# List of top-scoring protein chains for T0386.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f6sA 201 4.39e-18 2g03A 194 8.66e-18 1te5A 257 7.61e-01 d.153.1.1 106795 1f0lA 535 3.46e+00 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1f16A 192 4.99e+00 1f16A f.1.4.1 43400 1d5rA 324 5.56e+00 1d5rA b.7.1.1,c.45.1.1 23181,32697 1hkvA 453 6.04e+00 b.49.2.3,c.1.6.1 83559,83560 2gupA 292 6.41e+00 2fpoA 202 9.45e+00 2gfoA 396 9.90e+00 1e8gA 560 1.18e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1gwz 299 1.20e+01 2shpA c.45.1.2 32685 1z2nX 324 1.55e+01 1qdlB 195 1.57e+01 1qdlB c.23.16.1 31437 1kanA 253 1.60e+01 1knyA a.24.16.1,d.218.1.1 75878,75879 1knyA 253 1.69e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2b3oA 532 1.76e+01 1p9nA 170 1.78e+01 c.37.1.10 87997 1np6A 174 1.83e+01 c.37.1.10 85954 1oazA 123 1.87e+01 c.47.1.1 92741 1qqmA 378 1.88e+01 1ba1 c.55.1.1,c.55.1.1 33391,33392 1nge 386 1.94e+01 1ba1 c.55.1.1,c.55.1.1 33409,33410 1ngd 386 1.94e+01 1ba1 c.55.1.1,c.55.1.1 33417,33418 1ba0 386 1.95e+01 1ba1 c.55.1.1,c.55.1.1 33397,33398 1qqnA 378 1.95e+01 1ba1 c.55.1.1,c.55.1.1 33393,33394 1ngf 386 1.98e+01 1ba1 c.55.1.1,c.55.1.1 33405,33406 1ats 386 1.98e+01 1ba1 c.55.1.1,c.55.1.1 33423,33424 1ngb 386 2.01e+01 1ba1 c.55.1.1,c.55.1.1 33401,33402 1hpm 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33381,33382 1ba1 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33387,33388 1ngh 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33413,33414 1ngg 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33415,33416 1bupA 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1nga 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33407,33408 1ngc 386 2.03e+01 1ba1 c.55.1.1,c.55.1.1 33411,33412 1kax 381 2.03e+01 1ba1 c.55.1.1,c.55.1.1 33389,33390 1kay 381 2.04e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1kaz 381 2.04e+01 1ba1 c.55.1.1,c.55.1.1 33383,33384 1qqoA 378 2.04e+01 1ba1 c.55.1.1,c.55.1.1 33395,33396 2bupA 381 2.10e+01 1ba1 c.55.1.1,c.55.1.1 33379,33380 1hx1A 400 2.14e+01 1ba1 c.55.1.1,c.55.1.1 61348,61349 1v7rA 186 2.20e+01 c.51.4.1 100482 1ys9A 254 2.21e+01 1bqcA 302 2.21e+01 1bqcA c.1.8.3 28831 1atr 386 2.23e+01 1ba1 c.55.1.1,c.55.1.1 33421,33422 1ynrA 80 2.38e+01 1nj4A 363 2.41e+01 b.105.1.1,e.3.1.1 80545,80546 1yuwA 554 2.51e+01 1y1xA 191 2.56e+01 1qltA 560 2.77e+01 1qltA d.58.32.1,d.145.1.1 39457,41720 1jnsA 92 2.78e+01 d.26.1.1 84185 1zivA 339 2.93e+01 1t2pA 146 2.97e+01 b.100.1.1 106283 1c4zD 154 3.12e+01 1u9aA d.20.1.1 38331 1na0A 125 3.19e+01 k.38.1.1 85479 1r5lA 262 3.29e+01 a.5.3.1,c.13.1.1 97099,97100 1oizA 278 3.35e+01 a.5.3.1,c.13.1.1 