# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 7.15e-24 1d5rA 324 3.18e-05 1d5rA b.7.1.1,c.45.1.1 23181,32697 1v7rA 186 1.08e-01 c.51.4.1 100482 2g7sA 194 3.70e-01 1tkeA 224 3.76e-01 1knyA 253 5.70e-01 1knyA a.24.16.1,d.218.1.1 75896,75897 2gupA 292 7.88e-01 2c46A 241 1.03e+00 1jyhA 157 1.34e+00 d.60.1.3 71956 1xg2B 153 1.41e+00 1u24A 337 1.74e+00 1g4wR 383 1.82e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 1u0mA 382 2.29e+00 c.95.1.2,c.95.1.2 107557,107558 2gumA 628 2.43e+00 1gt1A 159 2.54e+00 b.60.1.1 90515 2cdqA 510 2.62e+00 1senA 164 2.64e+00 c.47.1.1 105465 1z5zA 271 2.71e+00 1f0lA 535 2.84e+00 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1uqtA 482 2.85e+00 c.87.1.6 99794 1fpzA 212 2.95e+00 1fpzA c.45.1.1 59976 1m0uA 249 2.96e+00 a.45.1.1,c.47.1.5 78359,78360 1yn9A 169 3.37e+00 2cg4A 152 4.40e+00 1onrA 316 4.48e+00 1onrA c.1.10.1 29169 1guxA 218 4.73e+00 1guxA a.74.1.3 18388 1nepA 130 5.91e+00 b.1.18.7 80440 1t98A 287 6.42e+00 1gadO 330 6.48e+00 1dssG c.2.1.3,d.81.1.1 29950,39865 2b49A 287 6.53e+00 1ktbA 405 7.02e+00 b.71.1.1,c.1.8.1 72960,72961 1pea 385 7.08e+00 1pea c.93.1.1 35662 1g8lA 411 7.43e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1vhrA 184 7.99e+00 1vhrA c.45.1.1 32651 2a10A 125 8.36e+00 1vqrA 297 8.54e+00 1ne7A 289 8.60e+00 c.124.1.1 91833 1wwrA 171 8.83e+00 1txdA 385 9.64e+00 a.87.1.1,b.55.1.1 107422,107423 1vqoB 338 9.68e+00 1rkbA 173 9.93e+00 1zczA 464 1.01e+01 1f7uA 607 1.03e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1fs1B 141 1.16e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 2ivxA 257 1.20e+01 1r6dA 337 1.21e+01 c.2.1.2 97148 1z77A 200 1.25e+01 1yirA 408 1.35e+01 1p5tA 127 1.36e+01 b.55.1.2 94148 1ukfA 188 1.38e+01 d.3.1.10 99488 2g7jA 124 1.38e+01 2bbhA 269 1.38e+01 2bkxA 242 1.39e+01 1na3A 91 1.41e+01 k.38.1.1 85481 1sznA 417 1.42e+01 b.71.1.1,c.1.8.1 106162,106163 1i1rB 181 1.42e+01 1i1rB a.26.1.1 61548 2a2pA 129 1.43e+01 1w53A 84 1.44e+01 a.186.1.2 109175 1pmi 440 1.49e+01 1pmi b.82.1.3 28114 1vmeA 410 1.52e+01 c.23.5.1,d.157.1.3 108893,108894 1fcdA 401 1.54e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1x6oA 174 1.58e+01 b.34.5.2,b.40.4.5 109493,109494 1aop 497 1.60e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1dw0A 112 1.64e+01 1dw0A a.3.1.1 15911 1g31A 111 1.68e+01 1g31A b.35.1.1 24656 1zboA 210 1.69e+01 1r2rA 248 1.69e+01 c.1.1.1 96875 1o9iA 266 1.69e+01 a.25.1.3 92671 2dbbA 151 1.70e+01 2fh7A 595 1.75e+01 1lqaA 346 1.76e+01 c.1.7.1 84674 