(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0385 Rv2844, Mycobacterium tuberculosis, 162 res
    • gi|13882684|gb|AAK47236.1|_1:162 hypothetical protein MT2910 [Mycobacterium tuberculosis CDC1551]
    • gi|31794021|ref|NP_856514.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97]
    • gi|31619615|emb|CAD95054.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97]
    • gi|2078015|emb|CAB08446.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv]
    • gi|15609981|ref|NP_217360.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv]
    • gi|15842385|ref|NP_337422.1| hypothetical protein MT2910 [Mycobacterium tuberculosis CDC1551]
    • gi|76783319|ref|ZP_00770511.1| hypothetical protein MtubF_01002930 [Mycobacterium tuberculosis F11]
    • gi|81253091|ref|ZP_00877654.1| hypothetical protein MtubC_01002712 [Mycobacterium tuberculosis C]
    • gi|17429380|emb|CAD16067.1|_40:203 putative ferritin/ribonucleotide reductase-like; protein [Ralstonia solanacearum]
    • gi|17547079|ref|NP_520481.1| hypothetical protein RSc2360 [Ralstonia solanacearum GMI1000]
    • gi|83746732|ref|ZP_00943781.1|_42:205 Hypothetical Protein RRSL_03646 [Ralstonia solanacearum UW551]
    • gi|83726685|gb|EAP73814.1| Hypothetical Protein RRSL_03646 [Ralstonia solanacearum UW551]
    • gi|94310591|ref|YP_583801.1|_43:206 hypothetical protein Rmet_1649 [Ralstonia metallidurans CH34]
    • gi|93354443|gb|ABF08532.1| conserved hypothetical protein [Ralstonia metallidurans CH34]
    • gi|72117817|gb|AAZ60080.1|_41:204 conserved hypothetical protein [Ralstonia eutropha JMP134]
    • gi|73540404|ref|YP_294924.1| hypothetical protein Reut_A0698 [Ralstonia eutropha JMP134]
    • gi|33568423|emb|CAE32335.1|_28:189 putative exported protein [Bordetella bronchiseptica RB50]
    • gi|33600823|ref|NP_888383.1| hypothetical protein BB1838 [Bordetella bronchiseptica RB50]
    • gi|33566432|emb|CAE37685.1|_28:189 putative exported protein [Bordetella parapertussis]
    • gi|33596981|ref|NP_884624.1| hypothetical protein BPP2388 [Bordetella parapertussis 12822]
    • gi|71847371|gb|AAZ46867.1|_31:192 conserved hypothetical protein [Dechloromonas aromatica RCB]
    • gi|71907750|ref|YP_285337.1| hypothetical protein Daro_2125 [Dechloromonas aromatica RCB]
    • gi|33563409|emb|CAE42288.1|_28:189 putative exported protein [Bordetella pertussis Tohama I]
    • gi|33593034|ref|NP_880678.1| hypothetical protein BP2008 [Bordetella pertussis Tohama I]
    • gi|91789245|ref|YP_550197.1|_29:190 hypothetical protein Bpro_3389 [Polaromonas sp. JS666]
    • gi|91698470|gb|ABE45299.1| conserved hypothetical protein [Polaromonas sp. JS666]
    • gi|56314941|emb|CAI09586.1|_31:192 conserved hypothetical protein,putatively exported via twin-arginine system [Azoarcus sp. EbN1]
    • gi|56478898|ref|YP_160487.1| conserved hypothetical protein, putatively exported via twin-arginine system [Azoarcus sp. EbN1]
    • gi|41409010|ref|NP_961846.1|_1:148 hypothetical protein MAP2912 [Mycobacterium avium subsp. paratuberculosis K-10]
    • gi|41397369|gb|AAS05229.1| hypothetical protein MAP_2912 [Mycobacterium avium subsp. paratuberculosis K-10]
    • gi|13093374|emb|CAC30512.1|_1:165 conserved hypothetical protein [Mycobacterium leprae]
    • gi|4455673|emb|CAB36565.1| hypothetical protein MLCB596.09c [Mycobacterium leprae]
    • gi|15827822|ref|NP_302085.1| hypothetical protein ML1561 [Mycobacterium leprae TN]
    • gi|89902893|ref|YP_525364.1|_29:188 hypothetical protein Rfer_4137 [Rhodoferax ferrireducens T118]
    • gi|89347630|gb|ABD71833.1| conserved hypothetical protein [Rhodoferax ferrireducens DSM 15236]
    • gi|108804501|ref|YP_644438.1|_30:195 Twin-arginine translocation pathway signal [Rubrobacter xylanophilus DSM 9941]
    • gi|108765744|gb|ABG04626.1| Twin-arginine translocation pathway signal [Rubrobacter xylanophilus DSM 9941]
    • gi|89341890|ref|ZP_01194131.1|_1:161 conserved hypothetical alanine rich protein [Mycobacterium flavescens PYR-GCK]
    • gi|89317928|gb|EAS09426.1| conserved hypothetical alanine rich protein [Mycobacterium flavescens PYR-GCK]
    • gi|46121187|ref|XP_385148.1|_11:177 hypothetical protein FG04972.1 [Gibberella zeae PH-1]
