# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mugA 168 2.74e-01 1mugA c.18.1.2 31030 1qynA 153 3.37e-01 d.33.1.1 96597 1j93A 353 3.40e-01 c.1.22.1 66454 1k3xA 262 4.13e-01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1u6zA 513 4.56e-01 1xnzA 264 4.80e-01 1ijbA 202 5.36e-01 c.62.1.1 71229 2ggcA 263 9.31e-01 1wywA 230 1.32e+00 1yvoA 172 1.34e+00 1oshA 232 2.11e+00 a.123.1.1 93496 1vq0A 302 2.12e+00 1mkmA 249 2.14e+00 a.4.5.33,d.110.2.2 79242,79243 1fit 147 2.35e+00 1fit d.13.1.1 37499 1w6uA 302 3.61e+00 1ttuA 477 3.99e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1zpyA 95 4.14e+00 2ltnA 181 4.16e+00 1led b.29.1.1 24024 1f2tA 149 4.84e+00 1f2tA c.37.1.12 32373 1o0xA 262 5.68e+00 d.127.1.1 80755 1vjpA 394 5.77e+00 c.2.1.3,d.81.1.3 100828,100829 1bh9A 45 6.61e+00 1bh9A a.22.1.3 16483 1dqiA 124 7.04e+00 1do6A b.1.13.1 22357 1gtmA 419 7.10e+00 1hwyA c.2.1.7,c.58.1.1 30223,33871 1mkyA 439 7.66e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1ym5A 300 7.99e+00 1z54A 132 8.11e+00 1qysA 106 8.40e+00 k.41.1.1 96603 1onwA 390 8.93e+00 b.92.1.7,c.1.9.13 87172,87173 1yqtA 538 9.24e+00 1fl1A 230 9.28e+00 1at3A b.57.1.1 27023 1vl4A 447 1.00e+01 d.283.1.1 108718 1oo2A 119 1.21e+01 b.3.4.1 93372 1xkyA 301 1.27e+01 1uujA 88 1.47e+01 a.221.1.1 108046 1h6tA 291 1.48e+01 b.1.18.15,c.10.2.1 65686,65687 1sauA 115 1.49e+01 1ukfA 188 1.49e+01 d.3.1.10 99488 1fcyA 236 1.50e+01 2lbd a.123.1.1 19282 1hyeA 313 1.51e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1x31D 99 1.52e+01 1bdmA 327 1.58e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1umgA 362 1.60e+01 d.280.1.1 107956 1ve2A 235 1.69e+01 3pmgA 561 1.70e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2h4uA 145 1.78e+01 1dytA 133 1.83e+01 7rsa d.5.1.1 37288 1pv5A 264 1.91e+01 d.251.1.1 95150 1wucA 250 1.95e+01 2a3qA 170 1.98e+01 1e8gA 560 2.02e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1vp4A 425 2.04e+01 1jp4A 308 2.07e+01 1jp4A e.7.1.1 63223 1j1qA 261 2.09e+01 d.165.1.1 90768 1wpoA 256 2.13e+01 1lay b.57.1.1 27012 1iicA 422 2.13e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1vlrA 350 2.14e+01 d.13.1.3,d.246.1.1 108860,108861 1f2tB 148 2.15e+01 1f2tB 1ta0A 197 2.15e+01 c.108.1.16 106729 1x13A 401 2.26e+01 1erjA 393 2.32e+01 1erjA b.69.4.1 27660 2bfdA 400 2.33e+01 1mjhA 162 2.33e+01 1mjhA c.26.2.4 31639 1bdb 277 2.34e+01 1bdb c.2.1.2 29874 2gx9A 129 2.37e+01 1oj4A 283 2.46e+01 d.14.1.5,d.58.26.5 93083,93084 1k2eA 156 2.52e+01 d.113.1.1 72010 2b8eA 273 2.62e+01 1no7A 604 2.69e+01 e.48.1.1 