# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mugA 168 5.22e-01 1mugA c.18.1.2 31030 1j93A 353 6.28e-01 c.1.22.1 66454 1k3xA 262 7.03e-01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1qynA 153 7.05e-01 d.33.1.1 96597 1u6zA 513 8.53e-01 1ijbA 202 9.45e-01 c.62.1.1 71229 1xnzA 264 9.46e-01 1c24A 263 1.20e+00 1c24A d.127.1.1 41148 2kfnA 605 1.28e+00 1xwl c.55.3.5,e.8.1.1 33682,42975 2ggcA 263 1.79e+00 2bl1A 172 1.93e+00 1wywA 230 2.05e+00 1yvoA 172 2.06e+00 1mc0A 368 2.45e+00 d.110.2.1,d.110.2.1 78937,78938 1fnsA 196 2.50e+00 1auq c.62.1.1 34136 1oshA 232 3.40e+00 a.123.1.1 93496 1vq0A 302 3.47e+00 1mkmA 249 3.53e+00 a.4.5.33,d.110.2.2 79242,79243 2fhi 147 3.65e+00 1fit d.13.1.1 37505 1fit 147 3.67e+00 1fit d.13.1.1 37499 1sjqA 105 4.03e+00 d.58.7.1 105660 1hwxA 501 4.03e+00 1hwyA c.2.1.7,c.58.1.1 30250,33898 1w6uA 302 5.60e+00 1vhmA 195 5.85e+00 d.110.2.1 100691 1zpyA 95 6.58e+00 2ltnA 181 7.16e+00 1led b.29.1.1 24024 1ttuA 477 7.35e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1vjpA 394 9.27e+00 c.2.1.3,d.81.1.3 100828,100829 1o0xA 262 9.80e+00 d.127.1.1 80755 1led 243 9.87e+00 1led b.29.1.1 24039 1f2tA 149 9.95e+00 1f2tA c.37.1.12 32373 1bh9A 45 1.02e+01 1bh9A a.22.1.3 16483 1njkA 156 1.05e+01 d.38.1.1 85818 1us8A 147 1.05e+01 c.37.1.12 99859 1f3iA 481 1.06e+01 1b7eA 1gtmA 419 1.10e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1mkyA 439 1.16e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1ji8A 111 1.18e+01 d.203.1.1 66733 1ym5A 300 1.20e+01 1qysA 106 1.28e+01 k.41.1.1 96603 1yqtA 538 1.38e+01 1w1kA 560 1.38e+01 d.58.32.1,d.145.1.1 109059,109060 1fvrA 327 1.41e+01 d.144.1.7 60047 1z54A 132 1.41e+01 1do6A 124 1.41e+01 1do6A b.1.13.1 22361 1vl4A 447 1.45e+01 d.283.1.1 108718 1jenB 67 1.47e+01 1jenB d.156.1.1 42029 1dqiA 124 1.55e+01 1do6A b.1.13.1 22357 1onwA 390 1.56e+01 b.92.1.7,c.1.9.13 87172,87173 1oo2A 119 1.64e+01 b.3.4.1 93372 1fl1A 230 1.66e+01 1at3A b.57.1.1 27023 1onxA 390 1.69e+01 b.92.1.7,c.1.9.13 87176,87177 1vrpA 381 1.71e+01 1lenA 181 1.72e+01 1led b.29.1.1 24032 1xkyA 301 1.86e+01 1azpA 66 2.00e+01 1azpA b.34.13.1 37467 1jjeA 222 2.06e+01 1a7tA d.157.1.1 63117 1ukfA 188 2.19e+01 d.3.1.10 99488 1x31D 99 2.19e+01 1m9sA 605 2.19e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1uujA 88 2.20e+01 a.221.1.1 108046 1sauA 115 2.22e+01 1h6tA 291 2.23e+01 b.1.18.15,c.10.2.1 65686,65687 1fcyA 236 2.23e+01 2lbd a.123.1.1 19282 1hyeA 313 2.45e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1ve2A 235 2.47e+01 1pv5A 264 2.54e+01 d.251.1.1 95150 3pmgA 561 2.59e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2b7yA 182 2.61e+01 1umgA 362 2.67e+01 d.280.1.1 107956 1bdmA 327 2.69e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1qciA 262 2.70e+01 1qi7A d.165.1.1 42201 1bmdA 327 2.70e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 