# TARGET T0382 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0382.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.017 0.755 0.003 0.011 0.021 0.001 0.001 0.002 0.109 0.034 0.018 0.025 2 S 0.001 0.017 0.807 0.003 0.010 0.017 0.001 0.001 0.003 0.070 0.034 0.015 0.024 3 K 0.002 0.020 0.557 0.003 0.057 0.037 0.001 0.001 0.004 0.170 0.107 0.011 0.033 4 L 0.002 0.019 0.390 0.005 0.069 0.053 0.001 0.001 0.006 0.240 0.166 0.024 0.024 5 D 0.001 0.023 0.593 0.003 0.058 0.040 0.001 0.001 0.009 0.130 0.085 0.022 0.036 6 L 0.003 0.013 0.236 0.007 0.305 0.111 0.001 0.001 0.007 0.070 0.202 0.006 0.039 7 H 0.005 0.008 0.147 0.007 0.235 0.114 0.002 0.001 0.011 0.163 0.261 0.032 0.015 8 Q 0.009 0.016 0.183 0.006 0.186 0.180 0.003 0.003 0.030 0.119 0.189 0.009 0.068 9 M 0.004 0.038 0.465 0.001 0.013 0.093 0.002 0.002 0.031 0.188 0.028 0.119 0.017 10 T 0.002 0.036 0.697 0.001 0.004 0.108 0.001 0.001 0.014 0.039 0.020 0.004 0.074 11 T 0.001 0.002 0.056 0.001 0.015 0.889 0.001 0.001 0.001 0.011 0.023 0.001 0.002 12 Q 0.001 0.001 0.003 0.001 0.006 0.981 0.001 0.001 0.001 0.002 0.008 0.001 0.001 13 D 0.001 0.001 0.002 0.001 0.004 0.988 0.001 0.001 0.001 0.001 0.004 0.001 0.001 14 L 0.001 0.001 0.002 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 18 F 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 20 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 21 V 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 22 T 0.001 0.001 0.006 0.001 0.001 0.976 0.001 0.001 0.001 0.002 0.015 0.001 0.001 23 V 0.001 0.001 0.011 0.001 0.005 0.935 0.001 0.001 0.001 0.005 0.040 0.001 0.001 24 E 0.001 0.001 0.015 0.001 0.005 0.892 0.001 0.001 0.001 0.010 0.074 0.001 0.001 25 Q 0.001 0.001 0.037 0.001 0.013 0.854 0.001 0.001 0.001 0.019 0.074 0.001 0.001 26 D 0.001 0.001 0.025 0.001 0.037 0.844 0.001 0.001 0.001 0.014 0.078 0.001 0.001 27 D 0.001 0.001 0.033 0.001 0.077 0.763 0.001 0.001 0.001 0.021 0.103 0.001 0.001 28 A 0.001 0.002 0.029 0.001 0.075 0.797 0.001 0.001 0.003 0.014 0.076 0.001 0.002 29 L 0.001 0.004 0.039 0.001 0.038 0.779 0.001 0.001 0.005 0.022 0.105 0.002 0.003 30 L 0.002 0.004 0.044 0.001 0.027 0.723 0.001 0.002 0.005 0.030 0.152 0.005 0.004 31 G 0.002 0.002 0.067 0.001 0.024 0.737 0.001 0.002 0.004 0.034 0.120 0.002 0.006 32 N 0.001 0.002 0.064 0.001 0.024 0.777 0.001 0.001 0.002 0.029 0.092 0.003 0.004 33 Q 0.001 0.004 0.071 0.001 0.026 0.810 0.001 0.001 0.002 0.027 0.047 0.003 0.008 34 I 0.001 0.003 0.050 0.001 0.014 0.874 0.001 0.001 0.003 0.015 0.030 0.003 0.004 35 S 0.001 0.001 0.033 0.001 0.013 0.898 0.001 0.001 0.001 0.017 0.032 0.001 0.003 36 R 0.001 0.001 0.018 0.001 0.012 0.925 0.001 0.001 0.001 0.009 0.030 0.002 0.002 37 F 0.001 0.001 0.016 0.001 0.011 0.937 0.001 0.001 0.002 0.007 0.021 0.001 0.003 38 N 0.001 0.001 0.022 0.001 0.005 0.944 0.001 0.001 0.001 0.012 0.011 0.001 0.002 39 R 0.001 0.001 0.006 0.001 0.005 0.965 0.001 0.001 0.001 0.004 0.016 0.001 0.001 40 L 0.001 0.001 0.005 0.001 0.004 0.965 0.001 0.001 0.001 0.002 0.019 0.001 0.001 41 F 0.001 0.001 0.007 0.001 0.002 0.974 0.001 0.001 0.001 0.003 0.012 0.001 0.001 42 G 0.001 0.001 0.004 0.001 0.003 0.979 0.001 0.001 0.001 0.004 0.008 0.001 0.001 43 V 0.001 0.001 0.005 0.001 0.004 0.979 0.001 0.001 0.001 0.002 0.008 