# List of top-scoring protein chains for T0383.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xx7A 184 2.40e+00 1goiA 499 4.06e+00 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1wgeA 83 5.77e+00 1e6zA 498 6.34e+00 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59330,59331,59332 1o6iA 499 6.35e+00 b.72.2.1,c.1.8.5,d.26.3.1 86630,86631,86632 1h0iA 499 6.46e+00 b.72.2.1,c.1.8.5,d.26.3.1 70838,70839,70840 1x5kA 124 7.24e+00 1m2eA 135 8.89e+00 c.23.1.5 78478 1itxA 419 8.91e+00 c.1.8.5,d.26.3.1 71425,71426 1ogbA 499 1.03e+01 b.72.2.1,c.1.8.5,d.26.3.1 92882,92883,92884 1ur9A 499 1.03e+01 b.72.2.1,c.1.8.5,d.26.3.1 99819,99820,99821 1dkfB 235 1.10e+01 2lbd a.123.1.1 19281 1x3bA 146 1.23e+01 1ul4A 94 1.29e+01 g.72.1.1 99538 1sra 151 1.33e+01 1sra a.39.1.3 17190 1nexB 464 1.60e+01 a.158.1.1,b.69.4.1 80443,80444 1g7dA 106 1.64e+01 1g7dA a.71.1.1 18318 1z3zA 431 1.79e+01 1m0qA 433 1.79e+01 c.67.1.4 78350 1e6pA 499 1.82e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1bmoA 233 1.84e+01 1sra a.39.1.3,g.3.11.3,g.68.1.1 17193,44332,44717 1s1iX 120 2.09e+01 i.1.1.1 105198 1fd0A 235 2.38e+01 a.123.1.1 76164 1fcyA 236 2.38e+01 2lbd a.123.1.1 19282 2gupA 292 2.44e+01 1exaA 246 2.47e+01 2lbd a.123.1.1 19285 1xapA 267 2.57e+01 2lbd 267 2.57e+01 2lbd a.123.1.1 19287 1r8jA 289 2.64e+01 a.186.1.1,c.23.1.5 104847,104848 1xdkB 303 2.79e+01 1dgd 432 2.80e+01 2dkb c.67.1.4 34443 1yxlA 119 2.82e+01 1d7uA 433 2.85e+01 2dkb c.67.1.4 34439 1nhkL 144 2.94e+01 1npk d.58.6.1 39142 1fjjA 159 3.05e+01 1fjjA b.17.1.2 59852 1z81A 229 3.18e+01 1vi3A 170 3.22e+01 b.17.1.2 100730 1x6mA 196 3.49e+01 1kfd 605 4.02e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 2kfnA 605 4.02e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 2anpA 291 4.06e+01 1lokA 291 4.08e+01 c.56.5.4 78122 1rtqA 299 4.15e+01 c.56.5.4 97819 1g0u1 266 4.36e+01 1jj2E 177 4.41e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 2mtaH 373 4.47e+01 2bbkH b.69.2.1 27636 2bl1A 172 4.47e+01 1vqoE 178 4.49e+01 1yvoA 172 4.49e+01 1dlaA 314 4.57e+01 1frb c.1.7.1 28690 1ryp2 233 4.58e+01 1ryp2 1ah4 315 4.58e+01 1frb c.1.7.1 28684 1ah0 316 4.59e+01 1frb c.1.7.1 28685 1oftA 161 4.74e+01 c.37.1.22 86968 1kopA 223 4.76e+01 2cba b.74.1.1 27966 1uexC 209 4.81e+01 c.62.1.1 99284 1sq0A 214 4.81e+01 c.62.1.1 98959 1auq 208 4.83e+01 1auq c.62.1.1 34137 1y9wA 140 4.85e+01 1vf8A 377 4.93e+01 1uq5A 263 4.99e+01 d.165.1.1 99778 1rm8A 169 5.03e+01 d.92.1.11 97660 2ewoA 377 5.06e+01 2bbkH 355 5.07e+01 2bbkH b.69.2.1 27634 1g5aA 628 5.08e+01 b.71.1.1,c.1.8.1 65152,65153 1poa 118 5.12e+01 1poa a.133.1.2 19514 1mvyA 628 5.12e+01 b.71.1.1,c.1.8.1 79547,79548 1jgiA 628 5.16e+01 b.71.1.1,c.1.8.1 66676,66677 1ijbA 202 5.17e+01 c.62.1.1 71229 1klnA 605 5.18e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1q98A 165 5.45e+01 c.47.1.10 96253 1ofuX 119 5.56e+01 c.37.1.22 86976 1ax4A 467 5.66e+01 1ax4A c.67.1.2 34391 1a3d 119 5.75e+01 1poa a.133.1.2 19517 2h6nA 312 5.80e+01 1d8yA 605 5.90e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 1vp4A 425 5.92e+01 1iruJ 205 5.94e+01 d.153.1.4 71361 2gnqA 336 5.98e+01 1fs1A 53 6.05e+01 1fqvA a.158.1.1 19250 1j1mA 268 6.16e+01 d.165.1.1 90767 1daqA 71 6.16e+01 1daqA a.139.1.1 59113 1zitA 121 6.21e+01 1ttuA 477 6.39e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1f5yA 85 6.81e+01 1f5yA g.12.1.1,g.12.1.1 44610,44611 1jhdA 396 6.81e+01 b.122.1.3,c.26.1.5 66712,66713 1a6f 119 6.92e+01 1a6f d.14.1.2 37564 1outA 143 6.96e+01 1abwA a.1.1.2 15400 1v61A 132 7.26e+01 b.55.1.1 108389 1xoyA 161 7.59e+01 1rf8A 213 7.75e+01 d.86.1.1 97370 1etqA 98 7.77e+01 1fipA a.4.1.12 19000 1o6bA 169 7.78e+01 c.26.1.3 92564 1dt1A 129 7.90e+01 1c52 a.3.1.1 15811 1c52 131 7.94e+01 1c52 a.3.1.1 15810 2a55A 133 7.95e+01 1focA 132 7.96e+01 1c52 a.3.1.1 15812 2fwlA 133 7.99e+01 1ldkE 41 8.06e+01 a.158.1.1 73857 2bs3B 239 8.14e+01 1jk7A 323 8.15e+01 1auiA d.159.1.3 63144 1yn9A 169 8.31e+01 1oakA 196 8.43e+01 1auq c.62.1.1 34138 2agjL 215 8.51e+01 1mh7A 119 8.72e+01 a.133.1.2 84962 1fnsA 196 8.82e+01 1auq c.62.1.1 34136 1mh8A 119 8.96e+01 a.133.1.2 84963