# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f6sA 201 1.14e-20 2g03A 194 3.10e-20 1d5rA 324 1.11e-02 1d5rA b.7.1.1,c.45.1.1 23181,32697 1knyA 253 9.29e-02 1knyA a.24.16.1,d.218.1.1 75896,75897 2astA 159 1.04e-01 2b3oA 532 1.06e-01 1uqtA 482 4.57e-01 c.87.1.6 99794 1u0mA 382 5.19e-01 c.95.1.2,c.95.1.2 107557,107558 1f0lA 535 6.69e-01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1r2rA 248 9.43e-01 c.1.1.1 96875 1tph1 247 1.46e+00 1amk 2gupA 292 1.65e+00 1u24A 337 2.05e+00 2abk 211 2.28e+00 2abk a.96.1.1 18743 2cdqA 510 2.58e+00 1g4wR 383 2.61e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 1z5zA 271 2.68e+00 1nh1A 330 2.95e+00 e.45.1.1 91871 1vmeA 410 3.05e+00 c.23.5.1,d.157.1.3 108893,108894 1i9sA 210 3.12e+00 1i9sA c.45.1.1 62099 2a10A 125 3.72e+00 2fpoA 202 3.87e+00 1vhrA 184 4.12e+00 1vhrA c.45.1.1 32651 2c46A 241 5.99e+00 1zboA 210 6.52e+00 1o94A 729 6.76e+00 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1na3A 91 7.01e+00 k.38.1.1 85481 2fh7A 595 7.15e+00 1v7rA 186 8.02e+00 c.51.4.1 100482 1larA 575 8.19e+00 1larA c.45.1.2,c.45.1.2 32693,32694 1djqA 729 8.29e+00 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1zk8A 183 9.02e+00 1g8lA 411 9.14e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2d2mB 142 9.21e+00 1w7bA 339 9.56e+00 1djnA 729 9.67e+00 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1olrA 224 9.95e+00 b.29.1.11 93330 2tmdA 729 1.00e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1rkbA 173 1.01e+01 1sctB 151 1.13e+01 3sdhA a.1.1.2 15003 1yn9A 169 1.20e+01 1gt1A 159 1.23e+01 b.60.1.1 90515 1tv9A 335 1.23e+01 2gfoA 396 1.24e+01 1j1nA 492 1.24e+01 c.94.1.1 83978 1fpzA 212 1.26e+01 1fpzA c.45.1.1 59976 1zczA 464 1.27e+01 1txdA 385 1.29e+01 a.87.1.1,b.55.1.1 107422,107423 1hn2A 159 1.29e+01 b.60.1.1 65890 2avpA 70 1.30e+01 1mkp 144 1.30e+01 1vhrA c.45.1.1 32654 1q44A 326 1.35e+01 c.37.1.5 95779 1pea 385 1.46e+01 1pea c.93.1.1 35662 1fs1B 141 1.52e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1tkeA 224 1.62e+01 1yqtA 538 1.64e+01 1sxjE 354 1.68e+01 a.80.1.1,c.37.1.20 106089,106090 2fmpA 335 1.78e+01 1td6A 306 1.87e+01 1bpyA 335 1.88e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 2cg4A 152 1.94e+01 1b71A 191 2.00e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 2a2pA 129 2.03e+01 2shpA 525 2.05e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 3tgl 269 2.06e+01 3tgl c.69.1.17 34733 1gadO 330 2.07e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1b1cA 