92016 1evlA 401 2.76e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1ysqA 193 2.77e+01 1ee8A 266 2.77e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1sviA 195 2.78e+01 c.37.1.8 106048 1avbA 226 2.80e+01 1led b.29.1.1 24158 1c1dA 355 2.83e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1x7yA 400 2.92e+01 1r2zA 274 2.98e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1o5kA 306 3.01e+01 c.1.10.1 92504 1t01B 24 3.02e+01 1p7tA 731 3.02e+01 c.1.13.1 94319 1kveA 63 3.09e+01 1kveA d.70.1.2 39590 1zndA 174 3.12e+01 1m98A 317 3.12e+01 a.175.1.1,d.17.4.6 78866,78867 1oe1A 336 3.14e+01 b.6.1.3,b.6.1.3 86891,86892 1qf5A 431 3.14e+01 1adeA c.37.1.10 32212 1unqA 125 3.15e+01 b.55.1.1 107968 1r3dA 264 3.15e+01 1fvkA 189 3.16e+01 1fvkA c.47.1.13 90351 1dowA 205 3.16e+01 1dovA a.24.9.1 16626 1h5qA 265 3.19e+01 1cydA c.2.1.2 60643 1qmeA 702 3.19e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2g38B 198 3.23e+01 1x6vA 630 3.25e+01 1yemA 179 3.27e+01 1jfmA 174 3.28e+01 d.19.1.1 66640 1z5yE 149 3.31e+01 1guqA 348 3.35e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 2be3A 226 3.38e+01 2gi3A 476 3.39e+01 1q8rA 120 3.40e+01 d.79.6.1 96225 1musA 477 3.46e+01 c.55.3.4 79494 2d9rA 104 3.64e+01 1qy1A 174 3.69e+01 b.60.1.1 96568 2gf6A 135 3.79e+01 2bmoB 194 3.90e+01 2gviA 204 3.92e+01 1whsB 153 3.97e+01 1whtB 2apjA 260 3.99e+01 2h58A 330 4.10e+01 1q6zA 528 4.28e+01 1ryp2 233 4.30e+01 1ryp2 1ewfA 456 4.39e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1y7bA 542 4.41e+01 1mvcA 240 4.42e+01 a.123.1.1 79499 1z84A 351 4.43e+01 1ypvA 313 4.44e+01 1hkhA 279 4.55e+01 c.69.1.12 90628 1xgsA 295 4.55e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1p1jA 533 4.65e+01 c.2.1.3,d.81.1.3 87687,87688 1f3lA 321 4.68e+01 1g6q2 c.66.1.6 59630 1u8vA 490 4.70e+01 1qs1A 462 4.74e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1xyiA 66 4.83e+01 1pjhA 280 4.84e+01 c.14.1.3 94761 1dzkA 157 4.87e+01 1obpA b.60.1.1 27096 1s69A 124 4.87e+01 a.1.1.1 105305 1i12A 160 4.92e+01 1i21A d.108.1.1 61515 2gz4A 207 4.93e+01 1s7kA 182 4.94e+01 1vl2A 421 4.99e+01 c.26.2.1,d.210.1.1 108708,108709 1snzA 344 5.04e+01 b.30.5.4 98930 1x8qA 184 5.04e+01 1dpjA 329 5.11e+01 1smrA b.50.1.2 26828 1uyjA 296 5.12e+01 f.8.1.2 108143 1b56 135 5.13e+01 1hmt b.60.1.2 27183 2f51A 118 5.18e+01 3prn 289 5.22e+01 3prn f.4.3.1 43761 2bskB 90 5.22e+01 1q77A 138 5.31e+01 c.26.2.4 96023 1xrtA 467 5.36e+01 1t82A 155 5.39e+01 d.38.1.5 106639 1vrmA 325 5.39e+01 1hy7A 173 5.50e+01 d.92.1.11 65957 2b5gA 171 5.51e+01 1xfkA 336 