# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bcfA 158 1.84e-03 1bcfA a.25.1.1 16648 1nfvA 179 2.14e-03 a.25.1.1 85642 1vjxA 157 3.40e-03 a.25.1.1 100837 1r03A 182 7.90e-02 a.25.1.1 104675 2fha 183 1.01e-01 2fha a.25.1.1 16674 2fkzA 155 1.46e-01 2gyqA 175 4.02e-01 1z6oM 191 4.05e-01 2dchX 216 4.97e-01 1bgc 174 7.82e-01 1bgc a.26.1.1 16822 1dat 174 1.29e+00 2fha a.25.1.1 16677 1mojA 182 1.49e+00 a.25.1.1 91367 1tjoA 182 1.55e+00 1ss9A 311 1.63e+00 c.68.1.4 105978 1ga8A 311 1.76e+00 1ga8A c.68.1.4 34516 1f5nA 592 2.05e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 1vlgA 176 2.12e+00 a.25.1.1 108816 1x6mA 196 2.24e+00 1o9rA 162 2.29e+00 a.25.1.1 86706 1v2dA 381 2.47e+00 c.67.1.1 108281 1h96A 182 3.02e+00 2fha a.25.1.1 60811 1rcd 173 3.11e+00 2fha a.25.1.1 16687 1rcwA 231 3.29e+00 a.132.1.4 97299 1jigA 146 3.63e+00 a.25.1.1 71685 1za0A 275 3.77e+00 1ea9C 583 4.20e+00 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1lngA 87 4.23e+00 d.201.1.1 74045 1r6fA 310 4.40e+00 e.46.1.1 97149 4ubpC 570 4.63e+00 1ubpC b.92.1.1,c.1.9.2 28431,29053 1qgoA 264 4.82e+00 1qgoA c.92.1.2 35596 1o0wA 252 4.90e+00 a.149.1.1,d.50.1.1 80751,80752 1ve3A 227 4.99e+00 1oq9A 363 5.06e+00 a.25.1.2 87257 1z0sA 278 5.46e+00 1xmzA 241 6.18e+00 1lb3A 182 6.64e+00 a.25.1.1 77873 1b71A 191 7.00e+00 1ryt a.25.1.1,g.41.5.1 16647,45246 2b8wA 328 7.36e+00 1wdyA 285 7.51e+00 1suwA 249 7.65e+00 e.52.1.1 106027 1wtaA 275 7.81e+00 1vrtA 560 7.83e+00 1rthA c.55.3.1,e.8.1.2 33574,43023 1wzlA 585 7.92e+00 1kkoA 413 9.19e+00 c.1.11.2,d.54.1.1 68675,68676 1afrA 345 9.52e+00 1afrA a.25.1.2 16805 1w68A 390 9.76e+00 a.25.1.2 109216 1b00A 127 9.90e+00 3chy c.23.1.1 31122 1rthA 560 9.91e+00 1rthA c.55.3.1,e.8.1.2 33576,43028 1q7zA 566 1.01e+01 c.1.21.2,c.1.26.1 96090,96091 1j0hA 588 1.03e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1lkoA 191 1.08e+01 a.25.1.1,g.41.5.1 78063,78064 1j0aA 325 1.15e+01 c.79.1.1 83871 1j77A 209 1.25e+01 1j77A a.132.1.2 62674 2ct8A 497 1.27e+01 1oe9A 795 1.31e+01 b.34.3.1,c.37.1.9 92792,92793 1w7lA 422 1.36e+01 c.67.1.1 109226 1jug 125 1.47e+01 3lzt d.2.1.2 36587 1zesA 125 1.56e+01 1eumA 165 1.92e+01 1eumA a.25.1.1 59507 1pamA 686 1.94e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 2awiA 317 1.98e+01 1gntA 553 1.98e+01 e.26.1.1 70290 1gp1A 198 1.99e+01 1gp1A c.47.1.10 33059 1ryt 190 2.13e+01 1ryt a.25.1.1,g.41.5.1 16646,45245 1t6jA 714 2.15e+01 1qw9A 502 2.20e+01 b.71.1.2,c.1.8.3 96466,96467 1qtrA 317 2.22e+01 1qtrA c.69.1.7 34660 2avnA 260 2.27e+01 1gnlA 544 