# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mugA 168 6.39e-01 1mugA c.18.1.2 31030 1qysA 106 1.73e+00 k.41.1.1 96603 1oshA 232 2.92e+00 a.123.1.1 93496 1sra 151 3.08e+00 1sra a.39.1.3 17190 1fcyA 236 3.28e+00 2lbd a.123.1.1 19282 1ijbA 202 4.81e+00 c.62.1.1 71229 1souA 194 6.31e+00 c.124.1.6 105858 1edg 380 6.64e+00 1edg c.1.8.3 28807 1jk7A 323 6.96e+00 1auiA d.159.1.3 63144 1ijgA 309 6.99e+00 1fouA e.27.1.1 62493 1u6zA 513 8.38e+00 2fhi 147 8.58e+00 1fit d.13.1.1 37505 1bh9A 45 9.17e+00 1bh9A a.22.1.3 16483 1g7dA 106 9.80e+00 1g7dA a.71.1.1 18318 1fnsA 196 1.02e+01 1auq c.62.1.1 34136 1qynA 153 1.18e+01 d.33.1.1 96597 1fit 147 1.19e+01 1fit d.13.1.1 37499 1k3xA 262 1.23e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1y9wA 140 1.26e+01 1wywA 230 1.41e+01 1aszB 490 1.43e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1ryp1 222 1.49e+01 1ryp1 1us8A 147 1.52e+01 c.37.1.12 99859 1q6zA 528 1.53e+01 1pz4A 116 1.64e+01 d.106.1.1 95400 1g0uL 241 1.74e+01 d.153.1.4 41894 1vrmA 325 1.78e+01 2dkb 433 1.84e+01 2dkb c.67.1.4 34438 1dqnA 230 1.87e+01 1dqnA c.61.1.1 34067 1bfd 528 2.00e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1ojqA 212 2.00e+01 d.166.1.1 93146 1wgeA 83 2.06e+01 1dqpA 230 2.18e+01 1dqnA c.61.1.1 34069 1z3xA 238 2.23e+01 1yvoA 172 2.23e+01 1rtxA 123 2.24e+01 a.1.1.1 97827 1l8dA 112 2.24e+01 h.4.12.1 73687 2gi3A 476 2.26e+01 1vqoE 178 2.26e+01 1c1dA 355 2.39e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1vhrA 184 2.43e+01 1vhrA c.45.1.1 32651 1w33A 181 2.49e+01 1r8mE 203 2.49e+01 a.118.3.1 97242 1u32A 293 2.51e+01 d.159.1.3 107631 1sjqA 105 2.52e+01 d.58.7.1 105660 1ul4A 94 2.58e+01 g.72.1.1 99538 1xvjA 109 2.59e+01 1s72E 178 2.60e+01 d.141.1.1,d.141.1.1 105323,105324 1nrlA 316 2.62e+01 a.123.1.1 92091 1phk 298 2.64e+01 1cdkA d.144.1.7 41635 2f6hX 419 2.68e+01 1uluA 261 2.69e+01 1yxmA 303 2.73e+01 2bl1A 172 2.83e+01 1fjmA 330 2.91e+01 1auiA d.159.1.3 42082 1h5wA 309 2.95e+01 e.27.1.1 65635 1pmi 440 2.96e+01 1pmi b.82.1.3 28114 1rwyA 109 3.03e+01 a.39.1.4 98002 1xvsA 126 3.09e+01 1otfA 62 3.10e+01 1otfA d.80.1.1 39820 1wpbA 172 3.19e+01 1h6qA 168 3.21e+01 1h6qA b.88.1.2 60692 1c4xA 285 3.23e+01 1c4xA c.69.1.10 34684 1f2tA 149 3.26e+01 1f2tA c.37.1.12 32373 1jj2E 177 3.32e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1nynA 131 3.38e+01 d.235.1.1 86410 1ohzB 60 3.40e+01 a.139.1.1 93044 1n1jA 93 3.43e+01 a.22.1.3 79813 1m6kA 251 3.45e+01 e.3.1.1 78695 1zthA 258 3.47e+01 1dugA 234 3.47e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1fmjA 351 3.48e+01 c.37.1.5 59879 1hq3B 126 3.55e+01 1aoiD a.22.1.1 16444 1gpqA 135 3.55e+01 d.233.1.1 83295 1gtmA 419 3.60e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1otjA 283 3.69e+01 b.82.2.5 93517 1wa5B 530 3.84e+01 1kx5D 125 3.87e+01 a.22.1.1 77596 1gyxA 76 3.88e+01 d.80.1.1 76387 1bgc 174 4.06e+01 1bgc a.26.1.1 16822 1c52 131 4.16e+01 1c52 a.3.1.1 15810 1oz9A 150 4.16e+01 d.92.1.15 93808 1ceo 343 4.21e+01 1ceo c.1.8.3 28808 1kjlA 146 4.28e+01 1d7uA 433 4.36e+01 2dkb c.67.1.4 34439 1pbv 195 4.54e+01 1pbv a.118.3.1 19179 1ucrA 78 4.61e+01 