5.62e+01 1lshA 1056 5.63e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1kopA 223 5.70e+01 2cba b.74.1.1 27966 1vs0A 310 5.71e+01 1kpf 126 5.72e+01 1kpf d.13.1.1 37507 1t1jA 125 5.80e+01 c.137.1.1 106249 2gpiA 91 5.82e+01 1mkaA 171 5.85e+01 1mkaA d.38.1.2 38543 2b3hA 329 6.00e+01 1za7A 165 6.09e+01 1u1iA 392 6.09e+01 c.2.1.3,d.81.1.3 107582,107583 1sr9A 644 6.14e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1h65A 270 6.15e+01 c.37.1.8 65640 2bwvA 440 6.27e+01 1cqqA 180 6.31e+01 1cqqA b.47.1.4 26422 1ia9A 280 6.43e+01 1ia9A d.144.1.5 62113 1imjA 210 6.45e+01 c.69.1.23 71246 1q8iA 783 6.60e+01 c.55.3.5,e.8.1.1 96208,96209 1hrnA 337 6.61e+01 1smrA b.50.1.2 26869 1u6rA 380 6.62e+01 1xauA 122 6.64e+01 1olrA 224 6.70e+01 b.29.1.11 93330 1ts9A 102 6.73e+01 1i0rA 169 6.74e+01 1i0rA b.45.1.2 61489 2ethA 154 6.75e+01 1ud9A 245 6.85e+01 d.131.1.2,d.131.1.2 107768,107769 1qeyA 31 6.85e+01 1qeyA h.2.1.1 45666 1l7dA 384 6.93e+01 c.2.1.4,c.23.12.2 77774,77775 2ag4A 164 6.94e+01 1dykA 394 7.02e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1dqpA 230 7.07e+01 1dqnA c.61.1.1 34069 1mnnA 340 7.08e+01 b.2.5.7 79324 1w2xA 758 7.19e+01 c.14.1.4,c.14.1.4 109134,109135 1dwnA 127 7.28e+01 1dwnA d.85.1.1 40141 1yx0A 159 7.32e+01 1i40A 175 7.40e+01 b.40.5.1 66024 1ew6A 137 7.45e+01 1ewaA a.1.1.2 15637 1je8A 82 7.54e+01 a.4.6.2 77108 2bhvA 246 7.54e+01 1vhoA 346 7.56e+01 b.49.3.1,c.56.5.4 100694,100695 1m15A 357 7.57e+01 a.83.1.1,d.128.1.2 78368,78369 2a15A 139 7.58e+01 1tdzA 272 7.60e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1wudA 89 7.67e+01 2b1xB 172 7.68e+01 2bkfA 87 7.71e+01 1oe4A 247 7.76e+01 c.18.1.3 86895 1r6wA 322 7.80e+01 c.1.11.2,d.54.1.1 97165,97166 1uyrA 737 7.82e+01 c.14.1.4,c.14.1.4 100188,100189 1wxcA 281 7.82e+01 1y9zA 441 7.85e+01 1pgl1 185 8.07e+01 1f46A 140 8.08e+01 1f46A d.129.4.1 59643 1sefA 274 8.15e+01 b.82.1.11 105452 1molA 94 8.19e+01 1molA d.17.1.1 37988 1gpqA 135 8.33e+01 d.233.1.1 83295 1jyhA 157 8.37e+01 d.60.1.3 71956 4pgaA 337 8.40e+01 4pgaA c.88.1.1 35565 1i39A 225 8.42e+01 1ekeA c.55.3.1 61585 1i7nA 309 8.46e+01 c.30.1.5,d.142.1.3 83681,83682 2d8aA 348 8.48e+01 2bh8A 101 8.52e+01 1di2A 69 8.58e+01 1di2A d.50.1.1 38780 1mgtA 174 8.61e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1lurA 339 8.75e+01 b.30.5.4 84717 1r4pA 297 8.86e+01 d.165.1.2 97025 1jjtA 228 8.89e+01 1a7tA d.157.1.1 63139 1noyA 388 8.93e+01 1clqA c.55.3.5 33713 1vf6A 83 8.94e+01 a.194.1.1 100600 2ccyA 128 8.97e+01 2ccyA a.24.3.2 16544 1odkA 235 8.98e+01 c.56.2.1 86863