# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qynA 153 1.64e+00 d.33.1.1 96597 1wt4A 73 2.54e+00 1ia9A 280 3.12e+00 1ia9A d.144.1.5 62113 1mm4A 170 3.59e+00 f.4.1.2 79294 1sra 151 5.12e+00 1sra a.39.1.3 17190 1om2A 95 6.48e+00 1om2A a.23.4.1 16520 1ttuA 477 6.82e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1y9wA 140 8.59e+00 1f2tA 149 9.25e+00 1f2tA c.37.1.12 32373 1jhgA 101 1.36e+01 1jhgA a.4.12.1 19009 1wpbA 172 1.50e+01 2giyA 191 1.77e+01 1tfr 305 1.82e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1puc 105 1.83e+01 1puc d.97.1.1 40675 1g0sA 209 2.02e+01 1g0sA d.113.1.1 60187 1us8A 147 2.10e+01 c.37.1.12 99859 1o60A 292 2.12e+01 c.1.10.4 92532 1ud0A 113 2.17e+01 a.8.4.1 99198 1fx3A 169 2.20e+01 1fx3B d.33.1.1 38524 1z0jB 59 2.37e+01 1dugA 234 2.48e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1gpqA 135 2.58e+01 d.233.1.1 83295 1pmi 440 2.67e+01 1pmi b.82.1.3 28114 1qysA 106 2.68e+01 k.41.1.1 96603 1otfA 62 2.86e+01 1otfA d.80.1.1 39820 1nnwA 252 2.90e+01 d.159.1.5 80674 1vhrA 184 3.03e+01 1vhrA c.45.1.1 32651 2bvpA 276 3.08e+01 1ryp1 222 3.18e+01 1ryp1 2gf6A 135 3.47e+01 1ux5A 411 3.51e+01 a.207.1.1 100144 1fmb 104 3.54e+01 1fmb b.50.1.1 26777 1mugA 168 3.55e+01 1mugA c.18.1.2 31030 2ltnA 181 3.78e+01 1led b.29.1.1 24024 1g0uL 241 3.83e+01 d.153.1.4 41894 1xs0A 136 3.92e+01 1twfC 318 3.97e+01 1vqoE 178 3.98e+01 1jj2E 177 4.09e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 2bt6A 108 4.13e+01 2c9wA 169 4.18e+01 1rb9 53 4.29e+01 1rb9 g.41.5.1 45214 1s72E 178 4.31e+01 d.141.1.1,d.141.1.1 105323,105324 1v7rA 186 4.38e+01 c.51.4.1 100482 1zp7A 206 4.49e+01 1dytA 133 4.61e+01 7rsa d.5.1.1 37288 1w8xP 117 4.64e+01 1wfdA 93 4.66e+01 1scfA 273 4.90e+01 1exzA a.26.1.2 16873 1rznA 205 4.92e+01 1d2zB 153 5.03e+01 1d2zB a.77.1.2 18439 1wgeA 83 5.18e+01 1ztrA 61 5.32e+01 2acvA 463 5.38e+01 1xjdA 345 5.66e+01 1h6qA 168 5.74e+01 1h6qA b.88.1.2 60692 1souA 194 5.75e+01 c.124.1.6 105858 1u5pA 216 5.96e+01 2dkb 433 5.97e+01 2dkb c.67.1.4 34438 1jpaA 312 6.07e+01 d.144.1.7 67011 2gtsA 86 6.07e+01 1kb9D 246 6.08e+01 a.3.1.3,f.23.11.1 77317,77318 1ezvD 245 6.08e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 1mc0A 368 6.08e+01 d.110.2.1,d.110.2.1 78937,78938 1cyj 90 6.13e+01 1ctj a.3.1.1 15805 1fjhA 257 6.15e+01 1fjhB c.2.1.2 29870 1i50C 318 6.38e+01 d.74.3.1,d.181.1.1 61756,61757 1e1hB 174 6.46e+01 1ayfA 105 6.62e+01 1ayfA d.15.4.1 37684 1p7gA 222 6.65e+01 a.2.11.1,d.44.1.1 94223,94224 1r4yA 136 6.66e+01 d.1.1.3 97056 1xfhA 422 6.71e+01 1yqyA 523 6.72e+01 1xvsA 126 6.73e+01 1jk7A 323 6.89e+01 1auiA d.159.1.3 63144 2gf4A 100 6.91e+01 1uzmA 247 6.98e+01 1ro0A 216 7.02e+01 d.264.1.2 97664 1z54A 132 7.31e+01 1bh9A 45 7.40e+01 1bh9A a.22.1.3 16483 1gw5S 142 7.45e+01 d.110.4.2 70633 1tzyD 103 7.47e+01 a.22.1.1 107533 1te0A 318 7.61e+01 1hq3D 103 7.70e+01 1aoiB a.22.1.1 16464 2cthA 107 7.71e+01 3cyr a.138.1.1 19652 1q6zA 528 7.79e+01 1ul4A 94 7.81e+01 g.72.1.1 99538 1xizA 159 7.91e+01 1k5nA 276 8.05e+01 b.1.1.2,d.19.1.1 77266,77267 1iufA 144 8.26e+01 a.4.1.7,a.4.1.7 71439,71440 1enh 54 8.26e+01 2hddA a.4.1.1 15973 2eryA 172 8.26e+01 1u84A 90 8.29e+01 1ohzB 60 8.49e+01 a.139.1.1 93044 2daxA 152 8.55e+01 1vp4A 425 8.56e+01 1pzlA 237 8.58e+01 a.123.1.1 104393 1g0oA 283 8.73e+01 1ybvA c.2.1.2 60181 2gh1A 301 8.78e+01 2f6uA 234 8.79e+01 1bfd 528 8.98e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802