# List of top-scoring protein chains for T0382.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d1rA 116 3.01e-01 1d1rA d.64.1.1 39548 1ueyA 127 5.95e+00 b.1.2.1 99285 1ahc 246 6.69e+00 1mrj d.165.1.1 42184 1mom 246 7.53e+00 1mrj d.165.1.1 42188 2a5dB 193 8.10e+00 1s5dA 240 9.02e+00 d.166.1.1 98541 1s5eA 240 9.29e+00 d.166.1.1 98547 1xtcA 194 1.11e+01 1lt3A d.166.1.1 42259 1cnzA 363 1.39e+01 1cnzA c.77.1.1 35061 1bdfA 235 1.40e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1k66A 149 1.48e+01 c.23.1.1 90941 1h5zA 455 1.50e+01 a.104.1.1 90622 1x8vA 455 1.50e+01 1ucjA 96 1.53e+01 d.1.1.2 99177 2czyA 77 1.53e+01 1cbg 490 1.55e+01 1e70M c.1.8.4 28933 1u13A 455 1.58e+01 a.104.1.1 107578 2benA 170 1.65e+01 1r6aA 295 1.66e+01 c.66.1.25 104817 1l9kA 305 1.69e+01 c.66.1.25 84569 2cr7A 80 1.77e+01 1uckA 96 1.79e+01 d.1.1.2 99179 1i52A 236 1.83e+01 1i52A c.68.1.13 61767 1vgtA 238 1.83e+01 c.68.1.13 100604 1gmpA 96 1.99e+01 1rgeA d.1.1.2 36036 1uciA 96 2.01e+01 d.1.1.2 99175 1i70A 96 2.03e+01 d.1.1.2 61862 1lniA 96 2.03e+01 d.1.1.2 74046 1ynvX 96 2.05e+01 1uclA 96 2.05e+01 d.1.1.2 99181 2fe8A 315 2.06e+01 1t2iA 96 2.08e+01 1i8vA 96 2.10e+01 d.1.1.2 61985 1h3mA 235 2.14e+01 c.68.1.13 90600 1t2hA 96 2.14e+01 1boxA 96 2.14e+01 1rgeA d.1.1.2 36038 1jtdB 273 2.16e+01 b.69.5.2 67265 2bkyX 89 2.23e+01 2bemA 170 2.27e+01 1gvhA 396 2.28e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1ul5A 88 2.35e+01 g.72.1.1 99539 1cii 602 2.67e+01 1cii f.1.1.1,h.4.3.1 43381,45787 1wwzA 159 2.76e+01 1wljA 189 2.83e+01 1go3F 107 3.06e+01 a.60.8.2 65407 2gqfA 401 3.20e+01 2esnA 310 3.31e+01 1h9fA 57 3.38e+01 1h9fA a.140.1.1 60826 1x6vA 630 3.39e+01 1tmwA 149 3.40e+01 1favA 79 3.41e+01 1envA h.3.2.1 45728 2bklA 695 3.42e+01 1yn9A 169 3.77e+01 1y74B 50 3.80e+01 1zl8B 54 3.84e+01 1mrg 263 3.87e+01 1mrj d.165.1.1 42183 1yh2A 175 3.89e+01 1gl2C 65 3.94e+01 h.1.15.1 65280 1zvyA 136 3.99e+01 1nd9A 49 4.08e+01 a.6.1.6 85575 2g7gA 213 4.14e+01 2czwA 124 4.24e+01 1tqzA 133 4.26e+01 1lrv 244 4.34e+01 1lrv a.118.1.5 19146 1u1iA 392 4.34e+01 c.2.1.3,d.81.1.3 107582,107583 1pkfA 419 4.42e+01 a.104.1.1 94829 1mrh 263 4.43e+01 1mrj d.165.1.1 42186 1rgoA 70 4.43e+01 g.66.1.1,g.66.1.1 97444,97445 1wu7A 434 4.63e+01 1pxwA 128 4.68e+01 d.79.3.1 95305 1tis 286 5.10e+01 1bkpA d.117.1.1 41040 1vliA 385 5.11e+01 b.85.1.1,c.1.10.6 108830,108831 1wkbA 810 5.15e+01 1eblA 317 5.40e+01 1hn9A c.95.1.2,c.95.1.2 35973,35974 1sg0A 230 5.51e+01 1zx1A 231 5.54e+01 1wh5A 80 5.56e+01 2guuA 353 5.58e+01 2ffcA 353 5.61e+01 2bzsA 236 5.63e+01 1envA 123 5.71e+01 1envA h.3.2.1 45726 1vkuA 100 5.86e+01 a.28.1.1 108690 1ol5A 282 5.87e+01 d.144.1.7 93310 1ol6A 282 5.88e+01 d.144.1.7 93311 3cna 237 5.91e+01 1nls b.29.1.1 24017 1q5dA 419 5.93e+01 a.104.1.1 95891 1ncqC 236 6.02e+01 b.121.4.1 91804 1wz2A 967 6.07e+01 2c6dA 275 6.08e+01 2c6eA 283 6.09e+01 1ve4A 206 6.09e+01 2cna 237 6.13e+01 1nls b.29.1.1 24010 2cohA 202 6.14e+01 1mq4A 272 6.22e+01 d.144.1.7 91391 1muoA 297 6.57e+01 d.144.1.7 85110 1we8A 104 6.84e+01 1te4A 131 6.87e+01 a.118.1.16 106794 1bvsA 203 6.93e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16280,17955,25274 2bskA 89 6.97e+01 2bmcA 306 7.15e+01 1z3aA 168 7.20e+01 1t0bA 252 7.30e+01 c.23.16.6 106199 1w5tA 412 7.41e+01 1gzgA 337 7.45e+01 c.1.10.3 70805 2bh8A 101 7.50e+01 2ah6A 208 7.51e+01 1qpoA 284 7.53e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1ho8A 480 7.63e+01 1ho8A a.118.1.9 61107 1agsA 221 7.71e+01 1pgtA a.45.1.1,c.47.1.5 17691,32985 1z91A 147 7.83e+01 1mgrA 99 7.92e+01 d.1.1.2 79106 1a0dA 440 8.15e+01 1a0cA c.1.15.3 29533 1icfI 65 8.72e+01 1icfI g.28.1.1 44958