+01 b.59.1.1,h.1.11.1 66176,66177 1rro 108 6.35e+01 1a75A a.39.1.4 17195 1z21A 112 6.36e+01 2he7A 283 6.37e+01 1q6hA 224 6.39e+01 d.26.1.1 95975 1y4lA 121 6.40e+01 1floA 422 6.40e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1fcdA 401 6.41e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2fmpA 335 6.41e+01 1kn1A 160 6.47e+01 a.1.1.3 77455 1vjqA 79 6.49e+01 k.43.1.1 100830 1bqcA 302 6.49e+01 1bqcA c.1.8.3 28831 1zsyA 357 6.50e+01 1bli 483 6.52e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1pea 385 6.53e+01 1pea c.93.1.1 35662 2c3mA 1231 6.57e+01 2g7sA 194 6.58e+01 1dp4A 435 6.64e+01 1dp4A c.93.1.1 35710 1sz2A 332 6.68e+01 2gmyA 153 6.71e+01 1lj8A 493 6.76e+01 a.100.1.9,c.2.1.6 90392,90393 1n5uA 585 6.76e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1ow4A 129 6.79e+01 a.39.2.1 93628 2g5cA 281 6.80e+01 1uuyA 167 6.82e+01 c.57.1.1 108059 2c8vA 288 6.83e+01 1yspA 181 6.84e+01 1kdj 102 6.85e+01 1plc b.6.1.1 22864 2ac7A 235 6.89e+01 2es4D 332 6.98e+01 1fvgA 199 6.99e+01 1fvaA d.58.28.1 39408 1wy7A 207 7.07e+01 2h79A 269 7.07e+01 1ui5A 215 7.10e+01 a.4.1.9,a.121.1.1 107856,107857 1h6kA 757 7.15e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 2d69A 430 7.27e+01 1ukfA 188 7.29e+01 d.3.1.10 99488 2bs3A 656 7.34e+01 1z84A 351 7.38e+01 2coeA 120 7.47e+01 1n35A 1267 7.47e+01 e.8.1.4 79935 1vk6A 269 7.48e+01 d.113.1.4,d.113.1.4 100851,100852 1sznA 417 7.49e+01 b.71.1.1,c.1.8.1 106162,106163 1k0dA 260 7.49e+01 a.45.1.1,c.47.1.5 67930,67931 1efyA 350 7.53e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 2hbjA 410 7.55e+01 1y5eA 169 7.62e+01 1wmwA 330 7.63e+01 1r6dA 337 7.63e+01 c.2.1.2 97148 1dcfA 136 7.69e+01 1dcfA c.23.1.2 31124 2b67A 204 7.75e+01 1jflA 228 7.77e+01 c.78.2.1,c.78.2.1 71656,71657 1e6uA 321 7.77e+01 1bsvA c.2.1.2 29805 2cfuA 658 7.79e+01 2auhB 59 7.89e+01 2b8tA 223 7.90e+01 1k04A 162 7.92e+01 a.24.14.1 67904 1josA 128 7.95e+01 d.52.7.1 84191 1tbxA 99 8.04e+01 a.4.5.48 106748 1gu2A 124 8.08e+01 a.3.1.1 76348 1ns5A 155 8.22e+01 c.116.1.3 80705 1hr6A 475 8.24e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2f1nA 262 8.27e+01 2axtB 510 8.46e+01 1p4oA 322 8.48e+01 d.144.1.7 87775 1ydiA 263 8.53e+01 2g58A 121 8.53e+01 1iugA 352 8.58e+01 c.67.1.3 90699 1qpaA 345 8.60e+01 1arv a.93.1.1 18585 1k6dA 220 8.61e+01 c.124.1.2 72082 1rh9A 373 8.61e+01 1r6oC 106 8.62e+01 1hw1A 239 8.62e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1vgjA 184 8.81e+01 2g3aA 152 8.83e+01 1h2wA 710 8.90e+01 b.69.7.1,c.69.1.4 76596,76597 1aj8A 371 8.91e+01 1aj8A a.103.1.1 18900 2hbtA 247 8.97e+01