Best Alignments for T0381

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1mkmA/T0381-1mkmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mkmA/T0381-1mkmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7062e-396.22e-152 a.4.5.33
d.110.2.2
2g7uA/T0381-2g7uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g7uA/T0381-2g7uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4680e-371.97e-143
1yspA/T0381-1yspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yspA/T0381-1yspA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6411e-291.10e-99
1tf1A/T0381-1tf1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tf1A/T0381-1tf1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2866e-284.60e-103 d.110.2.2
1ysqA/T0381-1ysqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ysqA/T0381-1ysqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1868e-274.19e-91
1on2A/T0381-1on2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1on2A/T0381-1on2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4226e-056.60e-35 a.4.5.24
a.76.1.1
1ulyA/T0381-1ulyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ulyA/T0381-1ulyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4839e-051.38e-32
1r7jA/T0381-1r7jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r7jA/T0381-1r7jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4882e-047.82e-24 a.4.5.49
2fbhA/T0381-2fbhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fbhA/T0381-2fbhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5144e-045.91e-20
1q1hA/T0381-1q1hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q1hA/T0381-1q1hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7479e-046.70e-19 a.4.5.41

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001