    • gi|42551996|gb|EAA74839.1| hypothetical protein FG04972.1 [Gibberella zeae PH-1]
    • gi|90205349|ref|ZP_01207989.1|_172:334 hypothetical protein MvanDRAFT_1273 [Mycobacterium vanbaalenii PYR-1]
    • gi|90195673|gb|EAS22438.1| hypothetical protein MvanDRAFT_1273 [Mycobacterium vanbaalenii PYR-1]
    • gi|108804502|ref|YP_644439.1|_43:203 Twin-arginine translocation pathway signal [Rubrobacter xylanophilus DSM 9941]
    • gi|108765745|gb|ABG04627.1| Twin-arginine translocation pathway signal [Rubrobacter xylanophilus DSM 9941]
    • gi|90306036|gb|EAS35667.1|_23:178 hypothetical protein CIMG_01021 [Coccidioides immitis RS]
    • gi|88178991|gb|EAQ86459.1|_52:203 hypothetical protein CHGG_07712 [Chaetomium globosum CBS 148.51]
    • gi|85103631|ref|XP_961562.1|_53:204 hypothetical protein [Neurospora crassa OR74A]
    • gi|18376313|emb|CAD21425.1| related to stress response protein rds1p [Neurospora crassa]
    • gi|28923109|gb|EAA32326.1| predicted protein [Neurospora crassa]
    • gi|86143184|ref|ZP_01061586.1|_38:214 hypothetical protein MED217_08380 [Flavobacterium sp. MED217]
    • gi|85830089|gb|EAQ48549.1| hypothetical protein MED217_08380 [Flavobacterium sp. MED217]
    • gi|48854953|ref|ZP_00309113.1|_42:203 hypothetical protein Chut02002010 [Cytophaga hutchinsonii]
    • gi|48854954|ref|ZP_00309114.1|_34:203 hypothetical protein Chut02002011 [Cytophaga hutchinsonii]
    • gi|108799044|ref|YP_639241.1|_1:156 conserved hypothetical alanine rich protein [Mycobacterium sp. MCS]
    • gi|108769463|gb|ABG08185.1| conserved hypothetical alanine rich protein [Mycobacterium sp. MCS]
    • gi|92915719|ref|ZP_01284341.1| conserved hypothetical alanine rich protein [Mycobacterium sp. KMS]
    • gi|92907210|ref|ZP_01275990.1| conserved hypothetical alanine rich protein [Mycobacterium sp. JLS]
    • gi|92439917|gb|EAS97762.1| conserved hypothetical alanine rich protein [Mycobacterium sp. KMS]
    • gi|92435510|gb|EAS94841.1| conserved hypothetical alanine rich protein [Mycobacterium sp. JLS]
    • gi|86609345|ref|YP_478107.1|_36:209 Tat (twin-arginine translocation) pathway signal sequence domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
    • gi|86557887|gb|ABD02844.1| Tat (twin-arginine translocation) pathway signal sequence domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
    • gi|90590646|ref|ZP_01246293.1|_47:214 Twin-arginine translocation pathway signal [Flavobacterium johnsoniae UW101]
    • gi|90433848|gb|EAS59210.1| Twin-arginine translocation pathway signal [Flavobacterium johnsoniae UW101]
    • gi|50417629|ref|XP_457712.1|_11:179 hypothetical protein DEHA0C00814g [Debaryomyces hansenii CBS767]
    • gi|49653378|emb|CAG85738.1| unnamed protein product [Debaryomyces hansenii CBS767]
    • gi|89069203|ref|ZP_01156570.1|_13:171 hypothetical protein OG2516_17605 [Oceanicola granulosus HTCC2516]
    • gi|89045201|gb|EAR51268.1| hypothetical protein OG2516_17605 [Oceanicola granulosus HTCC2516]
    • gi|90590647|ref|ZP_01246294.1|_45:204 hypothetical protein FjohDRAFT_2635 [Flavobacterium johnsoniae UW101]
    • gi|90433849|gb|EAS59211.1| hypothetical protein FjohDRAFT_2635 [Flavobacterium johnsoniae UW101]
    • gi|86143185|ref|ZP_01061587.1|_35:208 hypothetical protein MED217_08385 [Flavobacterium sp. MED217]
    • gi|85830090|gb|EAQ48550.1| hypothetical protein MED217_08385 [Flavobacterium sp. MED217]
    • gi|71022959|ref|XP_761709.1|_12:181 hypothetical protein UM05562.1 [Ustilago maydis 521]
    • gi|46101095|gb|EAK86328.1| hypothetical protein UM05562.1 [Ustilago maydis 521]
    • gi|35215003|dbj|BAC92369.1|_4:168 glr4428 [Gloeobacter violaceus PCC 7421]
    • gi|37523997|ref|NP_927374.1| hypothetical protein glr4428 [Gloeobacter violaceus PCC 7421]
    • gi|35210741|dbj|BAC88122.1|_17:191 gll0181 [Gloeobacter violaceus PCC 7421]
    • gi|37519750|ref|NP_923127.1| hypothetical protein gll0181 [Gloeobacter violaceus PCC 7421]
    • gi|55773569|dbj|BAD72009.1|_18:181 conserved hypothetical protein [Thermus thermophilus HB8]
    • gi|55978396|ref|YP_145452.1| hypothetical protein TTHB213 [Thermus thermophilus HB8]