1w7bA 339 1.81e+01 1oheA 348 1.82e+01 c.45.1.1,c.45.1.1 87013,87014 2bzlA 325 1.87e+01 1u6tA 121 1.88e+01 2bnxA 386 1.89e+01 3bamA 213 1.95e+01 1bam c.52.1.3 33288 2cybA 323 2.08e+01 1byrA 155 2.09e+01 1byrA d.136.1.1 41450 1n57A 291 2.10e+01 c.23.16.2 85328 1hr6A 475 2.14e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1n2zA 245 2.21e+01 c.92.2.2 79865 1lkoA 191 2.25e+01 a.25.1.1,g.41.5.1 78063,78064 1oc2A 348 2.26e+01 c.2.1.2 92765 1r7jA 95 2.29e+01 a.4.5.49 104836 1j1bA 420 2.32e+01 d.144.1.7 90758 2d0sA 79 2.35e+01 1dcjA 81 2.37e+01 1dcjA d.68.3.3 59115 1vqoL 165 2.37e+01 1h9oA 112 2.44e+01 1qadA d.93.1.1 60837 1g7sA 594 2.47e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1ryp1 222 2.47e+01 1ryp1 1dzkA 157 2.50e+01 1obpA b.60.1.1 27096 2bsjA 133 2.52e+01 1yqtA 538 2.75e+01 1jztA 246 2.79e+01 c.104.1.1 63319 1hruA 188 2.81e+01 1hruA d.115.1.1 40926 1t92A 116 2.89e+01 1x0jA 122 2.94e+01 1td6A 306 2.96e+01 1bupA 386 2.97e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1udh 244 2.99e+01 3eugA c.18.1.1 31015 1x1eA 239 3.01e+01 1qg8A 255 3.10e+01 1qg8A c.68.1.1 34505 1nb8A 353 3.17e+01 d.3.1.9 80385 1q2yA 140 3.28e+01 d.108.1.1 95655 2cvjA 180 3.33e+01 1nznA 126 3.38e+01 a.118.8.1 92382 1gd1O 334 3.49e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1np6A 174 3.49e+01 c.37.1.10 85954 1te5A 257 3.71e+01 d.153.1.1 106795 1zavA 180 3.79e+01 3sdhA 146 3.79e+01 3sdhA a.1.1.2 14984 1oo0B 110 3.85e+01 d.58.7.1 87183 1qv9A 283 3.86e+01 c.127.1.1 96356 2c4wA 176 3.90e+01 1x9gA 200 3.91e+01 c.33.1.3 109527 1hs6A 611 3.92e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1nmeA 146 3.93e+01 c.17.1.1 85874 2dkoA 146 4.02e+01 1g3mA 294 4.08e+01 c.37.1.5 83268 2be4A 272 4.12e+01 2f2gA 221 4.16e+01 2fpoA 202 4.18e+01 1z4eA 153 4.24e+01 2a6tA 271 4.30e+01 1cxc 124 4.31e+01 1ycc a.3.1.1 15890 1fsgA 233 4.33e+01 1qk3A c.61.1.1 34029 1yfsA 465 4.45e+01 1xqaA 113 4.51e+01 1p1jA 533 4.60e+01 c.2.1.3,d.81.1.3 87687,87688 1eg3A 261 4.61e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2g39A 497 4.78e+01 1mtyG 162 4.82e+01 1mtyG a.23.3.1 16498 1su8A 636 4.87e+01 e.26.1.2 98999 1v7bA 185 4.88e+01 2es9A 115 4.93e+01 2hbtA 247 4.99e+01 1gpuA 680 5.04e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1u8fO 335 5.05e+01 1tu7A 208 5.05e+01 1uuyA 167 5.18e+01 c.57.1.1 108059 1pfo 500 5.42e+01 1pfo f.9.1.1 43826 2afbA 351 5.46e+01 1vlyA 338 5.48e+01 b.44.2.1,d.250.1.1 108871,108872 1z6oM 191 5.48e+01 1vprA 374 5.51e+01 1m7sA 484 5.59e+01 e.5.1.1 