# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 5.47e-03 1yn9A 169 3.47e-01 1x8vA 455 8.84e-01 2cwyA 94 1.42e+00 1u2wA 122 1.54e+00 1uhgA 385 1.62e+00 e.1.1.1 88491 1cuk 203 1.93e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1lniA 96 2.25e+00 d.1.1.2 74046 1ka2A 499 2.26e+00 d.92.1.5 77305 2c3mA 1231 2.75e+00 2bb6A 414 3.22e+00 1vddA 228 3.38e+00 e.49.1.1 108519 1up7A 417 3.44e+00 1h3nA 878 3.66e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1w68A 390 3.76e+00 a.25.1.2 109216 2bcqA 335 3.82e+00 1vmaA 306 3.84e+00 a.24.13.1,c.37.1.10 108887,108888 2c12A 439 3.92e+00 1oyzA 280 4.23e+00 a.118.1.16 93775 1mun 225 4.27e+00 1mun a.96.1.2 18744 1gmjA 84 4.74e+00 h.4.8.1 65310 2b1eA 564 4.79e+00 1w5tA 412 4.99e+00 1pylA 97 5.09e+00 d.1.1.2 104391 1jhgA 101 5.24e+00 1jhgA a.4.12.1 19009 1kkhA 317 5.52e+00 d.14.1.5,d.58.26.3 72645,72646 1gl2C 65 5.57e+00 h.1.15.1 65280 1r1uA 106 5.81e+00 a.4.5.5 104771 1ks8A 433 5.93e+00 a.102.1.2 77519 1lrv 244 6.04e+00 1lrv a.118.1.5 19146 1tffA 234 6.16e+00 d.3.1.11 106854 1vrmA 325 6.22e+00 1s9pA 227 6.25e+00 a.123.1.1 105384 1zejA 293 6.30e+00 1fpzA 212 6.30e+00 1fpzA c.45.1.1 59976 2cohA 202 6.38e+00 1g8pA 350 6.67e+00 1g8pA c.37.1.20 60376 1i4mA 108 6.71e+00 d.6.1.1 66025 1ho8A 480 6.79e+00 1ho8A a.118.1.9 61107 1dowA 205 6.98e+00 1dovA a.24.9.1 16626 1mgrA 99 7.36e+00 d.1.1.2 79106 1y7yA 74 7.57e+00 1w27A 714 8.08e+00 1wu7A 434 8.53e+00 1lfkA 398 8.62e+00 a.104.1.1 77926 1hm6A 346 8.67e+00 1avc a.65.1.1 18147 1x3kA 152 8.75e+00 1tw9A 206 1.01e+01 a.45.1.1,c.47.1.5 107381,107382 1or0A 160 1.03e+01 d.153.1.2 93445 1gvhA 396 1.06e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2ccmA 191 1.10e+01 1mp1A 111 1.17e+01 a.188.1.1 91382 2c9wA 169 1.19e+01 1r31A 428 1.31e+01 d.58.20.1,d.179.1.1 96897,96898 2fupA 168 1.36e+01 1kl9A 182 1.36e+01 b.40.4.5 72681 1z3xA 238 1.37e+01 2ah6A 208 1.44e+01 1rm6C 161 1.44e+01 1uzeA 589 1.45e+01 d.92.1.5 108174 1wgzA 510 1.48e+01 1f7cA 231 1.62e+01 1f7cA a.116.1.1 19107 1tn6A 382 1.65e+01 2a1iA 146 1.67e+01 1xahA 354 1.68e+01 2ar0A 541 1.69e+01 1z67A 135 1.70e+01 1mswD 883 1.70e+01 e.8.1.3 79427 2f6hX 419 1.72e+01 1k3yA 221 1.78e+01 a.45.1.1,c.47.1.5 77245,77246 1q2zA 120 1.83e+01 a.118.19.1 95656 1cipA 353 1.84e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 2c1xA 456 1.86e+01 1go3F 107 1.86e+01 a.60.8.2 65407 1colA 204 1.86e+01 1a87 f.1.1.1 43378 1vqrA 297 1.88e+01 1wa8A 99 1.92e+01 1s8nA 205 1.92e+01 