    • gi|46255240|ref|YP_006152.1|_18:181 hypothetical protein TT_P0169 [Thermus thermophilus HB27]
    • gi|46198089|gb|AAS82499.1| hypothetical conserved protein [Thermus thermophilus HB27]
    • gi|58263160|ref|XP_568990.1|_9:192 hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
    • gi|57223640|gb|AAW41683.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
    • gi|50260192|gb|EAL22853.1| hypothetical protein CNBB0740 [Cryptococcus neoformans var. neoformans B-3501A]
    • gi|46125265|ref|XP_387186.1|_49:202 hypothetical protein FG07010.1 [Gibberella zeae PH-1]
    • gi|42553697|gb|EAA76540.1| hypothetical protein FG07010.1 [Gibberella zeae PH-1]
    • gi|71004408|ref|XP_756870.1|_71:235 hypothetical protein UM00723.1 [Ustilago maydis 521]
    • gi|46095879|gb|EAK81112.1| hypothetical protein UM00723.1 [Ustilago maydis 521]
    • gi|46255241|ref|YP_006153.1|_25:218 dessication-related protein pcc13-62 precursor [Thermus thermophilus HB27]
    • gi|46198090|gb|AAS82500.1| dessication-related protein pcc13-62 precursor [Thermus thermophilus HB27]
    • gi|21224050|ref|NP_629829.1|_1:141 hypothetical protein SCO5701 [Streptomyces coelicolor A3(2)]
    • gi|7801273|emb|CAB91137.1| hypothetical protein SC5H4.25c [Streptomyces coelicolor A3(2)]
    • gi|29829098|ref|NP_823732.1|_1:153 hypothetical protein SAV2556 [Streptomyces avermitilis MA-4680]
    • gi|29606204|dbj|BAC70267.1| hypothetical protein [Streptomyces avermitilis MA-4680]
    • gi|71914909|gb|AAZ54811.1|_1:151 conserved hypothetical protein [Thermobifida fusca YX]
    • gi|72161177|ref|YP_288834.1| hypothetical protein Tfu_0773 [Thermobifida fusca YX]
    • gi|94495652|ref|ZP_01302232.1|_36:242 hypothetical protein SKA58_06370 [Sphingomonas sp. SKA58]
    • gi|94425040|gb|EAT10061.1| hypothetical protein SKA58_06370 [Sphingomonas sp. SKA58]
    • gi|54017550|dbj|BAD58920.1|_2:141 hypothetical protein [Nocardia farcinica IFM 10152]
    • gi|54026042|ref|YP_120284.1| hypothetical protein nfa40710 [Nocardia farcinica IFM 10152]
    • gi|88941036|ref|ZP_01146463.1|_16:175 bacterioferritin [Acidiphilium cryptum JF-5]
    • gi|88920205|gb|EAR39329.1| bacterioferritin [Acidiphilium cryptum JF-5]
    • gi|71368363|ref|ZP_00658864.1|_2:139 Conserved hypothetical protein [Nocardioides sp. JS614]
    • gi|71155931|gb|EAO06357.1| Conserved hypothetical protein [Nocardioides sp. JS614]
    • gi|46255237|ref|YP_006149.1|_8:167 hypothetical protein TT_P0166 [Thermus thermophilus HB27]
    • gi|46198086|gb|AAS82496.1| hypothetical protein TT_P0166 [Thermus thermophilus HB27]
    • gi|90418640|ref|ZP_01226551.1|_6:143 hypothetical protein SI859A1_00544 [Aurantimonas sp. SI85-9A1]
    • gi|90336720|gb|EAS50425.1| hypothetical protein SI859A1_00544 [Aurantimonas sp. SI85-9A1]
    • gi|86742248|ref|YP_482648.1|_1:173 hypothetical protein Francci3_3567 [Frankia sp. CcI3]
    • gi|86569110|gb|ABD12919.1| conserved hypothetical protein [Frankia sp. CcI3]
                                   10                      20          
                                   |                       |          
   1 ...M...T...S...SE..P...AH.G...ATP.K.R....SP..S.E....G.S.AD....NAA
   2 ...M...T...S...SE..P...AH.G...ATP.K.R....SP..S.E....G.S.AD....NAA
   3 s..Laa.V...S...LG..R...SM.P...AWA.Q.T....QS..G.S....V.K.DD....INI
   4 s..Laa.V...S...LG..Q...SM.P...AWA.Q.A....QS..G.S....V.K.DD....INI
   5 slaV...M...S...LG..E...AM.P...AWG.Q.T....HS..T.S....T.K.DD....INI
   6 slaV...L...S...LG..E...SM.P...AWA.Q.T....HS..G.S....T.K.DD....INI
   7 saaA...V...A...LL..A...GK.D...ALA.A.Q....AG..S.G....S.S.QD....VQI
   8 saaA...V...A...LL..A...GK.D...ARA.A.Q....AG..S.G....S.S.QD....VQI
   9 s..Gaa.V...A...LL..T...GQ.D...ALA.A.K....SA..D.G....V.E.SD....LRI
  10 saaA...V...A...LL..A...GK.D...ALA.A.Q....AG..S.G....S.S.QD....VQI
  11 s..Gaa.I...A...LL..A...GN.D...ALA.A.K....AG..G.S....K.A.GD....VQI
  12 avaL...L...A...GR..P...AL.A...AQA.D.T....RQ..G.D....P.A.AD....ARI
  13 ...-...-...-...--..-...--.-...---.-.-....MT..S.G....K.D.AD....NAA
  14 ...M...T...S...IE..P...SA.PtpvATP.K.R....TP..V.S....Q.D.SD....NAG
  15 s..Gaa.V...A...LL..A...GN.D...ALA.A.K....AG..G.G....K.A.AD....IQI