2.34e+01 e.26.1.1 70287 1w5fA 353 2.37e+01 1umnA 165 2.42e+01 a.25.1.1 99607 1bjwA 382 2.48e+01 1bjwA c.67.1.1 34349 1h0oA 390 2.52e+01 a.25.1.2 70845 1gkzA 388 2.58e+01 a.29.5.1,d.122.1.4 65268,65269 1e2uA 553 2.58e+01 1e1dA e.26.1.1 43362 1b5pA 385 2.60e+01 c.67.1.1 90403 2b4aA 138 2.64e+01 1wr2A 238 2.74e+01 1kqqA 139 2.78e+01 a.4.3.1 72885 1rw6A 210 2.83e+01 a.47.4.1 105113 1v0jA 399 2.89e+01 2choA 716 2.92e+01 1bob 320 2.95e+01 1bob d.108.1.1 40816 1xqaA 113 2.97e+01 1jmkC 230 2.98e+01 c.69.1.22 71747 1wznA 252 3.05e+01 1to3A 304 3.09e+01 c.1.10.1 107161 1g3mA 294 3.12e+01 c.37.1.5 83268 1uw4B 248 3.21e+01 a.118.1.14 100072 2ac2A 309 3.22e+01 2b7uA 257 3.24e+01 2napA 723 3.25e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1d3cA 686 3.33e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1y2mA 716 3.33e+01 1vb3A 428 3.42e+01 1wm1A 317 3.43e+01 c.69.1.7 109405 1vlqA 337 3.43e+01 c.69.1.25 108848 1huw 166 3.44e+01 1huw a.26.1.1 16831 1qmqA 414 3.57e+01 1phd a.104.1.1 18907 1z5hA 780 3.59e+01 1hf2A 210 3.62e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 2ff4A 388 3.64e+01 1xfjA 261 3.64e+01 d.194.1.2 109585 1vmeA 410 3.65e+01 c.23.5.1,d.157.1.3 108893,108894 1sa3A 262 3.71e+01 c.52.1.23 105400 1svdA 473 3.77e+01 1b6g 310 3.80e+01 1b6g c.69.1.8 34661 1n97A 389 3.81e+01 a.104.1.1 80335 1regX 122 3.84e+01 1regX d.58.27.1 39406 1dz4A 414 3.88e+01 1phd a.104.1.1 18903 1dozA 309 3.90e+01 1ak1 c.92.1.1 35592 1xsm 390 3.92e+01 1xsm a.25.1.2 16804 1uddA 226 4.00e+01 a.132.1.3 107776 1o54A 277 4.08e+01 c.66.1.13 92482 1k0dA 260 4.17e+01 a.45.1.1,c.47.1.5 67930,67931 1obr 326 4.18e+01 1aye c.56.5.2 33828 1evlA 401 4.20e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1izmA 184 4.26e+01 a.199.1.1 90725 1aisA 182 4.32e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1uedA 406 4.42e+01 a.104.1.1 99256 2a8yA 270 4.47e+01 1xtzA 264 4.52e+01 1iysA 262 4.52e+01 e.3.1.1 90723 1yrcA 414 4.53e+01 1vcsA 102 4.62e+01 2amdA 311 4.62e+01 1sw6A 327 4.65e+01 1sw6A d.211.1.1 19176 1o1yA 239 4.71e+01 c.23.16.1 86554 1rtqA 299 4.88e+01 c.56.5.4 97819 1st0A 337 4.94e+01 d.13.1.3,d.246.1.1 98979,98980 1bouB 302 4.94e+01 1bouB c.56.6.1 33859 1lokA 291 5.03e+01 c.56.5.4 78122 1zq4A 693 5.08e+01 1wouA 123 5.12e+01 c.47.1.16 109471 1xm9A 457 5.20e+01 2gl5A 410 5.38e+01 1ea5A 537 5.40e+01 2bce c.69.1.1 34592 1dpjA 329 5.40e+01 1smrA b.50.1.2 26828 2a7mA 250 5.41e+01 1oyjA 231 5.62e+01 a.45.1.1,c.47.1.5 87597,87598 1wl8A 189 5.63e+01 1zb1A 392 5.71e+01 2bzpA 226 5.78e+01 1ede 310 5.78e+01 