1y7tA 327 2.71e+01 1cx4A 305 2.71e+01 b.82.3.2,b.82.3.2 59099,59100 1wucA 250 2.75e+01 1f2tB 148 2.81e+01 1f2tB 1e8gA 560 2.82e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1jp4A 308 2.84e+01 1jp4A e.7.1.1 63223 1erjA 393 2.90e+01 1erjA b.69.4.1 27660 1vlrA 350 2.91e+01 d.13.1.3,d.246.1.1 108860,108861 2a3qA 170 2.92e+01 1k2eA 156 2.92e+01 d.113.1.1 72010 1wpoA 256 3.01e+01 1lay b.57.1.1 27012 1vp4A 425 3.02e+01 1ta0A 197 3.04e+01 c.108.1.16 106729 1iicA 422 3.09e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1d8cA 723 3.13e+01 1d8cA c.1.13.1 29325 2b8eA 273 3.14e+01 1qqcA 773 3.22e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 2h4uA 145 3.27e+01 1dytA 133 3.29e+01 7rsa d.5.1.1 37288 1x13A 401 3.30e+01 1obr 326 3.31e+01 1aye c.56.5.2 33828 2bfdA 400 3.40e+01 1mjhA 162 3.42e+01 1mjhA c.26.2.4 31639 1bdb 277 3.47e+01 1bdb c.2.1.2 29874 1pu5A 164 3.58e+01 b.95.1.1 104310 1yemA 179 3.61e+01 1avbA 226 3.70e+01 1led b.29.1.1 24158 1w36C 1122 3.80e+01 1no7A 604 3.82e+01 e.48.1.1 92016 1j1qA 261 3.83e+01 d.165.1.1 90768 4icb 76 3.96e+01 4icb a.39.1.1 17145 2gx9A 129 3.97e+01 1sviA 195 3.99e+01 c.37.1.8 106048 1ysqA 193 4.02e+01 1gz6A 319 4.06e+01 c.2.1.2 76410 1c1dA 355 4.08e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1ee8A 266 4.09e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1oj4A 283 4.14e+01 d.14.1.5,d.58.26.5 93083,93084 1zwxA 301 4.17e+01 1hvyA 288 4.20e+01 1bkpA d.117.1.1 41049 1c4kA 730 4.22e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1x7yA 400 4.23e+01 1r2zA 274 4.28e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1dm0A 287 4.30e+01 1dm0A d.165.1.2 42227 1o5kA 306 4.31e+01 c.1.10.1 92504 1t01B 24 4.37e+01 1jv4A 162 4.42e+01 b.60.1.1 67343 1musA 477 4.46e+01 c.55.3.4 79494 1kveA 63 4.48e+01 1kveA d.70.1.2 39590 1h5qA 265 4.54e+01 1cydA c.2.1.2 60643 1q8rA 120 4.55e+01 d.79.6.1 96225 1l1zA 274 4.55e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2g38B 198 4.60e+01 1dowA 205 4.60e+01 1dovA a.24.9.1 16626 1p7tA 731 4.65e+01 c.1.13.1 94319 1r3dA 264 4.67e+01 1fvkA 189 4.70e+01 1fvkA c.47.1.13 90351 2d9rA 104 4.75e+01 1v6cA 441 4.81e+01 1evlA 401 4.82e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1z5yE 149 4.83e+01 1guqA 348 4.84e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 2gi3A 476 4.91e+01 1fo1A 271 4.93e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1u3aA 189 4.97e+01 1jfmA 174 5.07e+01 d.19.1.1 66640 1qf5A 431 5.08e+01 1adeA c.37.1.10 32212 1xoyA 161 5.30e+01 1qmeA 702 5.32e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1zndA 174 5.35e+01 1y9zA 441 5.36e+01 2gf6A 135 5.37e+01 1whtB 153 5.52e+01 1whtB 1whsB 153 5.53e+01 1whtB 1d4fA 431 5.56e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 2h58A 330 5.57e+01 2be3A 226 5.58e+01 2gviA 204 5.59e+01 1y6hA 