  16 ...LalaG...A...GA..A...AG.T...AVL.A.A....PA..S.A....Q.S.GD....VDI
  17 ...M...T...S...PT..P...AP.Tda.ALP.T.R....--..-.P....E.D.AA....AGA
  18 ...T...LaaaS...LV..A...AA.P...AIQ.K.R....AD..A.I....N.D.G-....-VI
  19 ghaG...R...C...GR..F...TM.T...APD.Q.G....MP..SrP....D.D.AA....DGA
  20 ggfG...V...A...VR..Y...AH.G...QEQ.Q.A....YT..T.Y....Q.DlTD....AQI
  21 avpL...E...A...RN..T...TS.I...APN.T.N....RS..T.T....R.V.TD....VDV
  22 ...-...-...-...--..-...--.-...---.-.-....--..-.L....G.L.ND....VDI
  23 ...-...-...-...--..-...--.-...---.-.-....--..-.-....G.L.TD....VDI
  24 kaaL...A...A...VP..F...GLaT...ASN.K.A....MA..Q.S....T.G.DV....VGV
  25 kaaL...T...S...LP..F...AL.F...AMP.R.I....VQ..A.S....T.Q.ANtqsvTDT
  26 saiL...I...S...CK..KkddDD.P...APS.D.M....GV..N.L....G.S.GD....TGI
  27 ...M...T...S...VE..P...TP.P...ARP.A.-....--..-.-....D.S.AD....-GA
  28 ...L...L...A...GV..G...GA.I...GLR.T.L....PGaaQ.S....N.T.AD....IAI
  29 e..D...N...M...ED..T...SL.P...GVR.N.G....VF..D.L....G.S.GD....FGV
  30 ...-...-...S...GL..Maa.ST.I...AAP.A.N....IA..K.R....D.D.ID....VDI
  31 ...A...M...A...QT..A...SG.P...TVSaD.G....VV..D.L....G.G.GD....TGV
  32 ...P...F...G...LSa.L...TG.K...AFA.K.D....IT..A.T....P.A.TP....IGA
  33 sslL...L...A...SC..S...DD.D...DSG.N.M....MG..G.GtfdlG.T.GD....VGV
  34 a..A...Taa.A...AV..A...AA.P...AQK.R.A....AA..G.Q....A.D.ID....VVI
  35 ...-...-...-...--..-...-M.A...TFD.A.I....LA..T.D....K.Q.ND....LEI
  36 ...L...LagaA...GT..L...SL.M...AGT.R.L....AF..G.Q....D.K.GD....LAI
  37 tatG...L...S...AA..F...AG.S...LLD.RaL....AA..H.G....G.P.SD....ADI
  38 tatG...L...S...AA..F...AG.S...LLD.RaL....AA..H.G....G.P.SD....ADI
  39 t..A...V...A...VMgaL...AI.Q...ATP.I.K....RD..A.Y....T.P.TD....IDI
  40 ...-...-...-...--..-...--.-...---.-.-....--..-.A....G.L.DD....PSI
  41 aatT...F...S...PS..P...TG.G...ILP.P.T....GT..G.T....T.F.ND....TQI
  42 ...L...G...AgavLG..G...AV.T...ACT.T.T....AQ..T.P....N.L.-D....VAI
  43 ...-...-...-...--..-...--.-...---.-.-....MG..K.A....G.N.GR....LDA
  44 ...-...M...S...AS..T...GT.T...GTP.K.-....AE..S.T....E.S.AE....LRA
  45 ...-...-...-...--..-...-M.T...GTL.D.P....TP..S.G....EaG.AA....TAA
  46 a..G...Vag.S...MQ..M...AM.T...IAP.A.H....AQ..A.T....A.V.SD....ADV
  47 ...-...-...-...--..-...--.-...---.-.-....--..-.M....T.D.AE....RQA
  48 lrdV...R...A...IS..A...RMhG...ALL.D.E....ES..E.G....A.D.PA....LVL
  49 ...-...-...-...--..-...--.-...---.-.-....--..-.-....-.M.AE....LDA
  50 rrrF...L...S...LLa.L...GG.V...ATL.P.R....AK..G.V....P.S.QE....-DV
  51 ...-...-...-...--..-...--.-...---.-.-....TT..V.G....T.E.TD....IKS
  52 ...M...T...A...DT..P...SG.DpasATP.T.EstaaTE..H.P....D.P.AG....VAA


          30            40                                     50      
          |             |                                      |      
   1 LC.DALAVEHAT..IY..GY.....GI....V...S.....A.....LSP.....P..GVNFL.V
   2 LC.DALAVEHAT..IY..GY.....GI....V...S.....A.....LSP.....P..GVNFL.V
   3 LN.TALGLEYQA..IA..AYqv...GA....E...S.....G.....LLQ.....K..PVLAT.A
   4 LN.VALGLEYQA..IA..AYqv...GA....E...S.....G.....LLQ.....K..PVLDT.A
   5 LN.TALGLEYQA..IA..AYqv...GA....E...S.....G.....LLQ.....K..PVLDT.A
   6 LN.VALGLEYQA..IA..AYqv...GA....E...S.....G.....LLQ.....K..PVLDT.A
   7 LN.TALAAELEA..IA..AYql...GA....E...S.....K.....LLD.....K..PVLAL.A
   8 LN.TALAAELEA..IA..AYql...GA....E...S.....K.....LLD.....K..PVLAL.A
   9 LN.TALGAELEA..IA..AYql...GA....E...S.....G.....LLQ.....K..PVLDL.A
  10 LN.TALAAELEA..IA..AY.....QLda..E...S.....K.....LLD.....K..PVLAL.A
  11 LN.TAIGAELEA..IA..AYql...GA....E...S.....K.....LLT.....K..PVLDL.A
  12 LN.TALAAEHEA..IA..AYql...GA....G...S.....G.....LLR.....A..PMRDL.A
  13 LC.DALAIEHST..IY..GY.....GI....V...S.....A.....MSP.....P..SVNDM.V
  14 LS.EALVVEHST..IY..GY.....GI....V...L.....A.....LSP.....P..NANSL.V
  15 LN.TAIGAELEA..IA..AYql...GA....E...S.....K.....LLS.....K..PVLDL.A
  16 AN.FALTLEYLEaeFY..AR.....AV....D...S.....G.....VLS.....G..DVVG-.I
  17 LF.DALAAEHAT..IY..GY.....GV....V...S.....A.....HST.....P..ELNYL.V
  18 LN.YALTLEHLEnqFY..LQ.....GL....-...S.....N.....FTEkd9ydS..TFYGN.I
  19 LF.DAIATEHAT..IY..GY.....GL....V...S.....A.....HST.....P..DVNYL.V