1b6g c.69.1.8 34662 1zpyA 95 5.87e+01 1au1A 166 5.95e+01 1ifa a.26.1.3 16889 1nuyA 337 6.00e+01 e.7.1.1 86213 1zklA 353 6.00e+01 1k2yX 463 6.01e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1vhuA 211 6.12e+01 c.50.1.2 100703 1frpA 335 6.12e+01 1frpA e.7.1.1 42875 1re9A 414 6.14e+01 1hf8A 289 6.15e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1b24A 188 6.16e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1w96A 554 6.20e+01 2a5kA 307 6.26e+01 1wj9A 211 6.27e+01 1ek1A 554 6.29e+01 1cr6B c.69.1.11,c.108.1.2 34685,43335 2d1eA 248 6.37e+01 1qf6A 642 6.51e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1qmhA 347 6.56e+01 1qmhA c.47.2.1,d.68.2.1 33082,39568 1mp9A 198 6.69e+01 d.129.1.1,d.129.1.1 91385,91386 1yljA 263 6.70e+01 1rypI 222 6.71e+01 d.153.1.4 41877 2ethA 154 6.85e+01 1ej6D 418 6.86e+01 i.7.1.1 45970 2ac4A 309 6.92e+01 1nbwB 117 6.93e+01 c.51.3.2 80396 1hjzA 192 6.96e+01 c.50.1.2 83520 1qgrA 876 6.96e+01 1qgrA a.118.1.1 19119 2g6tA 306 6.97e+01 1yksA 440 7.00e+01 1g71A 347 7.00e+01 1g71A d.264.1.1 43268 1cfzA 162 7.02e+01 1cfzA c.56.1.1 33754 2chnA 716 7.08e+01 1ewqA 765 7.20e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1qqcA 773 7.26e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1k1xA 659 7.32e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1iujA 106 7.33e+01 d.58.4.5 90701 1htrB 329 7.34e+01 1smrA 1poiA 317 7.37e+01 1poiA c.124.1.2 34153 2ahqA 76 7.37e+01 1mrzA 293 7.37e+01 b.43.5.1,c.26.1.3 91452,91453 1qi7A 253 7.39e+01 1qi7A d.165.1.1 42210 1zy7A 403 7.48e+01 1wu3I 161 7.48e+01 1y10A 407 7.52e+01 1ako 268 7.54e+01 1ako d.151.1.1 41779 1amp 291 7.60e+01 1amp c.56.5.4 33837 2chgA 226 7.66e+01 1otkA 249 7.69e+01 a.25.1.2 93521 1gdeA 389 7.88e+01 c.67.1.1 60456 2fug1 438 7.91e+01 1z0xA 220 7.94e+01 1keaA 221 7.99e+01 a.96.1.2 68491 1wcgA 464 8.07e+01 1ztcA 221 8.11e+01 1pea 385 8.15e+01 1pea c.93.1.1 35662 1w7jA 795 8.15e+01 1vjoA 393 8.23e+01 c.67.1.3 100827 1gz6A 319 8.24e+01 c.2.1.2 76410 1zbqA 327 8.25e+01 1pi1A 185 8.26e+01 a.29.7.1 94699 1u7lA 392 8.31e+01 1z7aA 308 8.38e+01 1yovA 537 8.40e+01 1li5A 461 8.42e+01 a.27.1.1,c.26.1.1 73912,73913 2bmfA 451 8.47e+01 1qciA 262 8.54e+01 1qi7A d.165.1.1 42201 1rh9A 373 8.55e+01 1h4vB 421 8.56e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1ejxC 567 8.58e+01 b.92.1.1,c.1.9.2 83184,83185 1mhyD 521 8.76e+01 1mhyD a.25.1.2 16780 3lzt 129 8.93e+01 3lzt d.2.1.2 36245 1ustA 93 8.97e+01 a.4.5.13 99884 1hs7A 97 8.99e+01 1hs7A a.47.2.1 61236 1oboA 169 8.99e+01 c.23.5.1 86776