# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gl2C 65 1.45e+00 h.1.15.1 65280 1x8vA 455 1.85e+00 1qqqA 264 2.11e+00 1bkpA d.117.1.1 40931 2g8oA 264 3.17e+00 2g8mA 264 3.46e+00 1ypvA 313 3.52e+00 2a9uA 144 3.71e+00 1k66A 149 4.44e+00 c.23.1.1 90941 1wwzA 159 5.84e+00 1g4yB 101 5.94e+00 1g4yB f.15.1.1 60251 1oyzA 280 6.02e+00 a.118.1.16 93775 1lniA 96 6.14e+00 d.1.1.2 74046 1gvhA 396 6.46e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2bkyX 89 6.78e+00 1yb3A 175 7.84e+00 1g2bA 62 9.85e+00 1tud b.34.2.1 24488 1tw9A 206 9.87e+00 a.45.1.1,c.47.1.5 107381,107382 2h1nA 567 1.05e+01 2aq5A 402 1.07e+01 1s6bB 119 1.10e+01 a.133.1.2 98593 1wraA 308 1.10e+01 1zx1A 231 1.13e+01 1mp9A 198 1.15e+01 d.129.1.1,d.129.1.1 91385,91386 1wurA 220 1.42e+01 2cp8A 54 1.50e+01 1pylA 97 1.52e+01 d.1.1.2 104391 2d5xB 146 1.55e+01 1f28A 297 1.64e+01 1bkpA d.117.1.1 59608 1sgmA 191 1.75e+01 a.4.1.9,a.121.1.1 105537,105538 1u2wA 122 1.76e+01 1uj6A 227 1.83e+01 c.124.1.4,d.58.40.1 107898,107899 1i4yA 114 1.86e+01 2mhr a.24.4.1 61738 1i52A 236 1.99e+01 1i52A c.68.1.13 61767 1qo0D 196 2.01e+01 1qo0D c.23.1.3 31125 1ustA 93 2.07e+01 a.4.5.13 99884 2cruA 118 2.13e+01 2f57A 317 2.17e+01 2f05A 105 2.32e+01 2cwyA 94 2.34e+01 1s9pA 227 2.41e+01 a.123.1.1 105384 1wrrA 301 2.45e+01 1mgrA 99 2.46e+01 d.1.1.2 79106 1behA 187 2.48e+01 1a44 b.17.1.1 23700 1jkoC 52 2.49e+01 a.4.1.2 66809 1uscA 178 2.53e+01 b.45.1.2 99860 2h21A 440 2.55e+01 1n91A 108 2.62e+01 d.206.1.1 80326 1s1qA 145 2.67e+01 d.20.1.2 98351 2bibA 547 2.75e+01 1yxlA 119 2.78e+01 1vl7A 157 2.84e+01 b.45.1.1 108732 1uq5A 263 2.84e+01 d.165.1.1 99778 2btvA 901 2.92e+01 2btvA e.28.1.1 43376 1iq8A 582 3.05e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2d69A 430 3.07e+01 1vj2A 126 3.08e+01 b.82.1.10 100796 2cwxA 430 3.13e+01 1dk8A 147 3.13e+01 1agrE a.91.1.1 18548 1zvyA 136 3.16e+01 1sg0A 230 3.20e+01 1p0yA 444 3.26e+01 a.166.1.1,b.85.7.3 87654,87655 1d0dA 60 3.30e+01 1kigI g.8.1.2 44566 2f22A 144 3.38e+01 1oj4A 283 3.41e+01 d.14.1.5,d.58.26.5 93083,93084 2ah6A 208 3.52e+01 1nigA 152 3.53e+01 a.25.2.1 85740 1s6lA 212 3.68e+01 2a1iA 146 3.77e+01 1w2yA 229 3.86e+01 a.204.1.1 109140 1pq1A 196 3.93e+01 f.1.4.1 94986 1u3eM 174 3.95e+01 d.4.1.3,d.285.1.1 107640,107641 1r1hA 696 3.96e+01 d.92.1.4 104756 1hulA 108 4.07e+01 1hulA