  20 LQ.FAYLLELLEgtFY..DQ.....GV....Q...S.....G.....LFS.....G..NELSQ.I
  21 LQ.FALTLEHLEsvFY..RQ.....GLsrftR...A.....D.....FIR.....A..GFPAS.F
  22 LQ.FALTLEWLEatFY..QQ.....GF....A...Qfp9alG.....LEQ.....R..EIDAL.I
  23 LQ.FALTLEHLEntFY..RE.....GF....-...A.....K.....FPA.....A..DFTALgL
  24 LN.LALTLEYLEdeFY..AM.....AL....D...S.....G.....VLS.....N..NAKAEaI
  25 LN.YALTLEYLEeaFY..VQ.....GL....Ak..S.....G.....LID.....S..ADM-T.I
  26 LN.YAYALEQLEaaFY..IQvvan.SK....F...T.....T.....IFS.....A..SEQQL.-
  27 LY.DAIATEHAA..IY..GY.....GL....V...S.....A.....HST.....P..EVNWL.V
  28 LN.AAIDLEQQA..IW..AY.....KT....A...A.....G.....KLSntevgK..IVLEV.A
  29 LT.YAYALEQLE..AD..FY.....TK....VvnaS.....N.....FNTvf...N..DTERQ.V
  30 LQ.YALTLEHLEnaFYkkAL.....ST....W...Svd...D.....FTK.....A..NFSSD.F
  31 LN.YAYALEQLEa.AY..YT.....QV....V...D.....N.....PYS.....GmtRTERD.I
  32 LQ.FALTLEYLEneFY..AM.....AL....D...S.....G.....VIPase..N..GGRDLkV
  33 LN.YAYALEQLE..AA..FYt....NV....V...N.....Gsf...YAS.....A..SADEKaI
  34 LN.YALTLEHLEnaFY..RD.....SLatydA...G.....A.....FRA.....A..GYPEW.V
  35 LN.NALYFEHQG..IW..AY.....DF....A...A.....G.....KLSntdvgK..AVLAL.A
  36 LQ.AAHDLESQA..IW..AY.....GA....A...A.....G.....KLSktdvgK..TVLEL.A
  37 LQ.LALTAEYLA..VD..AYtk...SL....F...G.....G.....F-Q.....G..LVKDY.L
  38 LQ.LALTAEYLAadAY..TR.....SL....F...G.....G.....F-Q.....G..LVKDY.L
  39 LQ.YALTLEHLEk.IL..PDtp6fsTT....L...S.....N.....FYSc13adA..GFPAW.V
  40 LQ.FALTLEHLEsaFY..RE.....SFlt..I...S.....Dae6piGLE.....G..QTLDD.V
  41 LQ.YALTLEHLEaeFY..NQ.....SLsklsT...S.....D.....FEN.....A..GYNAS.V
  42 LN.FALNLEYLEglFYlaAT.....GR....I...S.....E.....LNQv23ltG..DLLDL.A
  43 LQ.AALAAEHAA..VY..GY.....GV....V...G.....G.....RIA.....E..DRRAE.A
  44 LQ.AALGAEHAA..VY..GY.....GV....V...G.....G.....KIG.....Q..ARRAD.A
  45 LR.DALLAEHAA..VY..GY.....SF....A...A.....A.....HTD.....A..DLRSL.C
  46 LN.FALNLEYLEaqFY..AYa18sqGA....V...S.....G.....GRQ.....V..NFSDQ.I
  47 LL.DALRAEYAA..VY..AY.....GV....I...A.....A.....YAS.....P..ERAGL.I
  48 LQ.SALTAEILC..VW..RY.....TM....M...Svsla.G.....LKQ.....P..RIGAE.F
  49 LQ.IALAAEHAA..VY..VY.....GA....L...G.....G.....RTSrsat.P..ELFAS.V
  50 LA.LALAAEELAreVY..RR.....AV....A...A.....R.....PFR.....G..PWAAY.L
  51 LVrDLIILEHDA..IA..AY.....ETc...I...E.....N.....LSD.....K..SLATQ.V
  52 LV.TMLTATHAA..VY..ATaaag.GA....V...Apl...G.....PAA.....A..QAREL.A


                    60                   70          80                
                    |                    |           |                
   1 ...AD.A...L....K.....Q.....HR.HRRDDVIVMLS.ARGV.TA.....P.....I.AA.
   2 ...AD.A...L....K.....Q.....HR.HRRDDVIVMLS.ARGV.TA.....P.....I.AA.
   3 ...VK.F...Q....G.....H.....HK.AHAQVLSGTVS.KLGG.TP.....V.....M.EK.
   4 ...VK.F...Q....G.....H.....HK.AHAQVLAGTVS.KMGG.TP.....V.....M.AK.
   5 ...VK.F...Q....T.....H.....HK.AHADVLANTVM.KLGG.TP.....Vkt...R.KA.
   6 ...VK.F...Q....N.....H.....HK.AHAQVLAGTVS.KLGG.SP.....V.....M.AKk
   7 ...LT.F...Q....G.....H.....HK.EHADVLGKTVE.KLGG.RP.....V.....A.AK.
   8 ...LT.F...Q....G.....H.....HK.EHADVLGKTVE.KLGG.QP.....V.....A.AK.
   9 ...MT.F...Q....G.....H.....HK.EHADLLGSTIM.KLGG.KP.....V.....T.AR.
  10 ...LT.F...Q....G.....H.....HK.EHADVLGKTVE.KLGG.QP.....V.....A.AK.
  11 ...VT.F...Q....G.....H.....HK.AHVALLSGTVE.KLGG.KP.....V.....I.AK.
  12 ...LQ.F...Q....G.....H.....HK.AHVDLLAQTVT.KLGG.KP.....A.....E.SR.
  13 ...VE.A...L....E.....Q.....HR.QRRDDVIAMLT.ARKV.TA.....P.....V.AA.
  14 ...VD.A...L....I.....Q.....HR.QRRDDIIVMLT.ARRV.SP.....P.....V.AA.
  15 ...LT.F...Q....G.....H.....HK.EHVALLSGTVA.KLGG.KA.....A.....V.AK.
  16 ...VQ.N...L....A.....D.....HEqQHVDAIVGLLQ.QAGA.EP.....V.....-.EK.
  17 ...SA.A...I....A.....E.....HR.ARREAAIALCE.QQGV.DP.....A.....V.PE.
  18 ...KK.V...S....S.....D.....ES.AHVDFLTKGLK.AAGV.TP.....V.....-.EK.
  19 ...SE.A...M....A.....E.....HR.ARREAAIALLA.EQGA.EA.....P.....L.PA.
  20 ...-T.A...I....R.....D.....HEmAHADAIAGVLG.QLGA.EV.....P.....-.AA.
  21 ...FN.Q...LqfvaR.....D.....EA.SHVVFLQRALT.GLGV.RP.....V.....-.SA.
  22 ...-K.I...G....K.....T.....EE.EHVILLQSAIA.QAGV.QP.....V.....Q.P-.
  23 ...SEsQ...I....K.....Dlq7siEE.EHVILLQGAIA.GAGA.KP.....V.....-.QE.
  24 ...YM.Q...I....S.....K.....HEsQHVDFLTAAIE.GAGA.DP.....V.....-.AK.