c.23.1.1 105374 1pmzA 86 1.95e+01 a.39.1.10 104195 1sqgA 429 1.95e+01 a.79.1.3,c.66.1.38 105912,105913 1kwfA 363 1.95e+01 a.102.1.2 73078 1k87A 669 2.00e+01 a.176.1.1,c.1.23.2 77286,77287 2bcfA 276 2.01e+01 2a9iA 113 2.04e+01 1hq1A 105 2.05e+01 1dulA a.36.1.1 17120 1a5t 334 2.06e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1keaA 221 2.07e+01 a.96.1.2 68491 1kb9A 431 2.09e+01 d.185.1.1,d.185.1.1 77311,77312 1tx4A 198 2.10e+01 1tx4A a.116.1.1 19098 1yb3A 175 2.12e+01 1kpsB 171 2.15e+01 a.118.12.1 68787 2h1nA 567 2.16e+01 1ujwB 135 2.18e+01 h.4.9.1 99472 1bouA 139 2.20e+01 1bouA a.88.1.1 18521 1i52A 236 2.21e+01 1i52A c.68.1.13 61767 1pi1A 185 2.24e+01 a.29.7.1 94699 1khdA 345 2.29e+01 a.46.2.1,c.27.1.1 77400,77401 1v4xB 146 2.32e+01 a.1.1.2 108364 1rzsA 61 2.41e+01 a.35.1.2 105139 1no1A 126 2.46e+01 a.179.1.1 85913 2c5kT 95 2.46e+01 1jkoC 52 2.48e+01 a.4.1.2 66809 2h58A 330 2.49e+01 1w99A 558 2.50e+01 1wzaA 488 2.52e+01 1ez0A 510 2.53e+01 1eyyA c.82.1.1 35385 1b3uA 588 2.56e+01 1b3uA a.118.1.2 19135 1l1eA 287 2.56e+01 c.66.1.18 73454 1l9lA 74 2.57e+01 a.64.1.1 77827 1nznA 126 2.57e+01 a.118.8.1 92382 2cfuA 658 2.58e+01 1a0p 290 2.59e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1gxyA 226 2.61e+01 d.166.1.3 76380 1elwA 118 2.67e+01 1a17 a.118.8.1 19207 1y8aA 332 2.70e+01 2fk8A 318 2.70e+01 1bqbA 301 2.72e+01 1hyt d.92.1.2 58962 1p7tA 731 2.75e+01 c.1.13.1 94319 1i1rB 181 2.76e+01 1i1rB a.26.1.1 61548 1bed 181 2.97e+01 1fvkA c.47.1.13 90330 1ew4A 106 2.97e+01 1ew4A d.82.2.1 40023 1ee4A 423 3.05e+01 1ee4A a.118.1.1 19128 1o9rA 162 3.07e+01 a.25.1.1 86706 1dvoA 152 3.09e+01 1dvoA a.136.1.1 19623 2fuqA 747 3.12e+01 2b8eA 273 3.12e+01 1vgmA 378 3.18e+01 1yi8A 351 3.19e+01 1odoA 408 3.22e+01 a.104.1.1 92783 1quuA 250 3.23e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1u00A 227 3.31e+01 1utg 70 3.39e+01 1utg a.101.1.1 18813 1ornA 226 3.40e+01 a.96.1.1 87342 1lj9A 144 3.41e+01 a.4.5.28 78035 1mw5A 187 3.44e+01 d.259.1.1 91477 1xqoA 256 3.57e+01 2bl8A 103 3.61e+01 1k6kA 143 3.64e+01 a.174.1.1 77274 1ujcA 161 3.71e+01 1xszA 356 3.71e+01 1skvA 69 3.76e+01 a.30.5.1 105690 2cujA 108 3.76e+01 1tadA 324 3.77e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 3pviA 157 3.85e+01 3pviA c.52.1.6 33300 1pfvA 551 3.87e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1xi1A 575 3.96e+01 1nz6A 101 3.96e+01 a.2.3.1 86441 1x6iA 91 3.98e+01 1wwzA 159 3.99e+01 1nd9A 49 4.00e+01 a.6.1.6 