# TARGET T0382 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0382.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.23876 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.186 0.184 0.298 0.128 0.055 0.045 0.047 0.011 0.039 0.006 0.001 2 S 0.175 0.243 0.350 0.072 0.067 0.036 0.020 0.005 0.021 0.009 0.001 3 K 0.437 0.108 0.169 0.147 0.026 0.040 0.031 0.014 0.020 0.007 0.002 4 L 0.292 0.263 0.248 0.123 0.029 0.016 0.009 0.002 0.015 0.002 0.001 5 D 0.149 0.106 0.325 0.082 0.032 0.154 0.077 0.007 0.061 0.005 0.001 6 L 0.609 0.061 0.100 0.142 0.015 0.028 0.024 0.006 0.011 0.002 0.001 7 H 0.601 0.065 0.060 0.231 0.014 0.011 0.010 0.002 0.005 0.002 0.001 8 Q 0.218 0.197 0.107 0.363 0.048 0.019 0.026 0.004 0.015 0.002 0.001 9 M 0.030 0.393 0.388 0.025 0.079 0.039 0.014 0.001 0.029 0.001 0.001 10 T 0.018 0.136 0.668 0.004 0.026 0.113 0.002 0.001 0.027 0.005 0.001 11 T 0.980 0.002 0.003 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.001 12 Q 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 D 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 F 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.986 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 V 0.880 0.004 0.004 0.109 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 T 0.792 0.041 0.037 0.086 0.011 0.008 0.010 0.006 0.008 0.001 0.001 23 V 0.613 0.157 0.139 0.042 0.022 0.017 0.003 0.001 0.005 0.001 0.001 24 E 0.534 0.088 0.235 0.050 0.030 0.040 0.004 0.004 0.012 0.003 0.001 25 Q 0.871 0.013 0.011 0.071 0.001 0.015 0.003 0.001 0.015 0.001 0.001 26 D 0.872 0.015 0.023 0.060 0.001 0.011 0.009 0.001 0.007 0.001 0.001 27 D 0.881 0.008 0.015 0.071 0.003 0.006 0.012 0.002 0.001 0.001 0.001 28 A 0.901 0.023 0.026 0.032 0.008 0.003 0.002 0.001 0.002 0.001 0.001 29 L 0.872 0.040 0.030 0.040 0.004 0.007 0.001 0.001 0.005 0.001 0.001 30 L 0.695 0.052 0.067 0.134 0.004 0.019 0.008 0.001 0.017 0.002 0.001 31 G 0.732 0.015 0.041 0.067 0.023 0.005 0.029 0.045 0.003 0.037 0.001 32 N 0.746 0.011 0.034 0.104 0.008 0.021 0.058 0.010 0.004 0.003 0.001 33 Q 0.804 0.020 0.027 0.095 0.005 0.026 0.012 0.002 0.008 0.001 0.001 34 I 0.901 0.024 0.021 0.038 0.003 0.008 0.003 0.001 0.002 0.001 0.001 35 S 0.952 0.009 0.008 0.023 0.002 0.002 0.002 0.001 0.001 0.001 0.001 36 R 0.910 0.018 0.007 0.055 0.004 0.002 0.002 0.001 0.002 0.001 0.001 37 F 0.909 0.011 0.010 0.058 0.002 0.002 0.004 0.001 0.002 0.001 0.001 38 N 0.876 0.010 0.020 0.047 0.002 0.015 0.019 0.003 0.007 0.001 0.001 39 R 0.942 0.009 0.012 0.024 0.001 0.004 0.005 0.001 0.001 0.001 0.001 40 L 0.933 0.006 0.017 0.038 0.001 0.004 0.001 0.001 0.001 0.001 0.001 41 F 0.947 0.005 0.014 0.025 0.002 0.001 0.003 0.001 0.001 0.001 0.001 42 G 0.941 0.001 0.005 0.012 0.002 0.001 0.012 0.021 0.001 0.004 0.001 43 V 0.966 0.004 0.004 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 M 0.965 0.004 0.006 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 A 0.989 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 E 0.985 0.002 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 I 0.986 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 D 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 E 0.985 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.860 0.002 0.006 0.128 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 K 0.960 0.004 0.015 0.011 0.001 0.002 0.005 0.001 0.001 0.001 0.001 53 A 0.735 0.011 0.033 0.207 0.004 0.006 0.001 0.002 0.001 0.001 0.001 54 R 0.255 0.086 0.278 0.214 0.019 0.019 0.025 0.002 0.098 0.003 0.001 55 D 0.383 0.010 0.353 0.172 0.005 0.016 0.039 0.008 0.004 0.005 0.006 56 G 0.091 0.002 0.022 0.027 0.015 0.001 0.023 0.390 0.001 0.428 0.001 57 D 0.503 0.018 0.213 0.154 0.009 0.069 0.014 0.004 0.010 0.003 0.002 58 Q 0.824 0.018 0.029 0.088 0.004 0.020 0.006 0.002 0.008 0.001 0.001 59 R 0.952 0.006 0.009 0.024 0.001 0.007 0.001 0.001 0.001 0.001 0.001 60 T 0.960 0.005 0.007 0.021 0.001 0.004 0.001 0.001 0.001 0.001 0.001 61 A 0.979 0.003 