# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ukfA 188 3.67e-01 d.3.1.10 99488 1mugA 168 6.73e-01 1mugA c.18.1.2 31030 1xauA 122 8.85e-01 1fcyA 236 1.43e+00 2lbd a.123.1.1 19282 1qynA 153 1.56e+00 d.33.1.1 96597 1u6zA 513 1.79e+00 1oshA 232 1.90e+00 a.123.1.1 93496 1ijbA 202 2.18e+00 c.62.1.1 71229 1yvoA 172 2.42e+00 1erjA 393 3.09e+00 1erjA b.69.4.1 27660 2czrA 226 3.35e+00 1qwrA 319 3.83e+00 b.82.1.3 96491 1ud9A 245 3.85e+00 d.131.1.2,d.131.1.2 107768,107769 1zcbA 362 4.14e+00 1mkaA 171 4.15e+00 1mkaA d.38.1.2 38543 2gf6A 135 4.27e+00 1z5yE 149 5.00e+00 2bjfA 329 5.49e+00 1j93A 353 5.80e+00 c.1.22.1 66454 1w07A 659 5.82e+00 2ggcA 263 5.92e+00 1qysA 106 6.46e+00 k.41.1.1 96603 1g5aA 628 6.54e+00 b.71.1.1,c.1.8.1 65152,65153 1z54A 132 7.42e+00 1li4A 432 7.72e+00 c.2.1.4,c.23.12.3 84616,84617 1ewfA 456 8.05e+00 1bp1 d.83.1.1,d.83.1.1 40024,40025 1kjvB 100 8.60e+00 b.1.1.2 77423 2b8eA 273 8.63e+00 1e8gA 560 1.02e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1edg 380 1.13e+01 1edg c.1.8.3 28807 1fjjA 159 1.17e+01 1fjjA b.17.1.2 59852 1mnnA 340 1.22e+01 b.2.5.7 79324 2c36A 285 1.24e+01 2d8aA 348 1.27e+01 2f51A 118 1.32e+01 1g0sA 209 1.32e+01 1g0sA d.113.1.1 60187 1fit 147 1.41e+01 1fit d.13.1.1 37499 1bh9A 45 1.44e+01 1bh9A a.22.1.3 16483 1imjA 210 1.48e+01 c.69.1.23 71246 1eceA 358 1.53e+01 1eceA c.1.8.3 28813 1lk2B 99 1.61e+01 b.1.1.2 91058 1oqjA 97 1.64e+01 d.217.1.1 93417 1kopA 223 1.81e+01 2cba b.74.1.1 27966 3pmgA 561 1.81e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1lj8A 493 1.94e+01 a.100.1.9,c.2.1.6 90392,90393 1t64A 377 1.96e+01 c.42.1.2 106543 1yqdA 366 2.06e+01 1cqqA 180 2.07e+01 1cqqA b.47.1.4 26422 1gcvB 136 2.08e+01 1cg5B a.1.1.2 15589 1f2tA 149 2.08e+01 1f2tA c.37.1.12 32373 2c3vA 102 2.11e+01 1n12A 138 2.14e+01 b.2.3.2 79779 1pv5A 264 2.17e+01 d.251.1.1 95150 1lugA 259 2.28e+01 b.74.1.1 91127 2c6cA 707 2.30e+01 1wc2A 181 2.36e+01 1x8qA 184 2.37e+01 1o0xA 262 2.40e+01 d.127.1.1 80755 1ia9A 280 2.40e+01 1ia9A d.144.1.5 62113 1wt4A 73 2.46e+01 1mkyA 439 2.48e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1mkmA 249 2.56e+01 a.4.5.33,d.110.2.2 79242,79243 1fm4A 159 2.58e+01 1bv1 d.129.3.1 76186 1dytA 133 2.62e+01 7rsa d.5.1.1 37288 2gnqA 336 2.63e+01 1msk 331 2.69e+01 1msk d.173.1.1 42495 1oj4A 283 2.73e+01 d.14.1.5,d.58.26.5 93083,93084 1ceo 343 2.74e+01 1ceo c.1.8.3 28808 2napA 723 2.74e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1ub4A 110 2.76e+01 b.34.6.2 88399 2giyA 191 2.80e+01 2h0bA 184 2.82e+01 1vqoE 178 2.88e+01 1snzA 344 2.90e+01 b.30.5.4 98930 1xnzA 264 2.93e+01 