0.001 0.001 44 M 0.001 0.001 0.004 0.001 0.002 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.001 45 A 0.001 0.001 0.002 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.004 0.001 0.001 46 E 0.001 0.001 0.003 0.001 0.003 0.985 0.001 0.001 0.001 0.001 0.007 0.001 0.001 47 I 0.001 0.001 0.002 0.001 0.002 0.986 0.001 0.001 0.001 0.001 0.009 0.001 0.001 48 A 0.001 0.001 0.004 0.001 0.004 0.983 0.001 0.001 0.001 0.003 0.006 0.001 0.001 49 D 0.001 0.001 0.003 0.001 0.006 0.978 0.001 0.001 0.001 0.002 0.011 0.001 0.001 50 E 0.001 0.001 0.003 0.001 0.008 0.971 0.001 0.001 0.001 0.002 0.016 0.001 0.001 51 L 0.001 0.001 0.015 0.001 0.010 0.955 0.001 0.001 0.001 0.006 0.012 0.001 0.001 52 K 0.001 0.003 0.010 0.001 0.021 0.825 0.001 0.001 0.001 0.009 0.131 0.001 0.001 53 A 0.001 0.002 0.028 0.001 0.017 0.643 0.001 0.001 0.001 0.021 0.288 0.001 0.001 54 R 0.001 0.007 0.277 0.001 0.013 0.197 0.001 0.001 0.001 0.303 0.202 0.001 0.001 55 D 0.001 0.004 0.489 0.001 0.007 0.070 0.001 0.001 0.001 0.183 0.244 0.001 0.001 56 G 0.001 0.007 0.235 0.001 0.013 0.128 0.001 0.001 0.001 0.421 0.196 0.001 0.001 57 D 0.001 0.016 0.274 0.001 0.025 0.355 0.001 0.001 0.002 0.210 0.116 0.001 0.002 58 Q 0.001 0.010 0.072 0.001 0.030 0.795 0.001 0.001 0.001 0.036 0.050 0.001 0.004 59 R 0.001 0.001 0.019 0.001 0.009 0.957 0.001 0.001 0.001 0.004 0.007 0.001 0.001 60 T 0.001 0.001 0.012 0.001 0.016 0.951 0.001 0.001 0.001 0.004 0.012 0.001 0.002 61 A 0.002 0.002 0.008 0.001 0.011 0.950 0.001 0.001 0.001 0.003 0.020 0.001 0.002 62 L 0.001 0.001 0.007 0.001 0.013 0.949 0.001 0.001 0.001 0.002 0.024 0.001 0.001 63 L 0.001 0.001 0.006 0.001 0.049 0.892 0.001 0.001 0.001 0.006 0.043 0.001 0.001 64 S 0.001 0.001 0.012 0.001 0.071 0.799 0.001 0.001 0.001 0.011 0.103 0.001 0.001 65 L 0.001 0.002 0.018 0.001 0.118 0.722 0.001 0.001 0.001 0.014 0.121 0.001 0.003 66 F 0.001 0.014 0.086 0.001 0.031 0.634 0.001 0.002 0.004 0.056 0.157 0.006 0.007 67 E 0.002 0.031 0.135 0.006 0.026 0.336 0.001 0.001 0.002 0.132 0.310 0.004 0.014 68 Y 0.001 0.006 0.542 0.001 0.001 0.024 0.001 0.001 0.001 0.411 0.011 0.003 0.001 69 P 0.001 0.001 0.083 0.001 0.024 0.089 0.001 0.001 0.001 0.095 0.706 0.001 0.001 70 N 0.001 0.003 0.064 0.001 0.021 0.173 0.001 0.001 0.001 0.089 0.646 0.001 0.002 71 M 0.001 0.004 0.085 0.001 0.008 0.816 0.001 0.001 0.001 0.049 0.032 0.002 0.001 72 Q 0.003 0.005 0.041 0.001 0.001 0.925 0.001 0.001 0.003 0.006 0.006 0.001 0.007 73 V 0.006 0.002 0.012 0.001 0.001 0.958 0.002 0.001 0.001 0.004 0.003 0.005 0.004 74 R 0.004 0.001 0.006 0.001 0.001 0.977 0.001 0.001 0.001 0.001 0.003 0.002 0.004 75 L 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.002 0.001 0.001 76 Q 0.001 0.001 0.005 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.005 0.001 0.001 77 A 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.004 0.001 0.001 78 A 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 K 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 80 L 0.001 0.001 0.002 0.001 0.002 0.983 0.001 0.001 0.001 0.002 0.010 0.001 0.001 81 T 0.001 0.001 0.007 0.001 0.003 0.962 0.001 0.001 0.001 0.004 0.022 0.001 0.001 82 L 0.001 0.001 0.006 0.001 0.006 0.906 0.001 0.001 0.001 0.004 0.072 0.001 0.001 83 A 0.002 0.001 0.014 0.001 0.008 0.783 0.001 