# TARGET T0382 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0382.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.286 0.179 0.229 0.111 0.061 0.028 0.044 0.017 0.033 0.012 0.001 2 S 0.295 0.173 0.303 0.079 0.072 0.026 0.015 0.008 0.013 0.014 0.001 3 K 0.309 0.141 0.192 0.160 0.032 0.055 0.060 0.012 0.029 0.006 0.002 4 L 0.187 0.376 0.262 0.077 0.043 0.025 0.007 0.002 0.020 0.002 0.001 5 D 0.071 0.136 0.392 0.032 0.031 0.198 0.031 0.002 0.102 0.005 0.001 6 L 0.767 0.020 0.044 0.114 0.004 0.021 0.015 0.004 0.009 0.001 0.001 7 H 0.695 0.023 0.035 0.209 0.006 0.013 0.011 0.002 0.004 0.001 0.001 8 Q 0.234 0.093 0.055 0.522 0.026 0.014 0.028 0.007 0.018 0.001 0.001 9 M 0.033 0.301 0.473 0.031 0.079 0.033 0.021 0.004 0.021 0.003 0.001 10 T 0.019 0.181 0.589 0.013 0.060 0.097 0.005 0.002 0.021 0.013 0.001 11 T 0.933 0.007 0.014 0.021 0.003 0.011 0.002 0.001 0.007 0.001 0.001 12 Q 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 D 0.984 0.001 0.001 0.011 0.001 0.001 0.002 0.001 0.001 0.001 0.001 14 L 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 F 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 V 0.941 0.001 0.001 0.056 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 T 0.932 0.010 0.013 0.027 0.002 0.004 0.005 0.004 0.002 0.001 0.001 23 V 0.889 0.031 0.019 0.050 0.004 0.004 0.001 0.001 0.001 0.001 0.001 24 E 0.846 0.036 0.064 0.019 0.012 0.013 0.001 0.002 0.004 0.003 0.001 25 Q 0.965 0.001 0.001 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 D 0.973 0.002 0.004 0.015 0.001 0.002 0.003 0.001 0.001 0.001 0.001 27 D 0.949 0.001 0.002 0.042 0.001 0.001 0.002 0.001 0.001 0.001 0.001 28 A 0.965 0.003 0.006 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 L 0.934 0.010 0.013 0.036 0.002 0.002 0.001 0.001 0.002 0.001 0.001 30 L 0.828 0.015 0.036 0.095 0.002 0.010 0.006 0.001 0.007 0.001 0.001 31 G 0.861 0.009 0.029 0.044 0.009 0.003 0.009 0.019 0.001 0.015 0.001 32 N 0.844 0.006 0.016 0.079 0.005 0.013 0.023 0.009 0.002 0.002 0.001 33 Q 0.876 0.008 0.009 0.082 0.001 0.013 0.005 0.001 0.004 0.001 0.001 34 I 0.905 0.021 0.020 0.039 0.002 0.006 0.003 0.001 0.002 0.001 0.001 35 S 0.948 0.007 0.007 0.028 0.003 0.002 0.003 0.001 0.001 0.001 0.001 36 R 0.925 0.015 0.006 0.044 0.003 0.002 0.002 0.001 0.001 0.001 0.001 37 F 0.915 0.013 0.010 0.051 0.002 0.003 0.002 0.001 0.002 0.001 0.001 38 N 0.902 0.009 0.016 0.038 0.002 0.014 0.011 0.002 0.006 0.001 0.001 39 R 0.936 0.007 0.008 0.034 0.001 0.005 0.005 0.001 0.002 0.001 0.001 40 L 0.933 0.005 0.011 0.044 0.001 0.004 0.001 0.001 0.001 0.001 0.001 41 F 0.950 0.007 0.011 0.022 0.002 0.001 0.004 0.001 0.001 0.001 0.001 42 G 0.966 0.001 0.003 0.008 0.001 0.001 0.007 0.010 0.001 0.003 