# TARGET T0382 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0382.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.249 0.137 0.249 0.139 0.049 0.040 0.071 0.016 0.041 0.008 0.001 2 S 0.284 0.200 0.305 0.092 0.049 0.024 0.017 0.006 0.013 0.009 0.001 3 K 0.283 0.160 0.219 0.150 0.035 0.059 0.044 0.013 0.028 0.007 0.002 4 L 0.186 0.360 0.272 0.096 0.035 0.020 0.008 0.002 0.019 0.001 0.001 5 D 0.087 0.140 0.371 0.046 0.032 0.172 0.054 0.004 0.089 0.005 0.001 6 L 0.667 0.036 0.080 0.136 0.010 0.028 0.024 0.006 0.009 0.002 0.001 7 H 0.630 0.043 0.047 0.237 0.011 0.010 0.013 0.003 0.005 0.001 0.001 8 Q 0.239 0.134 0.080 0.450 0.033 0.017 0.026 0.004 0.014 0.001 0.001 9 M 0.037 0.340 0.427 0.033 0.076 0.041 0.016 0.001 0.026 0.001 0.001 10 T 0.024 0.147 0.615 0.007 0.035 0.129 0.003 0.001 0.032 0.007 0.001 11 T 0.978 0.002 0.003 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 12 Q 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 D 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 F 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 V 0.944 0.001 0.001 0.055 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 T 0.928 0.006 0.008 0.045 0.001 0.002 0.003 0.002 0.002 0.001 0.001 23 V 0.891 0.026 0.035 0.032 0.006 0.006 0.002 0.001 0.001 0.001 0.001 24 E 0.783 0.032 0.092 0.043 0.020 0.018 0.002 0.003 0.007 0.002 0.001 25 Q 0.960 0.001 0.001 0.033 0.001 0.002 0.001 0.001 0.001 0.001 0.001 26 D 0.976 0.001 0.003 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 D 0.955 0.001 0.003 0.036 0.001 0.001 0.002 0.001 0.001 0.001 0.001 28 A 0.967 0.004 0.006 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 L 0.942 0.013 0.009 0.029 0.001 0.002 0.001 0.001 0.002 0.001 0.001 30 L 0.852 0.018 0.027 0.082 0.002 0.007 0.004 0.001 0.006 0.001 0.001 31 G 0.865 0.008 0.019 0.056 0.009 0.003 0.013 0.016 0.002 0.009 0.001 32 N 0.798 0.008 0.026 0.103 0.006 0.016 0.031 0.006 0.003 0.002 0.001 33 Q 0.827 0.015 0.021 0.086 0.004 0.024 0.013 0.002 0.007 0.001 0.001 34 I 0.898 0.023 0.021 0.042 0.003 0.008 0.003 0.001 0.002 0.001 0.001 35 S 0.936 0.010 0.010 0.032 0.003 0.002 0.004 0.001 0.001 0.001 0.001 36 R 0.907 0.018 0.007 0.057 0.004 0.002 0.003 0.001 0.002 0.001 0.001 37 F 0.912 0.011 0.011 0.054 0.002 0.003 0.004 0.001 0.002 0.001 0.001 38 N 0.869 0.009 0.019 0.054 0.002 0.016 0.020 0.003 0.007 0.001 0.001 39 R 0.948 0.007 0.009 0.023 0.001 0.004 0.005 0.001 0.001 0.001 0.001 40 L 0.950 0.005 0.013 0.027 0.001 0.003 0.001 0.001 0.001 0.001 0.001 41 F 0.969 0.003 0.007 0.015 0.001 0.001 0.002 0.001 0.001 0.001 0.001 42 G 0.971 0.001 0.002 0.008 0.001 0.001 0.005 0.009 0.001 0.002 0.001 43 V 0.977 0.002 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 M 0.976 0.002 0.003 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 A 0.992 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 E 0.987 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 I 0.985 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 A 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 D 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 E 0.980 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.889 0.003 0.009 0.093 0.001 0.002 0.001 0.001 0.001 0.001 0.001 52 K 0.957 0.005 0.018 0.014 0.001 0.002 0.003 0.001 0.001 0.001 0.001 53 A 0.679 0.009 0.032 0.264 0.003 0.006 0.002 0.003 0.002 0.001 0.001 54 R 0.243 0.092 0.353 0.120 0.014 0.023 0.024 0.002 0.127 0.002 0.001 55 D 0.346 0.011 0.420 0.161 0.003 0.021 0.016 0.005 0.004 0.003 0.010 56 G 0.101 0.005 0.042 0.026 0.033 0.002 0.019 0.233 0.001 0.540 0.001 57 D 0.523 0.017 0.135 0.225 0.012 0.051 0.017 0.005 0.009 0.004 0.002 58 Q 0.744 0.016 0.031 0.147 0.007 0.023 0.014 0.006 0.011 0.002 0.001 59 R 0.918 0.010 0.016 0.040 0.001 0.011 0.001 0.001 0.002 0.001 0.001 60 T 0.928 0.009 0.013 0.039 0.001 0.006 0.001 0.001 0.002 0.001 0.001 61 A 0.960 0.007 0.008 0.015 0.003 0.003 0.001 0.001 0.001 0.001 0.001 62 L 0.967 