0.001 0.002 0.013 0.171 0.003 0.002 84 V 0.006 0.008 0.109 0.001 0.011 0.688 0.002 0.001 0.010 0.056 0.091 0.002 0.017 85 A 0.001 0.015 0.608 0.001 0.002 0.100 0.001 0.001 0.019 0.200 0.023 0.027 0.003 86 P 0.001 0.005 0.683 0.001 0.006 0.141 0.001 0.001 0.010 0.066 0.065 0.001 0.024 87 V 0.001 0.003 0.065 0.001 0.028 0.731 0.001 0.001 0.001 0.044 0.124 0.003 0.001 88 K 0.001 0.006 0.069 0.001 0.044 0.782 0.001 0.001 0.002 0.029 0.065 0.001 0.003 89 A 0.001 0.001 0.019 0.001 0.017 0.931 0.001 0.001 0.001 0.007 0.023 0.001 0.001 90 R 0.001 0.001 0.005 0.001 0.003 0.987 0.001 0.001 0.001 0.002 0.003 0.001 0.001 91 E 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 92 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 93 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 E 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 95 A 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 96 I 0.001 0.001 0.002 0.001 0.004 0.981 0.001 0.001 0.001 0.001 0.013 0.001 0.001 97 V 0.001 0.001 0.006 0.001 0.007 0.953 0.001 0.001 0.001 0.003 0.030 0.001 0.001 98 S 0.001 0.002 0.018 0.001 0.036 0.751 0.001 0.001 0.001 0.013 0.179 0.001 0.001 99 S 0.001 0.001 0.042 0.001 0.052 0.485 0.001 0.001 0.001 0.044 0.374 0.001 0.001 100 K 0.001 0.009 0.173 0.001 0.053 0.242 0.001 0.001 0.004 0.159 0.353 0.002 0.002 101 W 0.001 0.039 0.423 0.002 0.025 0.105 0.001 0.001 0.010 0.208 0.173 0.002 0.012 102 F 0.001 0.036 0.509 0.003 0.007 0.022 0.001 0.001 0.010 0.368 0.034 0.009 0.003 103 P 0.001 0.016 0.513 0.003 0.036 0.040 0.001 0.001 0.005 0.145 0.234 0.001 0.006 104 Q 0.001 0.020 0.277 0.001 0.070 0.050 0.001 0.001 0.005 0.230 0.341 0.003 0.003 105 A 0.001 0.020 0.191 0.001 0.077 0.092 0.001 0.001 0.006 0.195 0.412 0.002 0.004 106 G 0.001 0.033 0.241 0.001 0.036 0.113 0.001 0.001 0.004 0.370 0.191 0.005 0.005 107 D 0.001 0.028 0.506 0.001 0.020 0.154 0.001 0.001 0.004 0.215 0.061 0.002 0.008 108 A 0.001 0.010 0.085 0.001 0.039 0.757 0.001 0.001 0.001 0.036 0.067 0.001 0.003 109 G 0.001 0.001 0.015 0.001 0.018 0.936 0.001 0.001 0.001 0.007 0.021 0.001 0.001 110 M 0.001 0.001 0.010 0.001 0.010 0.965 0.001 0.001 0.001 0.004 0.009 0.001 0.001 111 C 0.001 0.001 0.005 0.001 0.007 0.977 0.001 0.001 0.001 0.001 0.008 0.001 0.001 112 L 0.001 0.001 0.004 0.001 0.010 0.970 0.001 0.001 0.001 0.003 0.011 0.001 0.001 113 D 0.001 0.001 0.003 0.001 0.018 0.933 0.001 0.001 0.001 0.003 0.041 0.001 0.001 114 L 0.001 0.001 0.007 0.001 0.021 0.867 0.001 0.001 0.001 0.007 0.094 0.001 0.001 115 L 0.001 0.005 0.068 0.001 0.028 0.748 0.001 0.001 0.001 0.023 0.123 0.001 0.002 116 D 0.001 0.015 0.128 0.002 0.060 0.383 0.001 0.001 0.002 0.063 0.339 0.004 0.003 117 D 0.001 0.003 0.054 0.004 0.025 0.055 0.001 0.001 0.001 0.101 0.754 0.001 0.002 118 G 0.001 0.006 0.269 0.007 0.012 0.011 0.001 0.001 0.005 0.273 0.397 0.012 0.007 119 T 0.002 0.026 0.647 0.004 0.004 0.004 0.003 0.001 0.049 0.115 0.040 0.023 0.083 120 F 0.009 0.093 0.479 0.016 0.003 0.001 0.016 0.003 0.109 0.063 0.009 0.030 0.166 121 K 0.003 0.020 0.402 0.004 0.001 0.001 0.004 0.001 0.074 0.061 0.004 0.406 0.019 122 P 0.001 0.025 0.685 0.002 0.001 0.001 0.001 0.001 0.022 0.016 0.004 0.001 0.240 123 K 0.001 0.015 0.846 0.009 0.007 0.002 0.001 0.001 0.007 0.034 0.013 0.059 0.005