181 2.15e+01 1amoA c.23.5.2 31212 1fmjA 351 2.18e+01 c.37.1.5 59879 2a7mA 250 2.20e+01 1yuwA 554 2.24e+01 1hr6A 475 2.30e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2bs3A 656 2.33e+01 1in6A 334 2.40e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1fukA 165 2.41e+01 1fukA c.37.1.19 32409 1oheA 348 2.44e+01 c.45.1.1,c.45.1.1 87013,87014 1bvyF 191 2.46e+01 1bvyF c.23.5.1 31207 1qf6A 642 2.48e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1bupA 386 2.49e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2ivxA 257 2.52e+01 1tpfA 250 2.73e+01 1amk c.1.1.1 28467 1qqyA 130 2.73e+01 3lzt d.2.1.2 36586 3sdhA 146 2.74e+01 3sdhA a.1.1.2 14984 1lkoA 191 2.74e+01 a.25.1.1,g.41.5.1 78063,78064 1w33A 181 2.74e+01 3bamA 213 2.80e+01 1bam c.52.1.3 33288 2g7sA 194 2.82e+01 2bikB 313 2.88e+01 1wz7A 111 2.92e+01 1xngA 268 2.94e+01 2d2mA 140 2.95e+01 2b3yA 888 2.96e+01 2bnxA 386 3.00e+01 1kay 381 3.02e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1q2yA 140 3.14e+01 d.108.1.1 95655 2ewcA 126 3.17e+01 1z6oM 191 3.20e+01 2hbtA 247 3.24e+01 1x8hA 228 3.30e+01 1nepA 130 3.31e+01 b.1.18.7 80440 1xwsA 313 3.36e+01 2b49A 287 3.38e+01 1bjwA 382 3.41e+01 1bjwA c.67.1.1 34349 1z2cB 383 3.41e+01 1j2zA 270 3.43e+01 b.81.1.1 90805 1ktbA 405 3.43e+01 b.71.1.1,c.1.8.1 72960,72961 1rliA 184 3.56e+01 c.23.5.6 97647 1gypA 358 3.57e+01 1dssG c.2.1.3,d.81.1.1 30004,39919 1v61A 132 3.57e+01 b.55.1.1 108389 1eazA 125 3.58e+01 b.55.1.1 70113 1zavA 180 3.61e+01 1x1eA 239 3.70e+01 1j98A 157 3.71e+01 1j98A d.185.1.2 62755 2b7kA 200 3.78e+01 2dpmA 284 3.83e+01 2dpmA c.66.1.28 34246 1iuqA 367 3.90e+01 c.112.1.1 90703 1w9gA 104 3.90e+01 1g3mA 294 3.90e+01 c.37.1.5 83268 1vplA 256 4.01e+01 1bg2 325 4.06e+01 1bg2 c.37.1.9 32189 2bfgA 503 4.18e+01 1vflA 356 4.18e+01 1pm3A 78 4.32e+01 b.41.1.2 94889 2bbhA 269 4.33e+01 1xg2B 153 4.33e+01 1obpA 159 4.44e+01 1obpA b.60.1.1 27092 1knvA 293 4.50e+01 c.52.1.7 68707 2bzgA 232 4.52e+01 2b4rO 345 4.53e+01 1ia8A 289 4.59e+01 1ia8A d.144.1.7 62112 1x9gA 200 4.60e+01 c.33.1.3 109527 1b5pA 385 4.63e+01 c.67.1.1 90403 1z77A 200 4.64e+01 2b0jA 358 4.74e+01 1o8rA 94 4.77e+01 d.234.1.1 86677 1jj2K 164 4.89e+01 1ffkJ c.12.1.1 63096 1s72L 165 4.91e+01 c.12.1.1 105331 1qqeA 292 5.01e+01 1qqeA a.118.8.1 19210 1p0yA 444 5.16e+01 a.166.1.1,b.85.7.3 87654,87655 2ac4A 309 5.17e+01 1k30A 368 5.19e+01 c.112.1.1 68067 1w53A 84 5.19e+01 a.186.1.2 109175 1ytw 306 5.21e+01 1ytw c.45.1.2 