  25 ...FN.Q...I....K.....K.....HEsAHVVFLKNVL-.---G.SA.....A.....N.PS.
  26 ...LK.D...I....K.....A.....HEiVHRDFLKAALS.----.TS.....A.....I.QD.
  27 ...SA.S...I....A.....E.....HR.ERREAAIALLE.QRQV.AA.....P.....L.PA.
  28 ...TK.N...L....K.....D.....HE.QHRDLLAGAVR.QLGG.IP.....S.....R.AR.
  29 ...LT.D...L....Y.....H.....HEvIHRDFFKAALT.GALP.DP.....Ssql..L.PS.
  30 ...YS.Q...L....Kyiah.D.....EE.AHVQYLEAGLK.AVGA.KP.....V.....-.ET.
  31 ...LA.D...L....R.....D.....HEiAHRETFRVAL-.---G.EN.....R.....I.PD.
  32 ...FQ.Q...I....A.....A.....HEsDHVSFLIAGLG.GSMS.AN.....F.....V.PK.
  33 ...LL.D...L....Y.....N.....HEvNHREFFKAAIGaNVPM.EQ.....Q.....LtAD.
  34 ...RQ.RfveI....G.....G.....HEkAHVDFLTKAL-.---G.DQ.....A.....T.KE.
  35 ...LE.N...Q....A.....D.....HK.QHRAVLSAAIR.DLGG.TP.....V.....Q.PE.
  36 ...LR.N...Q....A.....D.....HK.SHRAALADAIK.SLGA.TP.....A.....P.AK.
  37 ...EA.A...L....T.....Q.....EE.AHVKALRDTLS.ALGV.KP.....V.....-.EK.
  38 ...EV.A...L....S.....Q.....EE.AHVKALRDTLS.ALGV.KP.....V.....-.EK.
  39 rnrFE.Q...I....A.....A.....HEaSHVAVLSDAL-.--GA.DA.....T.....K.P-.
  40 ...KA.I...G....K.....T.....EA.AHVVLLQSALT.AAGF.AP.....V.....-.QE.
  41 ...RN.Q...I....Ysigr.D.....EA.SHVSLLTEAL-.---G.DQ.....A.....V.PA.
  42 ...DE.I...A....D.....D.....EK.AHVLFLRQALG.SQAVsRP.....V.....I.DLy
  43 ...RT.A...Y....D.....A.....HR.ARRDALAREVR.DLGG.EP.....V.....A.AA.
  44 ...RA.A...Y....D.....A.....HR.ARRDELARSVR.DLGG.TP.....Q.....A.AA.
  45 ...LS.H...L....E.....K.....HR.AWRDTLHSALV.ARDA.VP.....P.....G.GE.
  46 ...VA.Q...Y....AreiaaD.....EL.AHVKFLRAQLG.NSAVaQPaidigV.....G.PN.
  47 ...AE.H...T....A.....A.....HR.ARRDATADALR.AAGA.DV.....P.....S.PD.
  48 ...QE.Q...A....N.....D.....ER.RHMVAIAQRIR.ELGG.TP.....D.....F.SP.
  49 ...VR.A...Y....D.....A.....HR.ARRDRLTATIL.DEGA.EP.....V.....A.AE.
  50 ...EA.A...L....A.....Q.....EE.EHARRLREAL-.--GR.QP.....A.....L.--.
  51 ...AA.F...R....K.....D.....HQ.QHLDVLHEMAR.ELSF.DP.....Pts8qvL.TT.
  52 ...RL.S...C....L.....A.....HQ.ALRDDLITAIR.ARGG.DA.....P.....P.AL.


                   90                100          110        120       
                   |                  |            |          |       
   1 .A..GYQ.....L.P.M.....Q.V..SSAADAARLAVR.M..ENDGATAWRA.VVEHAE.TA.D
   2 .A..GYQ.....L.P.M.....Q.V..SSAADAARLAVR.M..ENDGATAWRA.VVEHAE.TA.D
   3 .KvaEYN.....F.P.V.....SqL..KTQADVLRFAAG.L..EKGATSAYLG.VLPNFY.TR.D
   4 .KtaEYN.....F.P.V.....SqL..KTQADVLRFAAG.L..EKGATSAYLG.VIPNFY.TR.D
   5 .S..EYN.....F.PaA.....D.L..KTQADVLRFAAG.L..EKGATAAYLG.VLPSFH.NR.E
   6 pS..EYS.....F.P.T.....GqL..KTQADVLRFAAG.L..EKGATAAYLG.VLPNFY.NR.D
   7 .R..NYA.....F.P.T.....SqL..KSQADVLRFAAK.L..EQGAVSAYLG.AVPLFA.NR.D
   8 .R..NYA.....F.P.T.....SqL..KSQADVLRFAAK.L..EQGAVSAYLG.AVPLFA.NR.D
   9 .S..KYS.....F.P.L.....EtL..KTQVDVLRFAAG.L..EKGAVSAYLG.AIPVFG.NR.D
  10 .R..SYA.....F.P.T.....SqL..KSQADVLRFAAK.L..EQGAVSAYLG.AVPLFA.NR.D
  11 .T..KYN.....F.P.V.....DqL..KTELDVLKFAAQ.L..EQGAVSAYLG.AVPLFA.NR.D
  12 .Q..KYD.....F.P.V.....AtL..KAEADVLRFASG.L..EQGAVSAYLG.AVPLFA.NP.D
  13 .A..GYQ.....L.P.L.....V.V..GSPADAARLAAR.M..ENDGAGAWRV.VAEHAE.TG.D
  14 .S..GYQ.....L.P.M.....L.V..GSAADAARLAVR.M..ENDGATAWRA.VAEHAE.TA.D
  15 .A..KYN.....F.P.V.....DqL..KAELDVLKFAAS.L..EQGAVSAYLG.AVPLFG.NH.D
  16 .P..QFT.....F.P.A.....DaF..SSQDSILNLANT.F..EPVGVGAYLG.AAPLIQ.SP.D