1m4iA 181 2.97e+01 d.108.1.1 74457 1gtmA 419 3.07e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 2b9wA 424 3.17e+01 1i58A 189 3.21e+01 1b3qA d.122.1.3 61773 1q77A 138 3.29e+01 c.26.2.4 96023 1fl1A 230 3.31e+01 1at3A b.57.1.1 27023 1yemA 179 3.44e+01 1m98A 317 3.47e+01 a.175.1.1,d.17.4.6 78866,78867 1ex2A 189 3.61e+01 1ex2A c.51.4.2 33225 1d7uA 433 3.61e+01 2dkb c.67.1.4 34439 2bjbA 462 3.66e+01 1ooeA 236 3.70e+01 c.2.1.2 87196 1n0xL 215 3.70e+01 b.1.1.1,b.1.1.2 91532,91533 1h21A 247 3.77e+01 a.138.1.3 76510 1tzfA 259 3.79e+01 c.68.1.13 107476 1vqzA 341 3.89e+01 1dqiA 124 3.89e+01 1do6A b.1.13.1 22357 1lshA 1056 3.89e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1dlfL 113 3.93e+01 8fabA b.1.1.1 20382 1zpyA 95 3.93e+01 1qj4A 257 3.94e+01 1qj4A c.69.1.20 34796 7odcA 424 3.94e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1onwA 390 4.05e+01 b.92.1.7,c.1.9.13 87172,87173 1ako 268 4.19e+01 1ako d.151.1.1 41779 1qmeA 702 4.20e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2d5cA 263 4.25e+01 1wudA 89 4.26e+01 2g6yA 217 4.34e+01 1wpoA 256 4.45e+01 1lay b.57.1.1 27012 1wywA 230 4.51e+01 1vq0A 302 4.51e+01 1jp4A 308 4.52e+01 1jp4A e.7.1.1 63223 1vjpA 394 4.52e+01 c.2.1.3,d.81.1.3 100828,100829 1gvkB 240 4.55e+01 b.47.1.2 70610 1wb0A 445 4.69e+01 1zjcA 418 4.70e+01 1qahA 136 4.73e+01 d.79.1.1 96338 2cwzA 141 4.81e+01 1jr7A 311 4.86e+01 b.82.2.3 63255 1yqtA 538 4.86e+01 1wzcA 249 4.95e+01 1j27A 102 5.01e+01 d.58.50.1 90778 2gx9A 129 5.04e+01 1p42A 270 5.13e+01 d.14.1.7,d.14.1.7 87754,87755 1unqA 125 5.31e+01 b.55.1.1 107968 1xvsA 126 5.32e+01 1nynA 131 5.43e+01 d.235.1.1 86410 1ryp2 233 5.59e+01 1ryp2 9wgaA 171 5.61e+01 9wgaA g.3.1.1,g.3.1.1,g.3.1.1,g.3.1.1 44000,44001,44002,44003 1jk7A 323 5.69e+01 1auiA d.159.1.3 63144 1yckA 175 5.70e+01 1t01B 24 5.74e+01 1s0yA 76 5.82e+01 d.80.1.1 98314 1yqvL 211 5.82e+01 1zuhA 168 5.83e+01 1uzeA 589 5.87e+01 d.92.1.5 108174 1uujA 88 5.90e+01 a.221.1.1 108046 1rp3B 88 5.90e+01 a.137.11.1 97681 1olzA 663 5.90e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1vkfA 188 5.92e+01 c.1.29.1 108656 1cojA 212 6.09e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1tkiA 321 6.10e+01 1tkiA d.144.1.7 41638 1dzkA 157 6.11e+01 1obpA b.60.1.1 27096 1r8mE 203 6.15e+01 a.118.3.1 97242 2fqxA 318 6.17e+01 1uhgA 385 6.18e+01 e.1.1.1 88491 1zj8A 566 6.19e+01 1vkyA 347 6.25e+01 e.53.1.1 108696 1i39A 225 6.26e+01 1ekeA c.55.3.1 61585 1gqeA 365 6.39e+01 e.38.1.1 70351 1zupA 315 6.42e+01 2ck3H 146 6.42e+01 1tf1A 198 6.46e+01 d.110.2.2 106826 1nytA 271 6.51e+01 c.2.1.7,c.58.1.5 86417,86418 1kjlA 