# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qynA 153 5.12e-01 d.33.1.1 96597 2ggcA 263 1.43e+00 1mugA 168 1.65e+00 1mugA c.18.1.2 31030 1xnzA 264 1.79e+00 1u6zA 513 1.79e+00 1ijbA 202 2.80e+00 c.62.1.1 71229 1f2tA 149 3.05e+00 1f2tA c.37.1.12 32373 1vq0A 302 3.28e+00 1ukfA 188 4.34e+00 d.3.1.10 99488 1ttuA 477 4.40e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1oshA 232 4.48e+00 a.123.1.1 93496 1j93A 353 5.59e+00 c.1.22.1 66454 1yvoA 172 5.85e+00 1o0xA 262 7.43e+00 d.127.1.1 80755 1bh9A 45 7.98e+00 1bh9A a.22.1.3 16483 3pmgA 561 8.87e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1onwA 390 9.71e+00 b.92.1.7,c.1.9.13 87172,87173 1unqA 125 1.03e+01 b.55.1.1 107968 1fl1A 230 1.09e+01 1at3A b.57.1.1 27023 1sglA 209 1.10e+01 d.124.1.1 105536 1ako 268 1.11e+01 1ako d.151.1.1 41779 1fit 147 1.14e+01 1fit d.13.1.1 37499 1ysqA 193 1.27e+01 1k2eA 156 1.31e+01 d.113.1.1 72010 1ta0A 197 1.33e+01 c.108.1.16 106729 1li4A 432 1.36e+01 c.2.1.4,c.23.12.3 84616,84617 1qmeA 702 1.58e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1wucA 250 1.59e+01 1erjA 393 1.60e+01 1erjA b.69.4.1 27660 1k3xA 262 1.61e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1cqqA 180 1.67e+01 1cqqA b.47.1.4 26422 1h6tA 291 1.70e+01 b.1.18.15,c.10.2.1 65686,65687 1fcyA 236 1.77e+01 2lbd a.123.1.1 19282 1kopA 223 1.78e+01 2cba b.74.1.1 27966 1xesA 413 1.79e+01 1vjpA 394 1.82e+01 c.2.1.3,d.81.1.3 100828,100829 1e8gA 560 1.85e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1xrtA 467 1.87e+01 1dqiA 124 1.95e+01 1do6A b.1.13.1 22357 1ud9A 245 1.97e+01 d.131.1.2,d.131.1.2 107768,107769 1noyA 388 2.01e+01 1clqA c.55.3.5 33713 1p7tA 731 2.04e+01 c.1.13.1 94319 1z5yE 149 2.18e+01 1wywA 230 2.20e+01 2gx9A 129 2.35e+01 1z54A 132 2.46e+01 1dwnA 127 2.55e+01 1dwnA d.85.1.1 40141 1jy5A 212 2.65e+01 d.124.1.1 71940 1wpoA 256 2.72e+01 1lay b.57.1.1 27012 1mkmA 249 2.80e+01 a.4.5.33,d.110.2.2 79242,79243 1hyeA 313 2.84e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 2giyA 191 2.90e+01 1dowA 205 3.02e+01 1dovA a.24.9.1 16626 1qysA 106 3.11e+01 k.41.1.1 96603 1qxyA 252 3.17e+01 d.127.1.1 96565 2bskB 90 3.24e+01 1dzkA 157 3.25e+01 1obpA b.60.1.1 27096 2bjfA 329 3.44e+01 2gf6A 135 3.46e+01 1vs0A 310 3.50e+01 1dytA 133 3.56e+01 7rsa d.5.1.1 37288 1w07A 659 3.59e+01 1sviA 195 3.63e+01 c.37.1.8 106048 1bdmA 327 3.66e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1gtmA 419 3.69e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1xauA 122 3.75e+01 1musA 477 4.01e+01 c.55.3.4 79494 1sefA 274 4.06e+01 b.82.1.11 105452 2h4uA 145 4.14e+01 2f51A 118 4.16e+01 1dqpA 230 4.30e+01 1dqnA c.61.1.1 34069 1oj4A 283 4.31e+01 d.14.1.5,d.58.26.5 93083,93084 1zndA 174 4.35e+01 1qwrA 319 4.42e+01 b.82.1.3 