0.001 43 V 0.968 0.004 0.003 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 M 0.975 0.003 0.004 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 A 0.988 0.002 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 E 0.981 0.002 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 I 0.978 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 A 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 D 0.988 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 E 0.955 0.001 0.001 0.042 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.882 0.010 0.022 0.078 0.001 0.003 0.001 0.001 0.001 0.001 0.001 52 K 0.898 0.013 0.038 0.038 0.002 0.006 0.004 0.001 0.001 0.001 0.001 53 A 0.600 0.024 0.052 0.286 0.010 0.010 0.005 0.007 0.006 0.001 0.001 54 R 0.133 0.159 0.487 0.068 0.018 0.028 0.014 0.002 0.089 0.003 0.001 55 D 0.171 0.019 0.525 0.139 0.004 0.065 0.047 0.005 0.016 0.005 0.003 56 G 0.083 0.007 0.051 0.024 0.044 0.003 0.044 0.313 0.002 0.430 0.001 57 D 0.504 0.025 0.131 0.243 0.013 0.031 0.031 0.009 0.008 0.005 0.001 58 Q 0.711 0.017 0.042 0.133 0.010 0.016 0.029 0.024 0.008 0.010 0.001 59 R 0.892 0.014 0.020 0.049 0.002 0.012 0.004 0.002 0.003 0.001 0.001 60 T 0.876 0.024 0.023 0.058 0.003 0.008 0.002 0.001 0.005 0.001 0.001 61 A 0.924 0.016 0.019 0.023 0.007 0.004 0.002 0.001 0.003 0.001 0.001 62 L 0.951 0.008 0.013 0.022 0.001 0.003 0.001 0.001 0.001 0.001 0.001 63 L 0.963 0.009 0.008 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.001 64 S 0.974 0.003 0.009 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 L 0.835 0.005 0.010 0.143 0.001 0.003 0.001 0.001 0.001 0.001 0.001 66 F 0.567 0.051 0.142 0.173 0.006 0.030 0.016 0.006 0.009 0.001 0.001 67 E 0.473 0.029 0.083 0.359 0.005 0.022 0.017 0.004 0.005 0.002 0.001 68 Y 0.028 0.201 0.261 0.005 0.049 0.015 0.015 0.001 0.423 0.002 0.001 69 P 0.729 0.001 0.203 0.034 0.001 0.010 0.001 0.001 0.001 0.001 0.023 70 N 0.183 0.017 0.043 0.497 0.011 0.120 0.046 0.034 0.047 0.003 0.001 71 M 0.465 0.114 0.233 0.133 0.007 0.025 0.012 0.004 0.007 0.001 0.001 72 Q 0.790 0.044 0.090 0.027 0.006 0.017 0.016 0.002 0.006 0.001 0.001 73 V 0.861 0.071 0.018 0.030 0.008 0.005 0.001 0.001 0.005 0.001 0.001 74 R 0.911 0.028 0.023 0.014 0.002 0.015 0.001 0.001 0.005 0.001 0.001 75 L 0.957 0.010 0.010 0.014 0.001 0.005 0.001 0.001 0.002 0.001 0.001 76 Q 0.967 0.004 0.006 0.015 0.001 0.004 0.002 0.001 0.001 0.001 0.001 77 A 0.956 0.003 0.003 0.034 0.001 0.002 0.001 0.001 0.001 0.001 0.001 78 A 0.969 0.007 0.009 0.008 0.001 0.002 0.002 0.001 0.001 0.001 0.001 79 K 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.964 0.003 0.002 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 T 0.947 0.007 0.006 0.034 0.001 