a.26.1.2 16865 1lrv 244 4.10e+01 1lrv a.118.1.5 19146 1mrg 263 4.15e+01 1mrj d.165.1.1 42183 1gl2D 65 4.24e+01 h.1.15.1 65281 1kmiZ 214 4.24e+01 h.4.11.1 72752 1wspA 84 4.35e+01 1b5l 172 4.62e+01 1b5l a.26.1.3 16900 1zhxA 438 4.66e+01 1vddA 228 4.66e+01 e.49.1.1 108519 1u55A 188 4.82e+01 d.278.1.1 107677 1yn9A 169 4.83e+01 1vkuA 100 4.90e+01 a.28.1.1 108690 1k7kA 221 4.93e+01 c.51.4.1 72104 1s4kA 120 4.96e+01 a.35.1.6 105254 2cw8A 537 5.02e+01 2b4jC 98 5.14e+01 1a5t 334 5.20e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1j54A 186 5.35e+01 c.55.3.5 77077 1gxyA 226 5.62e+01 d.166.1.3 76380 1zy4A 303 5.71e+01 1r1uA 106 5.75e+01 a.4.5.5 104771 1oh0A 131 5.90e+01 d.17.4.3 87004 1b5eA 246 5.99e+01 1b5eA d.117.1.1 41056 1mrj 247 6.00e+01 1mrj d.165.1.1 42177 1s5dA 240 6.03e+01 d.166.1.1 98541 1euvB 86 6.07e+01 1a5r d.15.1.1 37598 2fji1 399 6.26e+01 1l1dA 152 6.33e+01 b.88.1.3 73452 2dbsA 90 6.33e+01 1yllA 200 6.47e+01 1wlyA 333 6.48e+01 1bkpA 278 6.68e+01 1bkpA d.117.1.1 41029 1pmmA 466 6.73e+01 c.67.1.6 94901 1kdxB 28 6.80e+01 1sumB 235 6.84e+01 a.7.12.1 106025 1ew4A 106 6.91e+01 1ew4A d.82.2.1 40023 2a6hC 1119 7.06e+01 1pzlA 237 7.10e+01 a.123.1.1 104393 2dgkA 452 7.16e+01 1kthA 58 7.19e+01 g.8.1.1 68863 1sr4A 206 7.26e+01 b.42.2.1 105948 1lvaA 258 7.29e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1dcfA 136 7.31e+01 1dcfA c.23.1.2 31124 1sx7A 164 7.50e+01 1up9A 107 7.68e+01 1ne9A 335 7.80e+01 d.108.1.4,d.108.1.4 91839,91840 1vkeA 133 7.91e+01 a.152.1.2 108650 1hw5A 210 8.03e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1s0yA 76 8.15e+01 d.80.1.1 98314 1np7A 489 8.17e+01 a.99.1.1,c.28.1.1 80677,80678 2apoB 60 8.20e+01 1vggA 161 8.24e+01 1r8hA 87 8.27e+01 d.58.8.1 97233 1uj0A 62 8.30e+01 b.34.2.1 99449 2bkkA 264 8.36e+01 1twfK 120 8.37e+01 1rz2A 254 8.47e+01 b.100.1.1 105130 2gp4A 628 8.49e+01 1jx4A 352 8.59e+01 d.240.1.1,e.8.1.7 90378,90379 1yt3A 375 8.65e+01 1aop 497 8.70e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2gpiA 91 8.75e+01 1i6pA 220 8.77e+01 1ddzA c.53.2.1 61848 1hztA 190 8.77e+01 1i9aA d.113.1.2 61459 1ixcA 294 8.80e+01 a.4.5.37,c.94.1.1 83764,83765 1l5pA 93 8.86e+01 d.15.4.1 73598 1bkb 136 8.87e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1g1jA 43 8.98e+01 1g1iA h.1.13.1 45634 1p35A 299 8.99e+01 1p35A b.28.1.1 23925