85575 1g4yB 101 4.00e+01 1g4yB f.15.1.1 60251 1s6lA 212 4.02e+01 1vkuA 100 4.02e+01 a.28.1.1 108690 1ztuA 341 4.03e+01 1af7 274 4.09e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1qh8A 478 4.17e+01 1qguA c.92.2.3 35633 1xcbA 211 4.27e+01 a.4.5.38,c.2.1.12 109552,109553 2bbhA 269 4.30e+01 2c5uA 375 4.33e+01 1gtkA 313 4.36e+01 c.94.1.1,d.50.2.1 76346,76347 1gs9A 165 4.39e+01 a.24.1.1 83313 1zhxA 438 4.45e+01 1uptB 60 4.46e+01 a.193.1.1 99768 1yarA 233 4.48e+01 1otsA 465 4.56e+01 f.20.1.1 87415 1pszA 303 4.62e+01 1toaA c.92.2.2 35600 1fpoA 171 4.65e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1wkqA 164 4.67e+01 c.97.1.2 109393 1sfkA 76 4.67e+01 a.190.1.1 105488 2b5aA 77 4.73e+01 1flcB 175 4.78e+01 1flcB h.3.1.1 45716 2gi3A 476 4.80e+01 1zymA 258 4.81e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1svsA 353 4.83e+01 c.37.1.8 106051 1ds1A 324 4.85e+01 1drtA b.82.2.2 28127 1t3qA 168 4.87e+01 a.56.1.1,d.15.4.2 106367,106368 1bc5A 269 4.93e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1n1bA 549 4.95e+01 a.102.4.1,a.128.1.3 79799,79800 2ap3A 199 4.99e+01 1s4kA 120 4.99e+01 a.35.1.6 105254 2cp8A 54 5.02e+01 1evyA 366 5.07e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1epuA 591 5.09e+01 1dn1A e.25.1.1 43358 1p2xA 159 5.10e+01 a.40.1.1 104062 1s9rA 410 5.12e+01 d.126.1.4 98758 1nd4A 264 5.14e+01 d.144.1.6 91815 1di1A 300 5.15e+01 1di1A a.128.1.4 19446 1sur 215 5.20e+01 1sur c.26.2.2 31620 1qmyA 167 5.22e+01 1qmyA d.3.1.2 37094 1l5wA 796 5.23e+01 c.87.1.4 73605 1vdlA 80 5.23e+01 a.5.2.1 108528 1tbfA 347 5.29e+01 a.211.1.2 106743 2cxnA 557 5.33e+01 1jk0B 345 5.35e+01 a.25.1.2 63143 2cbiA 594 5.35e+01 1u0fA 564 5.36e+01 1gpuA 680 5.38e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2gf4A 100 5.45e+01 1xkyA 301 5.45e+01 1s28A 132 5.48e+01 d.198.1.1 105223 1lm5A 214 5.50e+01 d.211.2.1 74029 1gakA 141 5.59e+01 1gakA a.19.1.1 16415 1wljA 189 5.61e+01 1nrlA 316 5.64e+01 a.123.1.1 92091 1unkA 87 5.64e+01 1cei a.28.2.1 16935 1orjA 130 5.65e+01 a.24.19.1 93456 1vkeA 133 5.69e+01 a.152.1.2 108650 1lshA 1056 5.78e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2gh0A 213 5.81e+01 1yodA 30 5.86e+01 1wwpA 119 5.86e+01 2f4mA 295 5.87e+01 2fbnA 198 5.87e+01 1guzA 310 5.87e+01 c.2.1.5,d.162.1.1 65586,65587 1jmxA 494 5.92e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1io2A 213 6.02e+01 1ekeA c.55.3.1 62612 1ux8A 132 6.03e+01 1owcA 427 6.12e+01 a.103.1.1 104039 2b4jC 98 