0.005 0.006 0.018 0.001 0.003 0.001 0.001 0.001 0.001 0.001 63 L 0.970 0.006 0.003 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 S 0.978 0.003 0.006 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 L 0.839 0.005 0.009 0.141 0.001 0.002 0.002 0.001 0.001 0.001 0.001 66 F 0.674 0.053 0.123 0.116 0.007 0.011 0.008 0.002 0.005 0.001 0.001 67 E 0.419 0.017 0.056 0.467 0.003 0.017 0.012 0.005 0.003 0.002 0.001 68 Y 0.021 0.185 0.299 0.003 0.021 0.014 0.014 0.001 0.440 0.003 0.001 69 P 0.772 0.001 0.179 0.014 0.001 0.005 0.001 0.001 0.001 0.001 0.029 70 N 0.217 0.014 0.034 0.536 0.008 0.056 0.056 0.046 0.030 0.002 0.001 71 M 0.409 0.137 0.295 0.093 0.009 0.034 0.010 0.003 0.010 0.001 0.001 72 Q 0.821 0.039 0.088 0.023 0.003 0.016 0.006 0.001 0.002 0.001 0.001 73 V 0.931 0.043 0.011 0.010 0.002 0.002 0.001 0.001 0.001 0.001 0.001 74 R 0.977 0.009 0.006 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.001 75 L 0.988 0.003 0.003 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 76 Q 0.990 0.002 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 A 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 A 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 K 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 T 0.975 0.001 0.002 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.963 0.003 0.006 0.023 0.001 0.001 0.002 0.001 0.001 0.001 0.001 83 A 0.938 0.008 0.007 0.040 0.002 0.002 0.002 0.001 0.001 0.001 0.001 84 V 0.755 0.046 0.040 0.140 0.003 0.005 0.001 0.001 0.009 0.001 0.001 85 A 0.285 0.109 0.358 0.018 0.013 0.041 0.018 0.002 0.151 0.006 0.001 86 P 0.624 0.003 0.332 0.009 0.001 0.025 0.001 0.001 0.001 0.001 0.005 87 V 0.966 0.001 0.005 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 K 0.976 0.002 0.005 0.010 0.002 0.001 0.001 0.001 0.001 0.002 0.001 89 A 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Q 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 I 0.977 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 V 0.941 0.004 0.010 0.038 0.001 0.002 0.002 0.001 0.002 0.001 0.001 98 S 0.794 0.007 0.025 0.155 0.003 0.005 0.007 0.002 0.001 0.001 0.001 99 S 0.461 0.041 0.097 0.347 0.024 0.008 0.010 0.006 0.005 0.002 0.001 100 K 0.425 0.062 0.086 0.264 0.038 0.019 0.057 0.028 0.016 0.005 0.001 101 W 0.256 0.144 0.209 0.201 0.060 0.045 0.036 0.016 0.017 0.015 0.001 102 F 0.066 0.249 0.256 0.008 0.039 0.039 0.020 0.001 0.319 0.004 0.001 103 P 0.302 0.004 0.567 0.014 0.001 0.028 0.001 0.001 0.001 0.001 0.082 104 Q 0.592 0.041 0.154 0.115 0.021 0.022 0.023 0.011 0.009 0.009 0.002 105 A 0.285 0.061 0.206 0.353 0.033 0.021 0.018 0.008 0.011 0.003 0.002 106 G 0.079 0.016 0.139 0.022 0.159 0.005 0.034 0.186 0.004 0.357 0.001 107 D 0.434 0.041 0.203 0.162 0.027 0.085 0.012 0.003 0.020 0.007 0.006 108 A 0.784 0.022 0.048 0.124 0.006 0.007 0.003 0.002 0.002 0.001 0.001 109 G 0.894 0.003 0.012 0.034 0.007 0.001 0.009 0.026 0.001 0.013 0.001 110 M 0.917 0.005 0.012 0.053 0.004 0.002 0.003 0.003 0.001 0.001 0.001 111 C 0.936 0.009 0.012 0.033 0.002 0.004 0.002 0.001 0.001 0.001 0.001 112 L 0.960 0.008 0.008 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 113 D 0.962 0.005 0.008 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 114 L 0.824 0.006 0.007 0.148 0.001 0.005 0.003 0.001 0.004 0.001 0.001 115 L 0.501 0.072 0.173 0.189 0.006 0.028 0.010 0.002 0.016 0.001 0.001 116 D 0.703 0.055 0.092 0.056 0.013 0.021 0.045 0.004 0.006 0.004 0.001 117 D 0.250 0.053 0.081 0.575 0.019 0.005 0.008 0.003 0.005 0.001 0.001 118 G 0.033 0.011 0.080 0.022 0.087 0.002 0.095 0.486 0.003 0.182 0.001 119 T 0.268 0.189 0.251 0.195 0.022 0.052 0.008 0.001 0.009 0.001 0.004 120 F 0.045 0.507 0.235 0.049 0.080 0.042 0.007 0.002 0.030 0.004 0.001 121 K 0.014 0.393 0.330 0.004 0.017 0.040 0.008 0.001 0.193 0.001 0.001 122 P 0.086 0.013 0.832 0.006 0.001 0.031 0.001 0.001 0.002 0.001 0.030 123 K 0.297 0.200 0.247 0.072 0.077 0.028 0.016 0.027 0.021 0.014 0.001