# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2kfnA 605 1.08e+00 1xwl c.55.3.5,e.8.1.1 33682,42975 1kfd 605 1.43e+00 1xwl c.55.3.5,e.8.1.1 33694,42987 1d8yA 605 1.79e+00 1xwl c.55.3.5,e.8.1.1 33684,42977 1u6zA 513 2.01e+00 1klnA 605 2.20e+00 1xwl c.55.3.5,e.8.1.1 33693,42986 1qynA 153 3.85e+00 d.33.1.1 96597 1vhmA 195 5.10e+00 d.110.2.1 100691 1mugA 168 7.82e+00 1mugA c.18.1.2 31030 1m9sA 605 8.15e+00 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1bh9A 45 8.48e+00 1bh9A a.22.1.3 16483 1vq0A 302 8.58e+00 1h1hA 134 8.75e+00 d.5.1.1 76468 1qmtA 134 8.75e+00 7rsa d.5.1.1 37290 1vjpA 394 8.85e+00 c.2.1.3,d.81.1.3 100828,100829 1dytA 133 8.88e+00 7rsa d.5.1.1 37288 1oshA 232 1.00e+01 a.123.1.1 93496 1lxtA 561 1.07e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35432,35433,35434,41309 1kopA 223 1.19e+01 2cba b.74.1.1 27966 1e69B 322 1.19e+01 1e69B c.37.1.12 32377 1sefA 274 1.22e+01 b.82.1.11 105452 1ryp2 233 1.40e+01 1ryp2 1k3xA 262 1.42e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1fl1A 230 1.46e+01 1at3A b.57.1.1 27023 1g0sA 209 1.47e+01 1g0sA d.113.1.1 60187 2ggcA 263 1.59e+01 1auq 208 1.61e+01 1auq c.62.1.1 34137 4matA 278 1.67e+01 1c24A d.127.1.1 41150 1g7dA 106 1.68e+01 1g7dA a.71.1.1 18318 1g0u1 266 1.69e+01 1mat 264 1.69e+01 1c24A d.127.1.1 41152 1c24A 263 1.76e+01 1c24A d.127.1.1 41148 1xnzA 264 1.76e+01 1ijbA 202 1.77e+01 c.62.1.1 71229 1j93A 353 1.82e+01 c.1.22.1 66454 1fx3B 169 1.93e+01 1fx3B d.33.1.1 38525 2matA 264 1.97e+01 1c24A d.127.1.1 41146 1qqcA 773 2.01e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 2lbd 267 2.22e+01 2lbd a.123.1.1 19287 4lbd 267 2.22e+01 2lbd a.123.1.1 19289 1fcyA 236 2.38e+01 2lbd a.123.1.1 19282 1xhbA 472 2.41e+01 1sjqA 105 2.49e+01 d.58.7.1 105660 1b6fA 159 2.51e+01 1bv1 d.129.3.1 41316 1f3mA 80 2.54e+01 1f3mA j.66.1.1 46358 1g5aA 628 2.60e+01 b.71.1.1,c.1.8.1 65152,65153 1v61A 132 2.62e+01 b.55.1.1 108389 1ffk1 177 2.72e+01 1ffk1 1mkmA 249 2.73e+01 a.4.5.33,d.110.2.2 79242,79243 1ttuA 477 2.84e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1oakA 196 2.86e+01 1auq c.62.1.1 34138 1fnsA 196 2.86e+01 1auq c.62.1.1 34136 1o0xA 262 3.15e+01 d.127.1.1 80755 1i1iP 681 3.18e+01 1i1iP d.92.1.5 40297 1tzfA 259 3.34e+01 c.68.1.13 107476 1dowA 205 3.39e+01 1dovA a.24.9.1 16626 1mc0A 368 3.44e+01 d.110.2.1,d.110.2.1 78937,78938 1d4fA 431 3.46e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 1vqoE 178 3.53e+01 1jy5A 212 3.57e+01 d.124.1.1 71940 1y7tA 327 3.59e+01 1bmdA 327 3.61e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 1bdmA 327 3.63e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1ysqA 193 3.64e+01 1dovA 181 3.69e+01 1dovA a.24.9.1 16627 1ukfA 188 3.86e+01 d.3.1.10 99488 1bdmB 327 3.86e+01 1bmdA c.2.1.5,d.162.1.1 30138,42105 1s9jA 341 3.91e+01 1jj2E 177 3.95e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1wvcA 