# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjxA 157 1.98e-03 a.25.1.1 100837 1r03A 182 4.67e-02 a.25.1.1 104675 1nfvA 179 5.91e-02 a.25.1.1 85642 2dchX 216 4.21e-01 1za0A 275 7.56e-01 2ff4A 388 1.10e+00 2gyqA 175 1.11e+00 1svdA 473 1.51e+00 1z6oM 191 1.54e+00 1x6mA 196 1.78e+00 1oq9A 363 1.79e+00 a.25.1.2 87257 1z0sA 278 2.84e+00 1lngA 87 3.01e+00 d.201.1.1 74045 1o9rA 162 3.03e+00 a.25.1.1 86706 2fkzA 155 3.42e+00 1ve3A 227 3.69e+00 1g3mA 294 4.02e+00 c.37.1.5 83268 1rcwA 231 4.02e+00 a.132.1.4 97299 1suwA 249 4.43e+00 e.52.1.1 106027 1zb1A 392 4.88e+00 1v2dA 381 4.96e+00 c.67.1.1 108281 1wzlA 585 5.75e+00 1bgc 174 6.05e+00 1bgc a.26.1.1 16822 1y2mA 716 8.03e+00 1pa7A 130 8.07e+00 a.40.1.1 94410 1wl8A 189 8.49e+00 1l0wA 580 8.58e+00 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1f5nA 592 8.67e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 2b8wA 328 8.78e+00 1ignA 246 9.27e+00 1ignA a.4.1.6,a.4.1.6 16048,16049 1jigA 146 9.48e+00 a.25.1.1 71685 4ubpC 570 9.76e+00 1ubpC b.92.1.1,c.1.9.2 28431,29053 1wouA 123 9.82e+00 c.47.1.16 109471 1rtwA 220 9.99e+00 a.132.1.3 97823 1tjoA 182 1.02e+01 1j77A 209 1.24e+01 1j77A a.132.1.2 62674 1inp 400 1.31e+01 1inp e.7.1.1 42972 1r6fA 310 1.37e+01 e.46.1.1 97149 1mrzA 293 1.44e+01 b.43.5.1,c.26.1.3 91452,91453 1w68A 390 1.51e+01 a.25.1.2 109216 1qsaA 618 1.51e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1qw9A 502 1.51e+01 b.71.1.2,c.1.8.3 96466,96467 1b5pA 385 1.55e+01 c.67.1.1 90403 1ri5A 298 1.56e+01 c.66.1.34 97502 1ywqA 200 1.60e+01 1ss9A 311 1.61e+01 c.68.1.4 105978 2fnaA 357 1.63e+01 1o1yA 239 1.69e+01 c.23.16.1 86554 1wm1A 317 1.76e+01 c.69.1.7 109405 1vlgA 176 1.79e+01 a.25.1.1 108816 1w5fA 353 1.80e+01 1qmhA 347 1.81e+01 1qmhA c.47.2.1,d.68.2.1 33082,39568 1xmzA 241 1.85e+01 1eu8A 409 1.87e+01 1eu8A c.94.1.1 59502 1ga8A 311 1.92e+01 1ga8A c.68.1.4 34516 1ustA 93 1.95e+01 a.4.5.13 99884 1uddA 226 1.98e+01 a.132.1.3 107776 2c1vA 338 2.06e+01 1xqaA 113 2.08e+01 1k0dA 260 2.09e+01 a.45.1.1,c.47.1.5 67930,67931 1kkoA 413 2.11e+01 c.1.11.2,d.54.1.1 68675,68676 1lkoA 191 2.11e+01 a.25.1.1,g.41.5.1 78063,78064 1l1sA 113 2.22e+01 c.114.1.1 73484 1iujA 106 2.30e+01 d.58.4.5 90701 2a2mA 258 2.34e+01 1zklA 353 2.39e+01 1rl0A 255 2.41e+01 1j0hA 588 2.44e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1d3cA 686 2.62e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2gefA 217 2.62e+01 1rtqA 299 2.80e+01 c.56.5.4 97819 1oyjA 231 2.80e+01 a.45.1.1,c.47.1.5 87597,87598 1jmkC 230 2.87e+01 c.69.1.22 71747 1zvnA 99 2.94e+01 1u6tA 121 2.99e+01 1gxqA 106 3.10e+01 a.4.6.1 70721 1mp9A 198 3.11e+01 d.129.1.1,d.129.1.1 91385,91386 2d13A 227 3.16e+01 1b6g 310 3.22e+01 1b6g c.69.1.8 34661 1q8yA 373 3.22e+01 d.144.1.7 96234 1poiA 317 3.30e+01 1poiA c.124.1.2 34153 1b5l 172 3.42e+01 1b5l a.26.1.3 16900 1b24A 188 3.52e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1eumA 165 3.55e+01 1eumA a.25.1.1 59507 1d5rA 324 3.65e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1oc2A 348 3.72e+01 c.2.1.2 92765 1gkmA 509 3.76e+01 a.127.1.2 70228 2go3A 267 3.76e+01 1hf2A 210 3.77e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1ct9A 553 