93079,93080 1ijaA 148 3.36e+01 1ijaA b.100.1.1 62484 1dznA 560 3.46e+01 1qltA d.58.32.1,d.145.1.1 39471,41734 2gk9A 401 3.47e+01 1bhy 482 3.50e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1z6fA 363 3.60e+01 1ojt 482 3.61e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1e0yA 560 3.74e+01 1qltA d.58.32.1,d.145.1.1 39467,41730 1nyeA 162 3.76e+01 d.227.1.1 92338 1vyvA 359 3.82e+01 b.34.2.1,c.37.1.1 108918,108919 1v54G 85 3.91e+01 f.23.2.1 100328 2ab1A 122 3.93e+01 1f9uA 347 4.02e+01 1bg2 c.37.1.9 59744 1qxpA 900 4.06e+01 a.39.1.8,a.39.1.8,b.14.1.1,d.3.1.3 96543,96544,96545,96546 3kar 346 4.06e+01 1bg2 c.37.1.9 32198 1f9wA 347 4.07e+01 1bg2 c.37.1.9 59746 1f9vA 347 4.07e+01 1bg2 c.37.1.9 59745 1na3A 91 4.14e+01 k.38.1.1 85481 1o8rA 94 4.22e+01 d.234.1.1 86677 2occG 84 4.26e+01 2occG f.23.2.1 43522 1f9tA 358 4.29e+01 1bg2 c.37.1.9 59743 1zbqA 327 4.35e+01 1w1mA 560 4.38e+01 d.58.32.1,d.145.1.1 109067,109068 1w1jA 560 4.39e+01 d.58.32.1,d.145.1.1 109055,109056 1ro2A 216 4.39e+01 d.264.1.2 97665 1vaoA 560 4.39e+01 1qltA d.58.32.1,d.145.1.1 39461,41724 1w1lA 560 4.39e+01 d.58.32.1,d.145.1.1 109063,109064 2cg4A 152 4.39e+01 1ni7A 155 4.72e+01 d.224.1.1 85738 2cobA 70 4.89e+01 1t2wA 145 4.95e+01 b.100.1.1 106289 2boqA 331 5.02e+01 1fprA 284 5.09e+01 2shpA c.45.1.2 59949 1t2oA 146 5.20e+01 b.100.1.1 106280 1tl2A 236 5.32e+01 1tl2A b.67.1.1 27541 1nwmX 142 5.36e+01 a.7.8.1 86301 1k6dA 220 5.65e+01 c.124.1.2 72082 2cozA 122 5.68e+01 1fpwA 190 5.86e+01 1rec a.39.1.5 17329 2cjaA 522 6.02e+01 1t2bA 397 6.11e+01 1nafA 158 6.58e+01 a.7.8.1 85487 1oxzA 186 6.58e+01 a.7.8.1 87542 1qhlA 227 6.68e+01 1qhlA c.37.1.12 32382 2f2gA 221 6.77e+01 2d2mB 142 6.81e+01 1w1kA 560 7.02e+01 d.58.32.1,d.145.1.1 109059,109060 2fo7A 136 7.06e+01 1g8lA 411 7.15e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1p1jA 533 7.20e+01 c.2.1.3,d.81.1.3 87687,87688 1ywtA 248 7.21e+01 1sxjE 354 7.33e+01 a.80.1.1,c.37.1.20 106089,106090 1cwvA 492 7.46e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1kf6B 243 7.51e+01 a.1.2.1,d.15.4.2 72397,72398 1nf3C 128 7.58e+01 b.36.1.1 85596 1b85A 351 7.59e+01 1arv a.93.1.1 18581 1dtp 190 7.71e+01 1ddt d.166.1.1 42248 2gm8A 221 7.82e+01 1b89A 449 7.83e+01 1b89A a.118.1.3 19138 1yslA 402 7.97e+01 1ve0A 134 7.99e+01 1x9eA 383 8.27e+01 2b69A 343 8.28e+01 1b80A 351 8.30e+01 1arv a.93.1.1 18579 1qjbA 245 8.35e+01 1qjaA a.118.7.1 19202 2cpfA 98 8.43e+01 2c1nA 258 8.50e+01 2dpmA 284 8.68e+01 2dpmA c.66.1.28 34246 1o3xA 140 8.85e+01 a.7.8.1 86617 1u46A 291 8.89e+01 d.144.1.7 107656 1ud3A 480 8.94e+01 b.71.1.1,c.1.8.1 88471,88472 1u54A 291 8.99e+01 d.144.1.7 107675 1jx9B 557 8.99e+01