259 4.07e+01 2gx9A 129 4.38e+01 1vs0A 310 4.49e+01 2bskB 90 4.53e+01 1li4A 432 4.55e+01 c.2.1.4,c.23.12.3 84616,84617 1xwfA 431 4.62e+01 1lshA 1056 4.69e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1g33A 73 4.76e+01 a.39.1.4 65121 1a3yA 149 4.88e+01 1obpA b.60.1.1 27110 1rwyA 109 4.95e+01 a.39.1.4 98002 1s1eA 224 5.01e+01 1eujA 166 5.05e+01 1eujA b.40.4.4 25316 1s72E 178 5.05e+01 d.141.1.1,d.141.1.1 105323,105324 1onwA 390 5.12e+01 b.92.1.7,c.1.9.13 87172,87173 1xvjA 109 5.27e+01 1lay 256 5.34e+01 1lay b.57.1.1 27014 1onxA 390 5.36e+01 b.92.1.7,c.1.9.13 87176,87177 1khbA 625 5.36e+01 c.91.1.1,c.109.1.1 68606,68607 1xoyA 161 5.41e+01 1azpA 66 5.43e+01 1azpA b.34.13.1 37467 1azqA 66 5.44e+01 1azpA b.34.13.1 37469 1dqnA 230 5.46e+01 1dqnA c.61.1.1 34067 1ako 268 5.54e+01 1ako d.151.1.1 41779 1i39A 225 5.56e+01 1ekeA c.55.3.1 61585 1e6oL 212 5.62e+01 32c2A b.1.1.1,b.1.1.2 20494,21452 1lssA 140 5.68e+01 c.2.1.9 74246 1y7bA 542 5.96e+01 1am9A 82 5.99e+01 1am9A a.38.1.1 17140 1xrtA 467 6.01e+01 1dqpA 230 6.17e+01 1dqnA c.61.1.1 34069 2gpiA 91 6.38e+01 1egdA 396 6.66e+01 3mdeA a.29.3.1,e.6.1.1 16596,42857 1xuvA 178 6.69e+01 1n1jA 93 6.70e+01 a.22.1.3 79813 1ilyA 90 6.71e+01 c.55.4.1 71245 1hyeA 313 6.74e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1kobA 387 6.77e+01 1tkiA d.144.1.7 41640 1qh7A 207 6.86e+01 1axkA b.29.1.11 24317 1q6zA 528 6.92e+01 1sviA 195 6.98e+01 c.37.1.8 106048 1tgoA 773 7.00e+01 1tgoA c.55.3.5,e.8.1.1 33721,43010 1icpA 376 7.08e+01 1oyc c.1.4.1 62270 1xesA 413 7.11e+01 1bfd 528 7.12e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1c4kA 730 7.16e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1zndA 174 7.18e+01 15c8L 213 7.30e+01 8fabA b.1.1.1,b.1.1.2 20300,21292 1wucA 250 7.32e+01 1t01B 24 7.36e+01 1phk 298 7.37e+01 1cdkA d.144.1.7 41635 1lj8A 493 7.44e+01 a.100.1.9,c.2.1.6 90392,90393 3pmgA 561 7.47e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1wywA 230 7.59e+01 1jv4A 162 7.65e+01 b.60.1.1 67343 2c0zA 216 7.69e+01 1hf2A 210 7.87e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1q72L 218 7.88e+01 b.1.1.1,b.1.1.2 96016,96017 1hw7A 255 7.94e+01 1i7fA d.193.1.1 61297 2c2xA 281 8.14e+01 1qy1A 174 8.20e+01 b.60.1.1 96568 2gf6A 135 8.26e+01 1ro0A 216 8.27e+01 d.264.1.2 97664 2bl1A 172 8.34e+01 1uujA 88 8.38e+01 a.221.1.1 108046 1yvoA 172 8.39e+01 1i7fA 292 8.39e+01 1i7fA d.193.1.1 61888 2fbjL 213 8.43e+01 8fabA b.1.1.1,b.1.1.2 19850,20954 2h0eA 121 8.44e+01 1do6A 124 8.48e+01 1do6A b.1.13.1 22361 1b6q 63 8.50e+01 1nkd a.30.1.1 16977 1i6uA 130 8.52e+01 d.140.1.1 61850 1ewfA 456 8.54e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1q77A 138 8.68e+01 c.26.2.4 96023 1g0uI 205 8.70e+01 d.153.1.4 41891 1f2tA 149 8.72e+01 1f2tA c.37.1.12 32373 1lybA 97 8.81e+01 1smrA b.50.1.2 26857 1z54A 132 8.96e+01