  17 .A..GYQ.....M.P.F.....E.V..DTPADATNLAVQ.M..EEDAAEAWRA.VVEQAT.DP.G
  18 .C..SYS.....F.-.-.....G.V..TDVKSFLATASV.L..EGVGVSAYLG.AAADIM.SK.T
  19 .A..GYQ.....L.P.M.....E.V..DTPAEAVDLAVR.M..EEDAAVAWRA.VVEQAA.DQ.A
  20 .P..NFT.....Y.P.Q.....NaF..GDRNAFLELANT.F..EPVGIGAYQG.AAPALD.SK.D
  21 .C..RYN.....F.P.-.....-.F..TDVRSFVGLASV.L..EGIGVSAYLG.GAPLIS.NK.G
  22 .C..TYN.....F.-.-.....G.F..TDAAGMVATAAV.L..ENVGVSAYLG.AASLIS.DT.S
  23 .C..KYN.....F.-.Q.....N.V..TSAAAMVATAAV.L..ENVGVSAYLG.AAQLVT.DP.G
  24 .P..SFD.....F.T.Vg13agQ.A..TAYAQLLALAQA.F..EDTGVRAYKGqAANLMG.SA.G
  25 .P..AFD.....F.G.T.....A.F..DSYANFLATAQA.L..EDTGVRAYKGqAGNLIT.NK.V
  26 .L..EVN.....F.SsI.....D.F..GNRASVLGTAKA.F..EDLGVSAYNG.AGQLIS.NT.A
  27 .A..GYQ.....V.P.M.....R.V..DDPRDAAKLAVR.M..EEDGAAAWRA.VVEQAT.GT.E
  28 .D..SYD.....L.S.Tyi7egN.L..DSDANIAKLALA.L..EFDAALAYND.AFVQLS.NK.D
  29 .L..AFS.....YgS.L.....N.F..NSRTEVLATAKA.L..EDTGVAAYNG.AGRLIK.TA.D
  30 .C..TYT.....F.P.M.....Q.-..-SAEDFVALAAT.I..EGVGVSAYLG.ASPMVT.SK.Q
  31 .L..QVD.....F.SaV.....D.F..SSRQSVLTTART.F..EDLGVAAYNG.GGAAIQ.SP.D
  32 .P..TFD.....F.T.VggafdP.F..GDYPTFLALAQA.F..EDTGVRAYKGqAANLMS.TP.D
  33 .L..EFD.....F.SsV.....D.F..GNRDSVLGTARV.L..EDTGVSAYNG.AGQYIQ.TA.V
  34 .C..TYN.....F.-.-.....G.V..TDVNTFIATAAL.L..EGIGESAYLG.AAQNIT.NP.G
  35 .P..SYD.....L.S.Syl7egN.L..DSDVNIAKLALA.V..ETDAAIAYVT.EAAKLK.IP.S
  36 .D..SYD.....L.S.Ayl7egG.L..DSDANIAKLALA.L..EIDAALAYQS.AFGKLK.TP.A
  37 .P..SFV.....Y.P.V.....E.FlpRNQLAILRLLNA.L..EDAFVGAYLG.ALPLIQ.SK.D
  38 .P..SFV.....Y.P.V.....E.FlpRNQLAILRLLNA.L..EDAFVGAYLG.ALPLIQ.SK.D
  39 .C..EYS.....F.P.-.....-.Y..TDAKSFTALAQV.I..ENVGVSAYLG.AAGFIM.DK.T
  40 .C..KYD.....F.K.G.....A.T..ADPAAMVATAAI.L..ESVGVSAYLG.AAPLLT.SP.A
  41 .C..TYN.....F.S.A.....-.V..TDVASFLTTARV.L..EGVGVSAYLG.AAQNIS.NS.S
  42 .N..SFNaiqsgF.N.-.....P.F..NDPVSFFVGAFV.F..EDVGVTAYNG.AAPLIT.DKqN
  43 .A..GYA.....L.P.F.....S.V..PDSAAAVRLAAE.L..EDRLAGVYSD.LVRAAE.GG.G
  44 .A..GYA.....L.P.F.....A.V..PDATAAVRLAAE.L..EERVAGVYSD.LVR-AG.TG.A
  45 .D..AYQ.....L.P.-.....E.H..TGPEELRSFAAG.L..EETTAQAYLE.LAAVPD.-A.G
  46 .S..AFS.....A.A.Ar13fdP.Y..ASDENFLLGAFI.F..EDVGVTAYKG.AAPLIT.NE.T
  47 .A..AYG.....V.P.F.....P.V..QDPVAAARLAET.V..ETDATVAWRA.VVEQGD.SE.A
  48 .H..GLE.....T.R.F.....GeF..GTRADLAGLVEQnLaaEREVIGLYRR.MIDHFE.PH.D
  49 .P..AYE.....L.P.-.....R.L..DTPAQVDRAALA.V..ERACAATYAY.LVEH-T.VG.E
  50 .-..RFR.....L.P.E.....V.F..QSPILLLRLLES.L..EEAFVGAYLG.ALPLLE.GE.A
  51 .G..KVA.....L.-.A.....G.L..MGDATILKAMKT.N..EDDTVAAYRR.AADHGDaVP.K
  52 .P..AYR.....L.P.V.....A.P..EGIGAALALLAR.I..EDACAMAAHD.AVAVL-.VG.D


            130         140          150                       160     
             |           |            |                         |     
   1 ....DRVFAS..TALTESAVMATRWNR..VLG.A.W..PI...TAA..F..P...G...G...DE
   2 ....DRVFAS..TALTESAVMATRWNR..VLG.A.W..PI...TAA..F..P...G...G...DE
   3 ....LTKAAA..SILGDEAMHWAILLS..VLG.E.D..PV...PVA..F..V...G...-...--
   4 ....LTKAAA..SILGDEAMHWAILLS..VLG.E.D..PV...PVA..F..V...G...-...--
   5 ....LAKSAG..SILGDEAMHWAILLS..VLG.E.D..PV...PGA..F..V...G...-...--
   6 ....LTKAAG..SILGDEAMHWAVLLH..ALG.D.D..PV...PGA..F..V...G...-...--
   7 ....LSKAAA..SILGDEAMHWAVLRQ..ALG.E.P..PV...PSA..F..V...S...-...--