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.980 0.002 0.003 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.981 0.003 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 S 0.985 0.002 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 L 0.823 0.003 0.006 0.164 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 F 0.722 0.030 0.095 0.124 0.005 0.008 0.009 0.002 0.004 0.001 0.001 67 E 0.368 0.016 0.055 0.515 0.003 0.018 0.013 0.007 0.003 0.002 0.001 68 Y 0.018 0.138 0.331 0.003 0.014 0.018 0.016 0.001 0.459 0.002 0.001 69 P 0.797 0.001 0.151 0.015 0.001 0.005 0.001 0.001 0.001 0.001 0.030 70 N 0.193 0.012 0.023 0.600 0.006 0.045 0.054 0.035 0.030 0.001 0.001 71 M 0.257 0.185 0.414 0.073 0.013 0.034 0.009 0.003 0.010 0.001 0.001 72 Q 0.751 0.059 0.122 0.026 0.004 0.023 0.008 0.002 0.003 0.001 0.001 73 V 0.878 0.084 0.021 0.008 0.004 0.003 0.001 0.001 0.002 0.001 0.001 74 R 0.962 0.017 0.011 0.003 0.001 0.005 0.001 0.001 0.002 0.001 0.001 75 L 0.984 0.003 0.004 0.003 0.001 0.004 0.001 0.001 0.001 0.001 0.001 76 Q 0.988 0.002 0.001 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 77 A 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 A 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 K 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 T 0.986 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.980 0.001 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 A 0.955 0.004 0.003 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 V 0.795 0.033 0.030 0.127 0.002 0.004 0.001 0.001 0.006 0.001 0.001 85 A 0.314 0.090 0.339 0.024 0.009 0.050 0.016 0.002 0.148 0.005 0.001 86 P 0.723 0.003 0.235 0.009 0.001 0.026 0.001 0.001 0.001 0.001 0.003 87 V 0.981 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 K 0.978 0.001 0.002 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 A 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Q 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 I 0.974 0.001 0.001 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 V 0.944 0.005 0.011 0.032 0.001 0.002 0.002 0.001 0.002 0.001 0.001 98 S 0.741 0.007 0.025 0.205 0.003 0.005 0.008 0.002 0.002 0.001 0.001 99 S 0.435 0.042 0.119 0.348 0.023 0.007 0.010 0.008 0.006 0.002 0.001 100 K 0.445 0.052 0.088 0.227 0.034 0.020 0.074 0.038 0.014 0.008 0.001 101 W 0.248 0.175 0.239 0.185 0.050 0.046 0.023 0.008 0.017 0.009 0.001 102 F 0.062 0.277 0.255 0.008 0.036 0.034 0.019 0.001 0.306 0.003 0.001 103 P 0.203 0.004 0.689 0.006 0.001 0.026 0.001 0.001 0.001 0.001 0.068 104 Q 0.619 0.041 0.196 0.071 0.016 0.022 0.012 0.007 0.008 0.005 0.003 105 A 0.353 0.054 0.242 0.274 0.023 0.022 0.012 0.006 0.009 0.002 0.002 106 G 0.135 0.014 0.106 0.030 0.113 0.004 0.044 0.191 0.004 0.360 0.001 107 D 0.478 0.040 0.172 0.192 0.023 0.054 0.015 0.003 0.013 0.005 0.005 108 A 0.559 0.057 0.144 0.186 0.018 0.010 0.012 0.006 0.004 0.003 0.001 109 G 0.565 0.009 0.042 0.061 0.043 0.002 0.037 0.160 0.002 0.078 0.001 110 M 0.720 0.036 0.092 0.083 0.033 0.009 0.007 0.007 0.004 0.007 0.001 111 C 0.694 0.101 0.075 0.081 0.013 0.020 0.005 0.001 0.008 0.001 0.001 112 L 0.737 0.099 0.078 0.051 0.010 0.013 0.002 0.001 0.007 0.001 0.001 113 D 0.596 0.104 0.106 0.095 0.026 0.031 0.020 0.003 0.017 0.001 0.001 114 L 0.596 0.071 0.096 0.153 0.007 0.039 0.011 0.002 0.023 0.001 0.001 115 L 0.350 0.153 0.243 0.158 0.019 0.038 0.012 0.003 0.022 0.003 0.001 116 D 0.402 0.108 0.126 0.168 0.034 0.049 0.072 0.009 0.020 0.011 0.001 117 D 0.175 0.084 0.115 0.489 0.042 0.010 0.054 0.012 0.016 0.002 0.001 118 G 0.052 0.026 0.132 0.031 0.144 0.003 0.058 0.384 0.002 0.168 0.001 119 T 0.180 0.342 0.257 0.148 0.034 0.025 0.003 0.001 0.008 0.001 0.001 120 F 0.033 0.485 0.267 0.030 0.102 0.038 0.009 0.002 0.029 0.005 0.001 121 K 0.010 0.571 0.255 0.002 0.010 0.023 0.002 0.001 0.125 0.001 0.001 122 P 0.027 0.010 0.921 0.001 0.001 0.027 0.001 0.001 0.002 0.001 0.012 123 K 0.317 0.169 0.265 0.067 0.064 0.034 0.025 0.024 0.021 0.012 0.002