177 5.69e+01 2apjA 260 5.75e+01 1x6vA 630 5.83e+01 1h10A 125 6.01e+01 b.55.1.1 83446 1unqA 125 6.01e+01 b.55.1.1 107968 1i1dA 161 6.11e+01 1i21A d.108.1.1 61526 1p1jA 533 6.15e+01 c.2.1.3,d.81.1.3 87687,87688 1q6zA 528 6.17e+01 1oe1A 336 6.17e+01 b.6.1.3,b.6.1.3 86891,86892 1u8vA 490 6.18e+01 1ryp2 233 6.18e+01 1ryp2 1bfd 528 6.21e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1mvcA 240 6.29e+01 a.123.1.1 79499 1qy1A 174 6.33e+01 b.60.1.1 96568 3prn 289 6.36e+01 3prn f.4.3.1 43761 1m98A 317 6.37e+01 a.175.1.1,d.17.4.6 78866,78867 2f51A 118 6.38e+01 1hkhA 279 6.41e+01 c.69.1.12 90628 1ewfA 456 6.42e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1hfs 160 6.43e+01 1hfc d.92.1.11 40370 1x8qA 184 6.45e+01 1z84A 351 6.56e+01 1ypvA 313 6.64e+01 1dzkA 157 6.68e+01 1obpA b.60.1.1 27096 1xgsA 295 6.79e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1vrmA 325 6.82e+01 1i1iP 681 6.92e+01 1i1iP d.92.1.5 40297 1vl2A 421 6.93e+01 c.26.2.1,d.210.1.1 108708,108709 1s69A 124 6.94e+01 a.1.1.1 105305 1i06A 180 6.99e+01 1mup b.60.1.1 27131 1pjhA 280 7.00e+01 c.14.1.3 94761 2gz4A 207 7.02e+01 2ag4A 164 7.03e+01 1phk 298 7.07e+01 1cdkA d.144.1.7 41635 2b3hA 329 7.07e+01 1g13A 162 7.08e+01 1g13A b.95.1.1 60194 1lshA 1056 7.23e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1s7kA 182 7.27e+01 1st0A 337 7.30e+01 d.13.1.3,d.246.1.1 98979,98980 1dpjA 329 7.32e+01 1smrA b.50.1.2 26828 1kpf 126 7.33e+01 1kpf d.13.1.1 37507 2bskB 90 7.37e+01 1q77A 138 7.50e+01 c.26.2.4 96023 1to3A 304 7.53e+01 c.1.10.1 107161 2bz8A 58 7.55e+01 1xrtA 467 7.56e+01 1i12A 160 7.57e+01 1i21A d.108.1.1 61515 1s1eA 224 7.57e+01 1t82A 155 7.70e+01 d.38.1.5 106639 1hy7A 173 7.83e+01 d.92.1.11 65957 1xyiA 66 7.83e+01 1za7A 165 7.83e+01 1hnuA 280 7.87e+01 1hnoA c.14.1.3 61096 1a3k 137 7.88e+01 1a3k b.29.1.3 24218 1v1rA 400 7.89e+01 c.36.1.11 108272 1mwpA 96 7.92e+01 1mwpA d.170.2.1 42453 1sctB 151 7.93e+01 3sdhA a.1.1.2 15003 1xfkA 336 7.93e+01 1uyjA 296 7.99e+01 f.8.1.2 108143 2a1dD 329 8.03e+01 1pk5A 248 8.03e+01 a.123.1.1 88139 1kpeA 126 8.09e+01 1kpf d.13.1.1 37508 1cqqA 180 8.11e+01 1cqqA b.47.1.4 26422 1rtxA 123 8.14e+01 a.1.1.1 97827 1f3lA 321 8.14e+01 1g6q2 c.66.1.6 59630 1i05A 180 8.15e+01 1mup b.60.1.1 27130 1m4zA 238 8.16e+01 b.34.12.1 78630 1snzA 344 8.16e+01 b.30.5.4 98930 1t1jA 125 8.30e+01 c.137.1.1 106249 2gpiA 91 8.32e+01 1qs1A 462 8.37e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1ud9A 245 8.50e+01 d.131.1.2,d.131.1.2 107768,107769 1h65A 270 8.58e+01 c.37.1.8 65640 1b56 135 8.65e+01 1hmt b.60.1.2 27183 1kopA 223 8.69e+01 2cba b.74.1.1 27966 1imjA 210 8.76e+01 c.69.1.23 71246 1yc61 154 8.92e+01 1hrnA 337 8.94e+01 1smrA b.50.1.2 26869 1nnjA 271 8.96e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1u1iA 392 8.97e+01 c.2.1.3,d.81.1.3 107582,107583 2bhvA 246 9.00e+01