3.82e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1yovA 537 3.86e+01 2awiA 317 3.87e+01 1f9vA 347 3.90e+01 1bg2 c.37.1.9 59745 1mxgA 435 4.09e+01 b.71.1.1,c.1.8.1 85193,85194 1b00A 127 4.26e+01 3chy c.23.1.1 31122 2bkkA 264 4.27e+01 2bhoA 130 4.29e+01 2bbsA 290 4.46e+01 1qxoA 388 4.64e+01 d.258.1.1 96539 1p7gA 222 4.65e+01 a.2.11.1,d.44.1.1 94223,94224 1w2iA 91 4.71e+01 d.58.10.1 109127 1umnA 165 4.75e+01 a.25.1.1 99607 1ea5A 537 4.79e+01 2bce c.69.1.1 34592 1wu7A 434 4.79e+01 1izmA 184 4.79e+01 a.199.1.1 90725 1jetA 517 4.85e+01 1jevA c.94.1.1 35718 1sz7A 200 4.88e+01 1pueE 89 4.91e+01 1awcA a.4.5.21 16165 1qr0A 228 5.03e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1xtzA 264 5.06e+01 1p42A 270 5.06e+01 d.14.1.7,d.14.1.7 87754,87755 1q35A 320 5.10e+01 c.94.1.1 95661 2chgA 226 5.10e+01 1dqpA 230 5.16e+01 1dqnA c.61.1.1 34069 1dpjA 329 5.22e+01 1smrA b.50.1.2 26828 2b4aA 138 5.29e+01 2b7aA 293 5.32e+01 1f6vA 91 5.33e+01 1f6vA a.49.1.1 17791 1vb3A 428 5.38e+01 1xfjA 261 5.45e+01 d.194.1.2 109585 1n97A 389 5.46e+01 a.104.1.1 80335 1otkA 249 5.52e+01 a.25.1.2 93521 1y4tA 322 5.66e+01 1cfzA 162 5.69e+01 1cfzA c.56.1.1 33754 1hs7A 97 5.71e+01 1hs7A a.47.2.1 61236 1cznA 169 5.79e+01 1rcf c.23.5.1 31181 1pbwA 216 5.79e+01 1pbwA a.116.1.1 19103 1a8l 226 5.80e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2c7pA 327 5.81e+01 2ahqA 76 5.83e+01 1fkqA 124 5.85e+01 3lzt d.2.1.2 36601 1h4vB 421 5.92e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1xqwA 293 5.94e+01 1mwvA 714 5.95e+01 a.93.1.3,a.93.1.3 85161,85162 1r0dA 206 5.97e+01 a.216.1.1 104715 2f4mB 61 5.97e+01 1wznA 252 6.14e+01 1jg1A 235 6.24e+01 c.66.1.7 66661 1yuzA 202 6.32e+01 1jfmA 174 6.41e+01 d.19.1.1 66640 1j1qA 261 6.45e+01 d.165.1.1 90768 1c7gA 456 6.49e+01 c.67.1.2 90415 1w7lA 422 6.52e+01 c.67.1.1 109226 1ockA 412 6.60e+01 c.117.1.1 86802 1xt8A 292 6.72e+01 2al3A 90 6.76e+01 1yljA 263 6.76e+01 1oboA 169 6.79e+01 c.23.5.1 86776 1vhuA 211 6.82e+01 c.50.1.2 100703 1zs9A 261 6.88e+01 1w7jA 795 6.91e+01 1evlA 401 6.97e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1jbeA 128 6.97e+01 3chy c.23.1.1 62845 1regX 122 7.00e+01 1regX d.58.27.1 39406 1ztcA 221 7.05e+01 1j1jA 240 7.05e+01 a.118.16.1 90762 5csmA 256 7.17e+01 5csmA a.130.1.2 19494 1tqjA 230 7.25e+01 c.1.2.2 107228 1wtaA 275 7.35e+01 1z7aA 308 7.36e+01 1bn7A 294 7.49e+01 1bn6A c.69.1.8 34677 1jo0A 98 7.51e+01 d.68.4.1 77140 1dozA 309 7.58e+01 1ak1 c.92.1.1 35592 1zpyA 95 7.69e+01 1vjyA 303 7.73e+01 d.144.1.7 108633 2bsjA 133 7.78e+01 1wduA 245 7.82e+01 d.151.1.1 109286 1l8aA 886 7.87e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2etsA 128 7.89e+01 1z5hA 780 7.95e+01 1gk9B 557 8.03e+01 1sazA 381 8.04e+01 1yqzA 438 8.04e+01 1o66A 275 8.14e+01 c.1.12.8 92547 1y2kA 349 8.16e+01 1te2A 226 8.19e+01 c.108.1.6 106792 1wr2A 238 8.28e+01 1fs1B 141 8.38e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1rw6A 210 8.38e+01 a.47.4.1 105113 1dqaA 467 8.40e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1k0wA 231 8.47e+01 c.74.1.1 77220 1ytlA 174 8.58e+01 1ej6D 418 8.66e+01 i.7.1.1 45970 1ln4A 104 8.74e+01 d.68.4.1 74043 1qmyA 167 8.90e+01 1qmyA d.3.1.2 37094