6.14e+01 1g24A 211 6.16e+01 1g24A d.166.1.1 42270 1hbnA 549 6.20e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1gweA 503 6.23e+01 e.5.1.1 70667 1m0uA 249 6.27e+01 a.45.1.1,c.47.1.5 78359,78360 1knzA 164 6.57e+01 e.34.1.1 68709 2f94F 350 6.60e+01 1tk9A 188 6.61e+01 c.80.1.3 107082 1hl2A 297 6.66e+01 c.1.10.1 83581 1zwyA 185 6.72e+01 1cdzA 96 6.74e+01 1cdzA c.15.1.1 30925 2fd5A 180 6.74e+01 1jmsA 381 6.76e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1z0jB 59 6.76e+01 1xo5A 183 6.77e+01 1x0vA 354 6.82e+01 2b1xB 172 6.88e+01 1o17A 345 6.97e+01 a.46.2.1,c.27.1.1 80765,80766 1s3cA 141 6.99e+01 1u4bA 580 7.03e+01 c.55.3.5,e.8.1.1 107664,107665 1zarA 282 7.06e+01 1uj6A 227 7.07e+01 c.124.1.4,d.58.40.1 107898,107899 1sheA 103 7.14e+01 d.274.1.1 105551 1gnwA 211 7.16e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 2ahmA 88 7.18e+01 1q35A 320 7.19e+01 c.94.1.1 95661 2a65A 519 7.22e+01 1o4sA 389 7.23e+01 c.67.1.1 86620 1ixcA 294 7.31e+01 a.4.5.37,c.94.1.1 83764,83765 1po5A 476 7.32e+01 a.104.1.1 94963 1pvaA 110 7.40e+01 1a75A a.39.1.4 17207 1zx1A 231 7.44e+01 1g5aA 628 7.48e+01 b.71.1.1,c.1.8.1 65152,65153 1vh4A 435 7.49e+01 b.80.6.1 100640 1q52A 314 7.50e+01 c.14.1.3 95846 2fu4A 83 7.53e+01 1w2yA 229 7.53e+01 a.204.1.1 109140 1aisB 200 7.56e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1ks9A 291 7.59e+01 a.100.1.7,c.2.1.6 68857,68858 1cqxA 403 7.65e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1yljA 263 7.66e+01 1z91A 147 7.72e+01 2cjpA 328 7.73e+01 1y9bA 90 7.74e+01 1zs3A 182 7.76e+01 1wmwA 330 7.77e+01 1f45B 197 7.78e+01 1f45B a.26.1.1 59642 1nvvS 481 7.79e+01 a.117.1.1 86279 1dytA 133 7.80e+01 7rsa d.5.1.1 37288 2aexA 346 7.82e+01 1l8dA 112 7.88e+01 h.4.12.1 73687 2bwbA 46 7.90e+01 2cg4A 152 7.93e+01 1us7B 265 7.95e+01 a.205.1.1 99858 1zl8B 54 8.05e+01 1i6pA 220 8.08e+01 1ddzA c.53.2.1 61848 2gfsA 372 8.16e+01 1h16A 759 8.30e+01 c.7.1.1 76462 1bl0A 129 8.32e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1yz4A 160 8.37e+01 1wkbA 810 8.38e+01 1ustA 93 8.38e+01 a.4.5.13 99884 1sumB 235 8.38e+01 a.7.12.1 106025 1wa5B 530 8.39e+01 1h5wA 309 8.46e+01 e.27.1.1 65635 2cviA 83 8.56e+01 1b8zA 90 8.61e+01 1huuA a.55.1.1 17902 1orc 71 8.61e+01 1orc a.35.1.2 17054 2gkpA 167 8.63e+01 1hw5A 210 8.74e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1b0nB 57 8.80e+01 1b0nB a.34.1.1 17002 1rktA 205 8.94e+01 a.4.1.9,a.121.1.1 97623,97624 1khyA 148 8.97e+01 a.174.1.1 77410