74574 5eau 548 5.68e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1h7sA 365 5.72e+01 d.14.1.3,d.122.1.2 65705,65706 2b5wA 357 5.79e+01 1x8hA 228 5.82e+01 1viaA 175 5.87e+01 c.37.1.2 100754 2b3gA 123 6.00e+01 1zx0A 236 6.02e+01 1q8iA 783 6.03e+01 c.55.3.5,e.8.1.1 96208,96209 2cwcA 303 6.03e+01 1g8kA 825 6.07e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 3cla 213 6.09e+01 3cla c.43.1.1 32610 1zk8A 183 6.15e+01 1px5A 349 6.16e+01 a.160.1.2,d.218.1.6 95277,95278 1wyzA 242 6.32e+01 2h79A 269 6.34e+01 1rlr 761 6.34e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1o8rA 94 6.42e+01 d.234.1.1 86677 2ghcX 261 6.42e+01 1kv5A 250 6.43e+01 c.1.1.1 73052 1s95A 333 6.50e+01 d.159.1.3 105375 1wa3A 205 6.51e+01 1u2mA 143 6.57e+01 f.48.1.1 107612 1hrhA 136 6.60e+01 1rthA c.55.3.1 33577 1mswD 883 6.61e+01 e.8.1.3 79427 1t64A 377 6.63e+01 c.42.1.2 106543 1khyA 148 6.63e+01 a.174.1.1 77410 1v9vA 114 6.63e+01 1i6lA 328 6.80e+01 c.26.1.1 66041 2gm5A 139 6.83e+01 1e0cA 271 6.87e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1t6cA 315 6.89e+01 c.55.1.8,c.55.1.8 106558,106559 1oafA 261 6.93e+01 a.93.1.1 86734 1z6oA 212 7.02e+01 1winA 143 7.08e+01 2choA 716 7.20e+01 2h57A 190 7.22e+01 2c3gA 98 7.24e+01 1q8cA 151 7.25e+01 a.79.1.2 96202 1obbA 480 7.29e+01 c.2.1.5,d.162.1.2 86760,86761 2b7kA 200 7.35e+01 1b0b 142 7.35e+01 2fal a.1.1.2 15010 1rypI 222 7.37e+01 d.153.1.4 41877 2c7xA 436 7.43e+01 1xtpA 254 7.48e+01 2b69A 343 7.52e+01 2bhoA 130 7.57e+01 1lmq 129 7.62e+01 3lzt d.2.1.2 36588 1prxA 224 7.64e+01 1prxA c.47.1.10 33076 1on3A 523 7.69e+01 c.14.1.4,c.14.1.4 87107,87108 1iznA 286 7.94e+01 e.43.1.1 83847 1reqA 727 8.07e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1paqA 189 8.23e+01 a.118.1.14 94413 1h4vB 421 8.24e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1w9gA 104 8.30e+01 1n8vA 112 8.33e+01 a.118.21.1 85457 1m2oA 768 8.37e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1xk5A 204 8.43e+01 1hjrA 158 8.45e+01 1hjrA c.55.3.6 33727 1k20A 310 8.45e+01 c.107.1.1 68027 2ffuA 501 8.47e+01 1pu6A 218 8.51e+01 a.96.1.5 95123 1d2vC 466 8.59e+01 1mhlC 1jflA 228 8.63e+01 c.78.2.1,c.78.2.1 71656,71657 1eyvA 156 8.64e+01 1eyvA a.79.1.1 18446 2bs3A 656 8.69e+01 2f02A 323 8.70e+01 1p0yA 444 8.72e+01 a.166.1.1,b.85.7.3 87654,87655 1pjr 724 8.77e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 2gptA 523 8.80e+01 1z8oA 404 8.80e+01 2chnA 716 8.82e+01 1d02A 202 8.83e+01 1d02A c.52.1.8 33313 2anxA 146 8.89e+01 1wqaA 455 8.97e+01