32689 2feaA 236 5.25e+01 1nsf 273 5.32e+01 1d2nA c.37.1.20 32429 1jmsA 381 5.37e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1r7jA 95 5.42e+01 a.4.5.49 104836 1vlyA 338 5.49e+01 b.44.2.1,d.250.1.1 108871,108872 2c3gA 98 5.57e+01 1t2wA 145 5.59e+01 b.100.1.1 106289 1k3tA 359 5.60e+01 c.2.1.3,d.81.1.1 72022,72023 1kdgA 546 5.61e+01 c.3.1.2,d.16.1.1 77337,77338 1n1bA 549 5.77e+01 a.102.4.1,a.128.1.3 79799,79800 1yirA 408 5.78e+01 2b5wA 357 5.88e+01 2g19A 244 5.89e+01 2bzlA 325 5.93e+01 1kepA 348 6.05e+01 c.2.1.2 68536 1y5eA 169 6.09e+01 2afbA 351 6.10e+01 1p5hA 428 6.17e+01 c.123.1.1 87802 1u79A 129 6.20e+01 d.26.1.1 107714 1qg8A 255 6.36e+01 1qg8A c.68.1.1 34505 1dzkA 157 6.43e+01 1obpA b.60.1.1 27096 1ad3A 452 6.43e+01 1ad3A c.82.1.1 35335 1t98A 287 6.43e+01 1uasA 362 6.45e+01 b.71.1.1,c.1.8.1 88388,88389 1d2nA 272 6.45e+01 1d2nA c.37.1.20 32428 1lcyA 325 6.48e+01 b.36.1.4,b.47.1.1 73834,73835 1cwvA 492 6.55e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1qlaA 656 6.64e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 1r6dA 337 6.74e+01 c.2.1.2 97148 1cxc 124 6.77e+01 1ycc a.3.1.1 15890 1ddgA 374 6.79e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1dozA 309 6.87e+01 1ak1 c.92.1.1 35592 1a5t 334 6.90e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 2gw2A 198 6.91e+01 1n8vA 112 6.95e+01 a.118.21.1 85457 1m0uA 249 6.98e+01 a.45.1.1,c.47.1.5 78359,78360 1lz1 130 6.99e+01 3lzt d.2.1.2 36415 1vqoL 165 7.00e+01 1jsf 130 7.00e+01 3lzt d.2.1.2 36410 1ryt 190 7.03e+01 1ryt a.25.1.1,g.41.5.1 16646,45245 1jjyA 636 7.03e+01 1jjyA 1j99A 293 7.05e+01 c.37.1.5 71618 1pu6A 218 7.08e+01 a.96.1.5 95123 2b69A 343 7.17e+01 1n3gA 113 7.19e+01 d.204.1.1 79962 1kv5A 250 7.20e+01 c.1.1.1 73052 2cvjA 180 7.24e+01 1senA 164 7.27e+01 c.47.1.1 105465 1t64A 377 7.30e+01 c.42.1.2 106543 1su8A 636 7.55e+01 e.26.1.2 98999 1rm4A 337 7.59e+01 c.2.1.3,d.81.1.1 105000,105001 2h57A 190 7.72e+01 1qhlA 227 7.79e+01 1qhlA c.37.1.12 32382 1nznA 126 7.88e+01 a.118.8.1 92382 1m3iA 471 7.91e+01 f.9.1.1 91178 1u8fO 335 8.00e+01 1vi0A 206 8.07e+01 a.4.1.9,a.121.1.1 100720,100721 1ri7A 171 8.38e+01 a.4.5.32,d.58.4.2 97504,97505 1azwA 313 8.42e+01 1qtrA c.69.1.7 34658 1n2zA 245 8.45e+01 c.92.2.2 79865 1wryA 121 8.56e+01 2h03A 291 8.56e+01 1j79A 347 8.59e+01 1j79A c.1.9.4 62675 1oo0B 110 8.59e+01 d.58.7.1 87183 1jkvA 266 8.77e+01 a.25.1.3 71719 1gd1O 334 8.83e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1ylmA 144 8.97e+01