146 6.52e+01 1fljA 260 6.58e+01 2cba b.74.1.1 27954 2d9rA 104 6.58e+01 1h6dA 433 6.65e+01 c.2.1.3,d.81.1.5 65656,65657 1svsA 353 6.65e+01 c.37.1.8 106051 1uyjA 296 6.65e+01 f.8.1.2 108143 1ollA 188 6.69e+01 b.1.1.4,b.1.1.4 93313,93314 1k5nB 100 6.82e+01 b.1.1.2 77268 1h4vB 421 6.82e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2gi3A 476 7.02e+01 1gyxA 76 7.03e+01 d.80.1.1 76387 1mg7A 417 7.06e+01 d.14.1.6,d.58.26.6 84954,84955 1jd0A 263 7.09e+01 2cba b.74.1.1 62888 1lvaA 258 7.10e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1jjtA 228 7.13e+01 1a7tA d.157.1.1 63139 1wrvA 308 7.15e+01 1ew6A 137 7.25e+01 1ewaA a.1.1.2 15637 2g30A 258 7.31e+01 1ig5A 75 7.45e+01 4icb a.39.1.1 62363 1t3qC 288 7.45e+01 d.87.2.1,d.145.1.3 106371,106372 1fi2A 201 7.46e+01 1fi2A b.82.1.2 59845 1y0kA 209 7.50e+01 2g9zA 348 7.51e+01 1eybA 471 7.53e+01 1ey2A b.82.1.4 28115 1ysqA 193 7.54e+01 1jmxB 349 7.61e+01 b.69.2.2 66906 1yi9A 309 7.62e+01 1pz4A 116 7.63e+01 d.106.1.1 95400 1dkzA 219 7.64e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1rb9 53 7.64e+01 1rb9 g.41.5.1 45214 1txjA 171 7.66e+01 b.88.1.2 107424 1c8cA 64 7.68e+01 1azpA b.34.13.1 59084 1u3dA 509 7.76e+01 a.99.1.1,c.28.1.1 107638,107639 1vhcA 224 7.76e+01 c.1.10.1 100661 1s69A 124 7.90e+01 a.1.1.1 105305 1q9rA 219 7.99e+01 b.1.1.1,b.1.1.2 96305,96306 1v7rA 186 8.04e+01 c.51.4.1 100482 1vf6A 83 8.06e+01 a.194.1.1 100600 1iz5A 249 8.06e+01 d.131.1.2,d.131.1.2 83834,83835 1u9lA 70 8.08e+01 a.60.4.2 107751 1d5tA 433 8.08e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1yrkA 126 8.11e+01 1l0wA 580 8.12e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1htwA 158 8.14e+01 c.37.1.18 71083 1bdmA 327 8.15e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1vjkA 98 8.17e+01 d.15.3.1 108631 1g0cA 364 8.22e+01 7a3hA c.1.8.3 60165 1b8kA 119 8.31e+01 1bndA g.17.1.3 44795 2h4uA 145 8.36e+01 1rds 105 8.40e+01 9rnt d.1.1.4 36236 1ttuA 477 8.41e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1jeoA 180 8.41e+01 c.80.1.3 66611 1s4bP 674 8.42e+01 d.92.1.5 105252 2ajuL 216 8.48e+01 1ncwL 219 8.52e+01 b.1.1.1,b.1.1.2 85557,85558 1wleA 501 8.56e+01 1ozjA 144 8.59e+01 d.164.1.1 93846 1i8fA 81 8.59e+01 1i8fA b.38.1.1 61959 2c31A 568 8.61e+01 1cipA 353 8.69e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1e9gA 286 8.76e+01 1wgjA b.40.5.1 59393 1hf2A 210 8.77e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1mjuL 219 8.80e+01 b.1.1.1,b.1.1.2 91304,91305 1wckA 220 8.80e+01 1n62C 288 8.82e+01 d.87.2.1,d.145.1.3 80094,80095 1sviA 195 8.84e+01 c.37.1.8 106048 1yhtA 367 8.90e+01