   8 ....LSKAAA..SILGDEAIHWAVLRQ..ALG.E.P..PV...PSA..F..V...S...-...--
   9 ....LAKAAG..SILGDEAMHWAILRN..AVG.D.V..PV...PGA..F..V...S...-...--
  10 ....LSKAAA..SILGDEAMHWAVLRQ..ALG.E.P..PV...PSA..F..V...S...-...--
  11 ....LSKAAA..SILGDEAMHWAILRQ..AIG.E.A..PV...PSA..F..V...S...-...--
  12 ....LAKAAA..SILGDEAMHWAILRQ..ALG.E.D..PV...PSA..F..V...S...-...--
  13 ....DRAFAA..TALVQSAVMAARWNR..VLG.A.W..PI...TTS..F..P...G...G...ND
  14 ....DRTFAA..MALAQSAVMAARWNK..MLG.A.W..PI...TTT..F..P...G...S...NE
  15 ....LAKAAA..SILGDEAMHWAILRQ..AIG.E.V..PV...PSA..F..M...S...-...--
  16 ....ILAAAG..SIAGVEGEHVVTIRN..VLG.L.L..PAa..NEA..F..PqalS...R...EE
  17 ....VRAFGV..TALTECAVTAAQWRA..VRG.D.T..TV...TVA..F..P...G...G...SE
  18 ....YLTAAG..SILTVEARHSSYIRA..GLK.Q.V..PF...PQA..F..D...A...PltyNE
  19 ....VRAFGV..TALTECALTAARWRA..VRG.D.S..TV...TVA..F..P...G...G...SE
  20 ....ILASAI..SIHNSECQHWNAIKI..LRGvQ.P..PN...NVA..F..-...-...E...EA
  21 ....FLGAAG..AILAAEGVHQSLFRN..SLN.L.I..A-...---..-..-...-...-...--
  22 ....ILTTAG..SILTIEARHQTFVRA..ASR.G.I..PV...PQA..FdtPl..S...P...KQ
  23 ....ILTTAG..SILTVEARHQTFIRA..ASG.V.V..AV...PQA..FdtPl..S...P...KQ
  24 ....VLTAAL..QIHSVEARHASEIRR..LRG.L.E..GW...IT-..-..-...G...N...ER
  25 ....ALTAAL..QIHSVEARHASEVRR..LRM.L.N..GW...IG-..-..V...G...Ea..GA
  26 nglvYLGLAG..KIVSVEARHAAAIRD..LLN.-.-..PK...SAD..F..S...G...D...DV
  27 ....DRTFGL..TALTESAVAAARWTQ..IAG.T.D..PV...TVA..F..P...G...G...NE
  28 ....LVAAAS..TIGPNEVAHATAIRA..VFH.S.Ld.PS...ILV..V..P...A...P...FV
  29 ....YLLLAG..KIVSVEARHAAAIRS..LIN.-.-..PN...SKD..F..A...G...D...DI
  30 ....YLTAAA..SILATEALHQSAARN..AVG.E.V..PM...ANP..F..-...G...T...PM
  31 ....ILVLAG..KIVSVEARHAATIRT..LLN.-.-..PG...SAD..F..A...G...D...DV
  32 ....LLTAAL..QIHSVEARHASEVRR..LRG.L.K..G-...---..-..-...-...-...--
  33 ....YLTLAG..KIVSVEARHAAAIRS..IIN.G.S..AD...YTA..F..A...G...D...DI
  34 ....TLTAAG..SILTVESRHSGWVSSsvLKG.DgF..PR...DTS..T..P...L...N...FN
  35 ....LVMAAA..GIGSVESIHAARIRA..AFN.S.L..GIe..MPV..V..P...SaimS...AE
  36 ....LQAAAS..SILPAEAGHATAIRA..VFH.GlM..PT...VQE..V..P...A...A...FL
  37 ....VLKAAG..AILGNEAAHRATVRA..SRI.L.L..G-...DQE..L..P...G...P...RS
  38 ....VLKAAG..AILGNEAAHRATVRA..SRI.L.L..G-...DQE..L..P...G...P...RS
  39 ....YLTVAG..SILTTEARHQAWIAS..AVN.K.Qn.PW...SGP..YdtPl..Gl..S...DV
  40 ....ILGVAG..SILTVEARHQTAIRV..FSK.A.IavPQ...PLD..T..Pl..G...P...RA
  41 ....VLETAG..SILVVEGQHQTYLIA..QTN.E.G..G-...-NV..I..P...G...A...FS
  42 ....VLAPAA..GILAAEAYHAGAIRR..HLI.E.I..-R...TQT..V..P...G...T...GL
  43 ....-RTSAA..GALREAAVRAVRWRG..GSV.A.F..PG...LAE..R..V...G...-...--
  44 ....RRRSAA..EALREAAVRAVRWS-..--G.E.-..--...SVA..F..P...G...L...AE
  45 ....LRDLAG..RALGEATLRMLALGG..QLS.A.F..P-...--G..F..P...G...G...EL
  46 ....YLEAAA..GILAVEAYHAAIVRT..TLY.G.K..GI...DTPalR..S...S...A...DK
  47 ....TRRLGV..EALTEAALRLAAWQA..ILG.-.T..P-...SPA..L..P...G...T...-V
  48 ....PVTALMltNILEEESEHATDMQD..LLSiE.T..--...---..-..-...-...-...--
  49 ....QRRSAV..GALNEAAVRELVFR-..---.G.T..P-...-EM..F..P...G...R...DE
  50 ....LR-LAG..AILGVEAGHRVLVRQ..ARL.E.LqdPLl..RPP..F..V...A...N...DR
  51 ....SKAFFA..SALADEERHRAWMDS..TA-.-.-..--...---..-..-...-...-...--
  52 ....VRALAL..DALTGTAVRAQRARI..AAG.-.M..PLaaaSRA..L..P...G...T...--


           
          
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