a.4.5.45 99188 2gp5A 349 4.61e+01 1koiA 184 4.69e+01 b.60.1.1 68725 1ukfA 188 4.70e+01 d.3.1.10 99488 1m4jA 142 4.74e+01 d.109.1.2 78602 2es9A 115 4.78e+01 1i1dA 161 4.85e+01 1i21A d.108.1.1 61526 1tzyB 126 4.87e+01 a.22.1.1 107531 1r8sE 203 4.87e+01 a.118.3.1 97248 1ryp2 233 4.95e+01 1ryp2 1wtaA 275 4.97e+01 1m3sA 186 5.01e+01 c.80.1.3 78573 1a8l 226 5.06e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1u35D 126 5.06e+01 1sy3A 184 5.07e+01 b.60.1.1 106110 1iw0A 215 5.12e+01 a.132.1.1 83720 1mjhA 162 5.17e+01 1mjhA c.26.2.4 31639 1ew4A 106 5.24e+01 1ew4A d.82.2.1 40023 1erxA 184 5.29e+01 1np1A b.60.1.1 27164 1cyj 90 5.44e+01 1ctj a.3.1.1 15805 1z0jB 59 5.44e+01 1s69A 124 5.46e+01 a.1.1.1 105305 1w07A 659 5.47e+01 1xqwA 293 5.63e+01 1a3k 137 5.69e+01 1a3k b.29.1.3 24218 1h7sA 365 5.69e+01 d.14.1.3,d.122.1.2 65705,65706 1mnnA 340 5.71e+01 b.2.5.7 79324 1jpaA 312 5.75e+01 d.144.1.7 67011 2gf6A 135 5.81e+01 1i12A 160 5.83e+01 1i21A d.108.1.1 61515 1vr5A 547 5.84e+01 1ysqA 193 5.87e+01 1tvgA 153 5.92e+01 1vq0A 302 5.97e+01 1j08A 226 6.05e+01 c.47.1.2,c.47.1.2 83855,83856 1uklC 61 6.07e+01 a.38.1.1 99495 1wt4A 73 6.13e+01 1y01A 102 6.14e+01 1o60A 292 6.18e+01 c.1.10.4 92532 1x8qA 184 6.21e+01 1mtzA 293 6.30e+01 c.69.1.7 79467 1z8uA 102 6.38e+01 2ggcA 263 6.42e+01 1gz6A 319 6.44e+01 c.2.1.2 76410 1nf3A 195 6.46e+01 c.37.1.8 85594 1zjcA 418 6.56e+01 1wzdA 215 6.69e+01 2bz1A 196 6.70e+01 2fm9A 215 6.72e+01 1dytA 133 6.75e+01 7rsa d.5.1.1 37288 1lqsR 214 6.80e+01 b.1.2.1,b.1.2.1 74194,74195 1w0bA 102 6.90e+01 a.7.11.1 108985 1ozjA 144 6.94e+01 d.164.1.1 93846 1b7yA 350 6.96e+01 1pysA d.104.1.1 40776 1ee8A 266 6.99e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1enh 54 7.04e+01 2hddA a.4.1.1 15973 1xnzA 264 7.07e+01 1mwpA 96 7.08e+01 1mwpA d.170.2.1 42453 1onjA 61 7.16e+01 g.7.1.1 93358 1yruB 74 7.23e+01 1hleA 345 7.30e+01 1ovaA e.1.1.1 42618 1quuA 250 7.30e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1w6uA 302 7.31e+01 1puc 105 7.31e+01 1puc d.97.1.1 40675 1xauA 122 7.32e+01 1ewfA 456 7.36e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2ga9D 469 7.36e+01 1s1hM 132 7.37e+01 i.1.1.1 105165 1tkeA 224 7.53e+01 1c24A 263 7.55e+01 1c24A d.127.1.1 41148 1mc0A 368 7.56e+01 d.110.2.1,d.110.2.1 78937,78938 1qeyA 31 7.65e+01 1qeyA h.2.1.1 45666 1o5iA 249 7.68e+01 c.2.1.2 92499 1msk 331 7.84e+01 1msk d.173.1.1 42495 1ttuA 477 7.86e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1xs0A 136 7.87e+01 1t1jA 125 7.89e+01 c.137.1.1 106249 2gpjA 252 7.90e+01 1sd4A 126 7.90e+01 a.4.5.39 105428 1wudA 89 8.01e+01 2es7A 142 8.02e+01 1ps1A 337 8.02e+01 1ps1A a.128.1.4 19450 1daqA 71 8.18e+01 1daqA a.139.1.1 59113 1x6mA 196 8.23e+01 1iu4A 331 8.33e+01 d.3.1.8 71430 1amp 291 8.34e+01 1amp c.56.5.4 33837 1c5cL 214 8.42e+01 32c2A b.1.1.1,b.1.1.2 20474,21438 1rb9 53 8.59e+01 1rb9 g.41.5.1 45214 1p7gA 222 8.71e+01 a.2.11.1,d.44.1.1 94223,94224 1p1jA 533 8.73e+01 c.2.1.3,d.81.1.3 87687,87688 2anpA 291 8.77e+01 2comA 124 8.80e+01 2cfaA 217 8.80e+01 2be4A 272 8.85e+01 1uurA 473 8.93e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018