# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mugA 168 6.44e-01 1mugA c.18.1.2 31030 1qysA 106 1.54e+00 k.41.1.1 96603 1sra 151 2.39e+00 1sra a.39.1.3 17190 1jk7A 323 2.81e+00 1auiA d.159.1.3 63144 1oshA 232 2.88e+00 a.123.1.1 93496 1fcyA 236 3.96e+00 2lbd a.123.1.1 19282 1bh9A 45 5.17e+00 1bh9A a.22.1.3 16483 1edg 380 5.97e+00 1edg c.1.8.3 28807 1k3xA 262 6.06e+00 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1u6zA 513 6.32e+00 2gi3A 476 6.50e+00 1wywA 230 6.97e+00 1fit 147 7.13e+00 1fit d.13.1.1 37499 1ijbA 202 7.50e+00 c.62.1.1 71229 1qynA 153 8.31e+00 d.33.1.1 96597 1pmi 440 8.61e+00 1pmi b.82.1.3 28114 1y9wA 140 1.03e+01 1n1jA 93 1.11e+01 a.22.1.3 79813 1dqpA 230 1.14e+01 1dqnA c.61.1.1 34069 1yvoA 172 1.21e+01 1w33A 181 1.26e+01 1q6zA 528 1.28e+01 1vrmA 325 1.29e+01 1vqoE 178 1.32e+01 1z3xA 238 1.33e+01 1f2tA 149 1.46e+01 1f2tA c.37.1.12 32373 1nynA 131 1.59e+01 d.235.1.1 86410 1ryp1 222 1.67e+01 1ryp1 1pz4A 116 1.74e+01 d.106.1.1 95400 2f6hX 419 1.77e+01 1fmjA 351 1.77e+01 c.37.1.5 59879 1nrlA 316 1.82e+01 a.123.1.1 92091 1rwyA 109 1.85e+01 a.39.1.4 98002 1ojqA 212 1.89e+01 d.166.1.1 93146 1c1dA 355 1.94e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1otfA 62 1.95e+01 1otfA d.80.1.1 39820 1ul4A 94 1.95e+01 g.72.1.1 99538 1r8mE 203 1.99e+01 a.118.3.1 97242 1zthA 258 2.02e+01 1d7uA 433 2.06e+01 2dkb c.67.1.4 34439 2gf6A 135 2.07e+01 1tzyB 126 2.10e+01 a.22.1.1 107531 1gyxA 76 2.12e+01 d.80.1.1 76387 1a76 326 2.15e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1s69A 124 2.17e+01 a.1.1.1 105305 1otjA 283 2.20e+01 b.82.2.5 93517 1uluA 261 2.21e+01 1ohzB 60 2.22e+01 a.139.1.1 93044 1l8dA 112 2.32e+01 h.4.12.1 73687 1h5wA 309 2.33e+01 e.27.1.1 65635 2gp5A 349 2.42e+01 2hddA 61 2.44e+01 2hddA a.4.1.1 15971 1xvsA 126 2.56e+01 1yxmA 303 2.62e+01 1r8sE 203 2.72e+01 a.118.3.1 97248 1vhrA 184 2.79e+01 1vhrA c.45.1.1 32651 1a8l 226 2.87e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1gtmA 419 2.97e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1msk 331 3.03e+01 1msk d.173.1.1 42495 1ucrA 78 3.04e+01 a.4.5.45 99188 1sd4A 126 3.06e+01 a.4.5.39 105428 1m6kA 251 3.07e+01 e.3.1.1 78695 2es9A 115 3.12e+01 1m4jA 142 3.14e+01 d.109.1.2 78602 1m3sA 186 3.24e+01 c.80.1.3 78573 1w6uA 302 3.24e+01 1wtaA 275 3.26e+01 1c52 131 3.41e+01 1c52 a.3.1.1 15810 1dugA 234 3.56e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1ukfA 188 3.58e+01 d.3.1.10 99488 1oz9A 150 3.64e+01 d.92.1.15 93808 1ryp2 233 3.70e+01 1ryp2 1wpbA 172 3.77e+01 1gpqA 135 3.84e+01 d.233.1.1 83295 1h8pA 109 3.87e+01 g.14.1.2,g.14.1.2 70916,70917 2f1rA 171 3.92e+01 1mjhA 162 3.95e+01 1mjhA c.26.2.4 31639 1uq5A 263 3.98e+01 d.165.1.1 99778 1tvgA 153 4.15e+01 1mkaA 171 4.19e+01 1mkaA d.38.1.2 38543 1tkeA 224 4.23e+01 1bgc 174 4.23e+01 1bgc a.26.1.1 16822 1z8uA 102 4.26e+01 1kjlA 146 4.31e+01 1o6zA 303 