0.002 0.001 0.001 0.001 0.001 0.001 82 L 0.881 0.017 0.022 0.068 0.002 0.003 0.003 0.001 0.001 0.001 0.001 83 A 0.836 0.029 0.027 0.079 0.006 0.010 0.006 0.003 0.003 0.002 0.001 84 V 0.545 0.136 0.085 0.181 0.009 0.017 0.003 0.001 0.025 0.001 0.001 85 A 0.090 0.159 0.494 0.008 0.027 0.053 0.015 0.002 0.144 0.008 0.001 86 P 0.368 0.004 0.568 0.009 0.001 0.041 0.001 0.001 0.001 0.001 0.008 87 V 0.967 0.001 0.007 0.020 0.001 0.001 0.001 0.003 0.001 0.001 0.001 88 K 0.976 0.002 0.007 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 A 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 E 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Q 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 I 0.984 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 V 0.943 0.003 0.005 0.044 0.001 0.001 0.001 0.001 0.002 0.001 0.001 98 S 0.790 0.006 0.027 0.156 0.003 0.005 0.007 0.003 0.002 0.002 0.001 99 S 0.404 0.046 0.111 0.353 0.022 0.017 0.022 0.014 0.007 0.004 0.001 100 K 0.436 0.051 0.089 0.280 0.027 0.024 0.059 0.016 0.010 0.006 0.001 101 W 0.293 0.116 0.153 0.220 0.060 0.052 0.049 0.017 0.026 0.014 0.001 102 F 0.059 0.227 0.247 0.008 0.031 0.046 0.030 0.001 0.348 0.003 0.001 103 P 0.262 0.004 0.594 0.020 0.001 0.025 0.001 0.001 0.001 0.001 0.092 104 Q 0.444 0.055 0.228 0.114 0.029 0.035 0.039 0.021 0.018 0.015 0.002 105 A 0.255 0.072 0.256 0.299 0.029 0.026 0.023 0.013 0.014 0.008 0.003 106 G 0.064 0.025 0.171 0.028 0.156 0.007 0.041 0.182 0.004 0.321 0.001 107 D 0.248 0.059 0.319 0.140 0.037 0.125 0.015 0.005 0.038 0.010 0.003 108 A 0.837 0.017 0.038 0.089 0.004 0.006 0.004 0.002 0.002 0.001 0.001 109 G 0.936 0.002 0.010 0.024 0.003 0.001 0.004 0.012 0.001 0.007 0.001 110 M 0.931 0.004 0.008 0.042 0.004 0.002 0.003 0.003 0.001 0.001 0.001 111 C 0.922 0.006 0.014 0.045 0.001 0.006 0.002 0.001 0.002 0.001 0.001 112 L 0.941 0.011 0.012 0.028 0.001 0.004 0.001 0.001 0.002 0.001 0.001 113 D 0.958 0.005 0.008 0.023 0.001 0.002 0.002 0.001 0.001 0.001 0.001 114 L 0.773 0.009 0.011 0.187 0.002 0.009 0.003 0.001 0.007 0.001 0.001 115 L 0.488 0.074 0.183 0.182 0.009 0.026 0.013 0.005 0.018 0.002 0.001 116 D 0.608 0.056 0.178 0.067 0.019 0.030 0.027 0.004 0.006 0.005 0.001 117 D 0.220 0.065 0.104 0.547 0.027 0.010 0.011 0.006 0.008 0.001 0.001 118 G 0.025 0.017 0.102 0.018 0.092 0.003 0.087 0.389 0.003 0.264 0.001 119 T 0.152 0.254 0.349 0.127 0.036 0.057 0.007 0.001 0.012 0.001 0.004 120 F 0.037 0.561 0.222 0.029 0.058 0.042 0.008 0.001 0.039 0.002 0.001 121 K 0.014 0.404 0.354 0.002 0.013 0.041 0.008 0.001 0.162 0.001 0.001 122 P 0.086 0.010 0.834 0.006 0.001 0.040 0.001 0.001 0.002 0.001 0.022 123 K 0.338 0.184 0.230 0.065 0.075 0.027 0.016 0.022 0.025 0.018 0.001