# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h5zA 455 3.84e-01 a.104.1.1 90622 1u13A 455 8.13e-01 a.104.1.1 107578 1x8vA 455 8.80e-01 1e9xA 455 1.41e+00 1ea1A a.104.1.1 18969 2a9uA 144 1.94e+00 2ah6A 208 2.81e+00 2h1nA 567 4.19e+00 1rgeA 96 4.28e+00 1rgeA d.1.1.2 36028 1zq4A 693 4.71e+00 1hvyA 288 5.23e+00 1bkpA d.117.1.1 41049 1k66A 149 5.40e+00 c.23.1.1 90941 1wraA 308 5.93e+00 2bkyX 89 6.22e+00 1qqqA 264 6.48e+00 1bkpA d.117.1.1 40931 1udvA 89 6.49e+00 d.68.6.1 99224 1evfA 264 6.62e+00 1bkpA d.117.1.1 40932 1lniA 96 6.66e+00 d.1.1.2 74046 1qo0D 196 8.30e+00 1qo0D c.23.1.3 31125 1lrv 244 8.95e+00 1lrv a.118.1.5 19146 2g8oA 264 9.65e+00 1wwzA 159 1.01e+01 2g8mA 264 1.02e+01 1mp9A 198 1.11e+01 d.129.1.1,d.129.1.1 91385,91386 1gvhA 396 1.21e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1s6bB 119 1.32e+01 a.133.1.2 98593 2bibA 547 1.32e+01 1ypvA 313 1.43e+01 1oyzA 280 1.45e+01 a.118.1.16 93775 2cwxA 430 1.49e+01 1yxlA 119 1.55e+01 2d69A 430 1.55e+01 1iwhB 146 1.65e+01 a.1.1.2 76883 1np7A 489 1.84e+01 a.99.1.1,c.28.1.1 80677,80678 2d5xB 146 1.89e+01 1i52A 236 1.94e+01 1i52A c.68.1.13 61767 1mrg 263 2.07e+01 1mrj d.165.1.1 42183 1ne9A 335 2.20e+01 d.108.1.4,d.108.1.4 91839,91840 2aq5A 402 2.20e+01 1uq5A 263 2.22e+01 d.165.1.1 99778 1zvyA 136 2.24e+01 1huuA 90 2.36e+01 1huuA a.55.1.1 17897 2f22A 144 2.50e+01 1ghhA 81 2.63e+01 1ghhA d.57.1.1 38940 1zx1A 231 2.67e+01 1tw9A 206 2.73e+01 a.45.1.1,c.47.1.5 107381,107382 1pylA 97 2.73e+01 d.1.1.2 104391 1yb3A 175 2.87e+01 1q2zA 120 2.94e+01 a.118.19.1 95656 1mgrA 99 3.05e+01 d.1.1.2 79106 1hkxA 147 3.16e+01 d.17.4.7 83567 1o9rA 162 3.26e+01 a.25.1.1 86706 1w68A 390 3.32e+01 a.25.1.2 109216 1ydiA 263 3.35e+01 1uj6A 227 3.36e+01 c.124.1.4,d.58.40.1 107898,107899 2cwyA 94 3.54e+01 2bzsA 236 3.55e+01 1xs1A 193 3.56e+01 1vl7A 157 3.61e+01 b.45.1.1 108732 1i2oA 316 3.65e+01 1onrA c.1.10.1 61574 1gl2C 65 3.68e+01 h.1.15.1 65280 1ymmB 198 3.78e+01 1b5eA 246 3.89e+01 1b5eA d.117.1.1 41056 1ustA 93 3.94e+01 a.4.5.13 99884 1th5A 74 3.95e+01 1onrA 316 3.99e+01 1onrA c.1.10.1 29169 1f28A 297 4.03e+01 1bkpA d.117.1.1 59608 1b5l 172 4.04e+01 1b5l a.26.1.3 16900 1h0oA 390 4.16e+01 a.25.1.2 70845 1h9sA 140 4.23e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1k7kA 221 4.27e+01 c.51.4.1 72104 1x3mA 415 4.51e+01 1pq1A 196 4.64e+01 f.1.4.1 94986 1zh5A 195 4.67e+01 2d1uA 104 4.72e+01 1sgmA 191 4.73e+01 a.4.1.9,a.121.1.1 105537,105538 1ocsA 162 4.76e+01 d.189.1.1 92776 1mrj 247 5.01e+01 1mrj d.165.1.1 42177 1cuk 203 5.02e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1ahl 49 5.06e+01 1ahl g.9.1.1 44601 1eo9B 241 5.08e+01 3pchM b.3.6.1 22826 1u5tB 169 5.10e+01 a.4.5.54,a.4.5.54 107686,107687 1yn9A 169 5.10e+01 2gp4A 628 5.14e+01 1th1C 179 5.32e+01 1pxwA 128 5.35e+01 d.79.3.1 95305 1rzhM 307 5.45e+01 f.26.1.1 98165 1u3eM 174 5.56e+01 d.4.1.3,d.285.1.1 107640,107641 1oj4A 283 5.66e+01 d.14.1.5,d.58.26.5 93083,93084 1y791 680 5.77e+01 1g2bA 62 5.81e+01 1tud b.34.2.1 24488 1zvdA 380 5.82e+01 1euvB 86 5.96e+01 1a5r d.15.1.1 37598 1opy 131 5.98e+01 1opy d.17.4.3 38113 2cw8A 537 6.07e+01 3cyr 107 6.14e+01 3cyr a.138.1.1 19648 2b4jC 98 6.14e+01 119l 164 6.32e+01 1l92 d.2.1.3 36622 1i1iP 681 6.36e+01 1i1iP d.92.1.5 40297 1xsm 390 6.43e+01 1xsm a.25.1.2 16804 1a5t 334 6.46e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1s6lA 212 6.51e+01 1sg0A 230 6.52e+01 1ni5A 433 6.63e+01 c.26.2.5,d.229.1.1 80533,80534 1swyA 164 6.65e+01 1dk8A 147 6.69e+01 1agrE a.91.1.1 18548 1r8hA 87 6.71e+01 d.58.8.1 97233 1vq0A 302 6.72e+01 1z9eA 127 6.82e+01 1sx7A 164 6.87e+01 1whxA 111 6.91e+01 1bkpA 278 6.91e+01 1bkpA d.117.1.1 41029 1ireA 204 7.03e+01 d.149.1.1 76769 1udmA 149 7.23e+01 d.109.1.2 107780 1wvgA 359 7.32e+01 1gxyA 226 7.33e+01 d.166.1.3 76380 1r1uA 106 7.37e+01 a.4.5.5 104771 1s1qA 145 7.49e+01 d.20.1.2 98351 1c7qA 445 7.50e+01 2pgi c.80.1.2 35307 1yf9A 171 7.53e+01 1p4wA 99 7.80e+01 a.4.6.2 87783 1l1dA 152 8.00e+01 b.88.1.3 73452 1xo5A 183 8.33e+01 1l9lA 74 8.40e+01 a.64.1.1 77827 1s9pA 227 8.52e+01 a.123.1.1 105384 1yvrA 538 8.53e+01 1ift 263 8.54e+01 1mrj d.165.1.1 42211 1ibrB 462 8.56e+01 1qgrA a.118.1.1 19120 1u3dA 509 8.57e+01 a.99.1.1,c.28.1.1 107638,107639 1ugpA 203 8.62e+01 d.149.1.1 107831 1twfK 120 8.75e+01 1i50K 120 8.90e+01 d.74.3.2 61765 2cp8A 54 8.98e+01