4.36e+01 c.2.1.5,d.162.1.1 81107,81108 1h7sA 365 4.37e+01 d.14.1.3,d.122.1.2 65705,65706 1t0qB 330 4.39e+01 a.25.1.2 106221 1wudA 89 4.42e+01 1ee8A 266 4.49e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1xvhA 129 4.67e+01 1o60A 292 4.74e+01 c.1.10.4 92532 1p1jA 533 4.77e+01 c.2.1.3,d.81.1.3 87687,87688 2es7A 142 4.81e+01 1y74A 57 4.87e+01 1ceo 343 4.87e+01 1ceo c.1.8.3 28808 1iu4A 331 4.88e+01 d.3.1.8 71430 1sseB 86 4.97e+01 1puc 105 4.98e+01 1puc d.97.1.1 40675 1x6mA 196 5.01e+01 1xauA 122 5.04e+01 1xqwA 293 5.10e+01 1b7yA 350 5.11e+01 1pysA d.104.1.1 40776 1quuA 250 5.12e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1ewfA 456 5.21e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1t1jA 125 5.23e+01 c.137.1.1 106249 1mtzA 293 5.27e+01 c.69.1.7 79467 1r2zA 274 5.27e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1s0pA 176 5.30e+01 a.192.1.1 98300 1dytA 133 5.31e+01 7rsa d.5.1.1 37288 2bskB 90 5.40e+01 1wjtA 103 5.43e+01 1nf3A 195 5.44e+01 c.37.1.8 85594 2cx1A 187 5.54e+01 2ga9D 469 5.64e+01 1wt4A 73 5.66e+01 1owfA 99 5.78e+01 a.55.1.1 87487 2fm9A 215 5.90e+01 1x8qA 184 5.91e+01 1i12A 160 5.95e+01 1i21A d.108.1.1 61515 1xewX 182 5.99e+01 1ew4A 106 6.00e+01 1ew4A d.82.2.1 40023 2cfaA 217 6.14e+01 1ib8A 164 6.15e+01 b.38.2.1,d.52.4.1 71168,71169 1hleA 345 6.19e+01 1ovaA e.1.1.1 42618 1ysqA 193 6.22e+01 1jpaA 312 6.28e+01 d.144.1.7 67011 1vr5A 547 6.33e+01 2be4A 272 6.45e+01 1zjcA 418 6.56e+01 2daxA 152 6.58e+01 1xo5A 183 6.63e+01 1qc7A 101 6.65e+01 1qc7A a.118.14.1 18456 1q77A 138 6.67e+01 c.26.2.4 96023 1z0jB 59 6.68e+01 1scfA 273 6.71e+01 1exzA a.26.1.2 16873 1ozjA 144 6.72e+01 d.164.1.1 93846 1u5pA 216 6.73e+01 1i39A 225 6.74e+01 1ekeA c.55.3.1 61585 2bz1A 196 6.80e+01 1vq0A 302 6.84e+01 1zavU 30 6.87e+01 1mnnA 340 6.95e+01 b.2.5.7 79324 1rb9 53 7.16e+01 1rb9 g.41.5.1 45214 1iseA 185 7.23e+01 d.67.3.1 90691 1wa5B 530 7.29e+01 1ywwA 85 7.39e+01 1p7gA 222 7.54e+01 a.2.11.1,d.44.1.1 94223,94224 1xkpC 143 7.58e+01 1ayl 541 7.60e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1v7bA 185 7.63e+01 1u84A 90 7.81e+01 1eteA 134 7.85e+01 1eteA a.26.1.2 16869 1mwpA 96 7.85e+01 1mwpA d.170.2.1 42453 2bd0A 244 7.85e+01 1w9yA 319 7.91e+01 1vhcA 224 7.91e+01 c.1.10.1 100661 1jkoC 52 7.98e+01 a.4.1.2 66809 1g0sA 209 8.02e+01 1g0sA d.113.1.1 60187 1y9bA 90 8.05e+01 2gpjA 252 8.17e+01 1tp5A 119 8.20e+01 1h5qA 265 8.20e+01 1cydA c.2.1.2 60643 1xs0A 136 8.23e+01 1zpyA 95 8.23e+01 1vqzA 341 8.27e+01 1x31D 99 8.32e+01 1o69A 394 8.43e+01 c.67.1.4 92560 1p2xA 159 8.48e+01 a.40.1.1 104062 2fs3A 282 8.54e+01 2bjbA 462 8.63e+01 1rro 108 8.72e+01 1a75A a.39.1.4 17195 2cxcA 144 8.77e+01 1u9lA 70 8.82e+01 a.60.4.2 107751 1b8aA 438 8.86e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1mkmA 249 8.87e+01 a.4.5.33,d.110.2.2 79242,79243 1w07A 659 8.89e+01 1iw0A 215 8.97e+01 a.132.1.1 83720