96491 1uujA 88 4.49e+01 a.221.1.1 108046 2b8eA 273 4.50e+01 1o6vA 466 4.50e+01 b.1.18.15,c.10.2.1 81099,81100 1gd0A 122 4.60e+01 1dptA d.80.1.3 39834 1q77A 138 4.60e+01 c.26.2.4 96023 1ro0A 216 4.80e+01 d.264.1.2 97664 1q8iA 783 4.81e+01 c.55.3.5,e.8.1.1 96208,96209 2cwzA 141 4.86e+01 1t01B 24 4.88e+01 1b56 135 4.96e+01 1hmt b.60.1.2 27183 1qy1A 174 5.07e+01 b.60.1.1 96568 1g0sA 209 5.12e+01 1g0sA d.113.1.1 60187 1qs1A 462 5.16e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 2bwvA 440 5.27e+01 1w6uA 302 5.31e+01 1lf7A 182 5.34e+01 b.60.1.1 73878 1m4jA 142 5.44e+01 d.109.1.2 78602 1yqtA 538 5.57e+01 1oo2A 119 5.61e+01 b.3.4.1 93372 1ivyA 452 5.65e+01 1ivyA c.69.1.5 34654 1zcbA 362 5.73e+01 1xkyA 301 5.73e+01 1ia9A 280 5.75e+01 1ia9A d.144.1.5 62113 1ypvA 313 5.90e+01 1zpyA 95 5.90e+01 1sr9A 644 6.02e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1vhoA 346 6.04e+01 b.49.3.1,c.56.5.4 100694,100695 2a15A 139 6.07e+01 1ollA 188 6.08e+01 b.1.1.4,b.1.1.4 93313,93314 1jfmA 174 6.10e+01 d.19.1.1 66640 1jeoA 180 6.12e+01 c.80.1.3 66611 1mkaA 171 6.17e+01 1mkaA d.38.1.2 38543 1x13A 401 6.22e+01 1x8qA 184 6.23e+01 1ys1X 320 6.32e+01 1ryp2 233 6.41e+01 1ryp2 1iicA 422 6.44e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1ftrA 296 6.48e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1i39A 225 6.50e+01 1ekeA c.55.3.1 61585 1vprA 374 6.52e+01 1ry6A 360 6.62e+01 c.37.1.9 98090 1ji6A 589 6.78e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2g38B 198 6.78e+01 1vqoE 178 6.78e+01 2bv5A 282 6.80e+01 1jjtA 228 6.82e+01 1a7tA d.157.1.1 63139 2be3A 226 6.89e+01 1y791 680 6.92e+01 2bfdA 400 7.04e+01 1j1qA 261 7.07e+01 d.165.1.1 90768 1qeyA 31 7.11e+01 1qeyA h.2.1.1 45666 1whsB 153 7.14e+01 1whtB 1ohzB 60 7.15e+01 a.139.1.1 93044 1x7yA 400 7.21e+01 1i12A 160 7.22e+01 1i21A d.108.1.1 61515 1s69A 124 7.38e+01 a.1.1.1 105305 2b5gA 171 7.47e+01 1vqoY 241 7.50e+01 2bh8A 101 7.51e+01 1odkA 235 7.53e+01 c.56.2.1 86863 1h7sA 365 7.55e+01 d.14.1.3,d.122.1.2 65705,65706 1mml 265 7.63e+01 1mml e.8.1.2 43015 1wo8A 126 7.78e+01 1xgsA 295 7.84e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 2czrA 226 7.86e+01 1sczA 233 7.93e+01 c.43.1.1 98802 1lshA 1056 7.95e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1pc3A 350 8.06e+01 c.94.1.1 104102 1p8xA 344 8.12e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1ro2A 216 8.18e+01 d.264.1.2 97665 2d9rA 104 8.29e+01 1x6vA 630 8.35e+01 1lj8A 493 8.43e+01 a.100.1.9,c.2.1.6 90392,90393 1fm4A 159 8.53e+01 1bv1 d.129.3.1 76186 1uekA 275 8.54e+01 d.14.1.5,d.58.26.5 88483,88484 2bmoB 194 8.61e+01 1dlfL 113 8.86e+01 8fabA b.1.1.1 20382 2fh1A 344 8.95e+01 1qahA 136 8.99e+01 d.79.1.1 96338 1t3qC 288 9.00e+01 d.87.2.1,d.145.1.3 106371,106372